| Description |
Sample recapitulation of cell lineages using accessibility as measured by DNase-seq. TSSs were found by applying TSScall (https://github.com/lavenderca/TSScall) to a Start-seq dataset from mouse ES cells (Williams et al. Mol Cell (2015); GSE43390). TSSs were used in an analysis considering hosted DNase-DGF data over multiple cell types.
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| Anchor |
center |
| Bin start |
-2500 |
| Number of bins |
50 |
| Bin size |
100 |
| Public |
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| Validated |
|
| Genome assembly |
mm9 |
| Date created |
Sept. 12, 2016, 5:18 p.m. |
| Date updated |
Dec. 16, 2016, 10:54 a.m. |
| Feature list |
mESC 2016-06-29 cluster rep TSSs
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| Sort vector |
<none>
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| User datasets |
<none>
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| ENCODE datasets |
- wgEncodeUwDgfWbrainC57bl6ME14halfSigRep1
- wgEncodeUwDgfA20BalbcannMImmortalSigRep1
- wgEncodeUwDgfNih3t3NihsMImmortalSigRep1
- wgEncodeUwDgfKidneyC57bl6MAdult8wksSigRep1
- wgEncodeUwDgfBcellcd19pC57bl6MAdult8wksSigRep1
- wgEncodeUwDgfTnaiveC57bl6MAdult8wksSigRep2
- wgEncodeUwDgfThymusC57bl6MAdult8wksSigRep1
- wgEncodeUwDgfTregaC57bl6MAdult8wksSigRep1
- wgEncodeUwDgfTnaiveC57bl6MAdult8wksSigRep1
- wgEncodeUwDgfZhbtc4129olaME0SigRep1
- wgEncodeUwDgf3134RiiiMImmortalSigRep1
- wgEncodeUwDgfWbrainC57bl6MAdult8wksSigRep1
- wgEncodeUwDgfRetinaC57bl6MNew1daysSigRep1
- wgEncodeUwDgfBcellcd43nC57bl6MAdult8wksSigRep1
- wgEncodeUwDgfEscj7129s1ME0SigRep1
- wgEncodeUwDgfTregC57bl6MAdult8wksSigRep1
- wgEncodeUwDgfLiverC57bl6MAdult8wksSigRep1
- wgEncodeUwDgfZhbtc4129olaME0Diffb24hSigRep1
- wgEncodeUwDgfMelUknImmortalSigRep1
- wgEncodeUwDgfLungC57bl6MAdult8wksSigRep1
- wgEncodeUwDgfHeartC57bl6MAdult8wksSigRep1
- wgEncodeUwDgfThelpaC57bl6MAdult8wksSigRep1
- wgEncodeUwDgf416bB6d2f1jImmortalSigRep1
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