Sample recapitulation of cell lineages

Description Sample recapitulation of cell lineages using accessibility as measured by DNase-seq. TSSs were found by applying TSScall (https://github.com/lavenderca/TSScall) to a Start-seq dataset from mouse ES cells (Williams et al. Mol Cell (2015); GSE43390). TSSs were used in an analysis considering hosted DNase-DGF data over multiple cell types.
Anchor center
Bin start -2500
Number of bins 50
Bin size 100
Public
Validated
Genome assembly mm9
Date created Sept. 12, 2016, 5:18 p.m.
Date updated Dec. 16, 2016, 10:54 a.m.
Feature list mESC 2016-06-29 cluster rep TSSs
Sort vector <none>
User datasets <none>
ENCODE datasets
  • wgEncodeUwDgfA20BalbcannMImmortalSigRep1
  • wgEncodeUwDgfKidneyC57bl6MAdult8wksSigRep1
  • wgEncodeUwDgfBcellcd19pC57bl6MAdult8wksSigRep1
  • wgEncodeUwDgfTnaiveC57bl6MAdult8wksSigRep2
  • wgEncodeUwDgfZhbtc4129olaME0SigRep1
  • wgEncodeUwDgf3134RiiiMImmortalSigRep1
  • wgEncodeUwDgfBcellcd43nC57bl6MAdult8wksSigRep1
  • wgEncodeUwDgfEscj7129s1ME0SigRep1
  • wgEncodeUwDgfLiverC57bl6MAdult8wksSigRep1
  • wgEncodeUwDgfZhbtc4129olaME0Diffb24hSigRep1
  • wgEncodeUwDgfLungC57bl6MAdult8wksSigRep1
  • wgEncodeUwDgf416bB6d2f1jImmortalSigRep1
  • wgEncodeUwDgfWbrainC57bl6ME14halfSigRep1
  • wgEncodeUwDgfNih3t3NihsMImmortalSigRep1
  • wgEncodeUwDgfThymusC57bl6MAdult8wksSigRep1
  • wgEncodeUwDgfTregaC57bl6MAdult8wksSigRep1
  • wgEncodeUwDgfTnaiveC57bl6MAdult8wksSigRep1
  • wgEncodeUwDgfWbrainC57bl6MAdult8wksSigRep1
  • wgEncodeUwDgfRetinaC57bl6MNew1daysSigRep1
  • wgEncodeUwDgfTregC57bl6MAdult8wksSigRep1
  • wgEncodeUwDgfMelUknImmortalSigRep1
  • wgEncodeUwDgfHeartC57bl6MAdult8wksSigRep1
  • wgEncodeUwDgfThelpaC57bl6MAdult8wksSigRep1