| Description |
Sample correlation of ChIP-seq data with gene expression. Gene expression information was taken from an RNA-seq experiment in mouse ES-Bruce4 cells performed by the Ren Lab for the ENCODE project. Expression was quantified using FPKM by the Cufflinks analysis packaged. FPKM values for each RefSeq gene were used as a sort vector with RefSeq TSSs used as a feature list. Analysis was run with ChIP-seq data in ES-Bruce4 cells.
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| Anchor |
center |
| Bin start |
-2500 |
| Number of bins |
50 |
| Bin size |
100 |
| Public |
|
| Validated |
|
| Genome assembly |
mm9 |
| Date created |
Sept. 19, 2016, 5:20 p.m. |
| Date updated |
Dec. 16, 2016, 1:52 p.m. |
| Feature list |
mm9_RefSeq_TSSs
|
| Sort vector |
RenLab RNAseq
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| User datasets |
<none>
|
| ENCODE datasets |
- wgEncodeLicrTfbsEsb4CtcfME0C57bl6StdSig
- wgEncodeLicrHistoneEsb4H3k27me3ME0C57bl6StdSig
- wgEncodeLicrTfbsEsb4P300ME0C57bl6StdSig
- wgEncodeLicrHistoneEsb4H3k4me1ME0C57bl6StdSig
- wgEncodeLicrTfbsEsb4Pol2ME0C57bl6StdSig
- wgEncodeLicrHistoneEsb4H3k36me3ME0C57bl6StdSig
- wgEncodeLicrHistoneEsb4H3k27acME0C57bl6StdSig
- wgEncodeLicrHistoneEsb4H3k4me3ME0C57bl6StdSig
- wgEncodeLicrHistoneEsb4H3k09me3ME0C57bl6StdSig
- wgEncodeLicrHistoneEsb4H3k09acME0C57bl6StdSig
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