Description |
Sample characterization of enhancers and promoters in mouse ES cells. TSSs were found by applying TSScall (https://github.com/lavenderca/TSScall) to a Start-seq dataset from mouse ES cells (Williams et al. Mol Cell (2015); GSE43390). Analysis was run with RNA-seq and ChIP-seq data from ES-Bruce4 cells. Input controls were not included in analysis.
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Anchor |
center |
Bin start |
-2500 |
Number of bins |
50 |
Bin size |
100 |
Public |
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Validated |
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Genome assembly |
mm9 |
Date created |
Sept. 21, 2016, 9:50 a.m. |
Date updated |
Dec. 16, 2016, 1:40 p.m. |
Feature list |
mESC 2016-06-29 cluster rep TSSs
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Sort vector |
<none>
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User datasets |
<none>
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ENCODE datasets |
- wgEncodeLicrTfbsEsb4CtcfME0C57bl6StdSig
- wgEncodeLicrHistoneEsb4H3k27me3ME0C57bl6StdSig
- wgEncodeLicrTfbsEsb4P300ME0C57bl6StdSig
- wgEncodeLicrHistoneEsb4H3k4me1ME0C57bl6StdSig
- wgEncodeLicrTfbsEsb4Pol2ME0C57bl6StdSig
- wgEncodeLicrHistoneEsb4H3k36me3ME0C57bl6StdSig
- wgEncodeLicrHistoneEsb4H3k27acME0C57bl6StdSig
- wgEncodeLicrRnaSeqEsb4CellPapME0C57bl6SigRep1
- wgEncodeLicrHistoneEsb4H3k4me3ME0C57bl6StdSig
- wgEncodeLicrRnaSeqEsb4CellPapME0C57bl6SigRep2
- wgEncodeLicrHistoneEsb4H3k09me3ME0C57bl6StdSig
- wgEncodeLicrHistoneEsb4H3k09acME0C57bl6StdSig
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