Description |
Sample validation of H3K27ac ChIP-seq data. For the test dataset, a validated H3K27ac ChIP-seq dataset in ES-Bruce4 cells generated by the Ren Lab for the ENCODE project was used. The test data was then run against all other H3K27ac data, as well as data from input controls and the mutually exclusive H3K27me3 mark. RefSeq TSSs were used as the feature list.
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Anchor |
center |
Bin start |
-2500 |
Number of bins |
50 |
Bin size |
100 |
Public |
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Validated |
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Genome assembly |
mm9 |
Date created |
Oct. 12, 2016, 10:19 a.m. |
Date updated |
Dec. 16, 2016, 1:56 p.m. |
Feature list |
mm9_RefSeq_TSSs
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Sort vector |
<none>
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User datasets |
- ES-Bruce4 Input rep2
- ES-Bruce4 Input rep1
- ES-Bruce4 H3K27ac rep2
- ES-Bruce4 H3K27ac rep1
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ENCODE datasets |
- wgEncodeLicrHistoneLiverInputMAdult8wksC57bl6StdSig
- wgEncodeLicrHistoneLiverH3k27acMAdult8wksC57bl6StdSig
- wgEncodeLicrHistoneHeartH3k27acMAdult8wksC57bl6StdSig
- wgEncodeLicrHistoneHeartInputMAdult8wksC57bl6StdSig
- wgEncodeLicrHistoneSpleenH3k27acMAdult8wksC57bl6StdSig
- wgEncodeLicrHistoneKidneyInputMAdult8wksC57bl6StdSig
- wgEncodeLicrHistoneKidneyH3k27acMAdult8wksC57bl6StdSig
- wgEncodeLicrHistoneSpleenInputMAdult8wksC57bl6StdSig
- wgEncodeLicrHistoneSpleenH3k27me3MAdlt8wC57bl6StdSig
- wgEncodeLicrHistoneKidneyH3k27me3MAdult8wksC57bl6StdSig
- wgEncodeLicrHistoneHeartH3k27me3MAdult8wksC57bl6StdSig
- wgEncodeLicrHistoneLiverH3k27me3MAdult8wksC57bl6StdSig
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