| Description |
Sample validation of CTCF ChIP-seq data. For the test dataset, a validated CTCF ChIP-seq dataset in ES-Bruce4 cells generated by the Ren Lab for the ENCODE project was used. The test data was then run against all other CTCF ChIP-seq datasets hosted on ORIO. RefSeq TSSs were used as the feature list.
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| Anchor |
center |
| Bin start |
-2500 |
| Number of bins |
50 |
| Bin size |
100 |
| Public |
|
| Validated |
|
| Genome assembly |
mm9 |
| Date created |
Dec. 13, 2016, 3:53 p.m. |
| Date updated |
Dec. 16, 2016, 10:37 a.m. |
| Feature list |
mm9_RefSeq_TSSs
|
| Sort vector |
<none>
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| User datasets |
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| ENCODE datasets |
- wgEncodeLicrTfbsCbellumCtcfMAdult8wksC57bl6StdSig
- wgEncodeLicrTfbsBmarrowCtcfMAdult8wksC57bl6StdSig
- wgEncodeLicrTfbsLimbCtcfUE14halfC57bl6StdSig
- wgEncodeLicrTfbsThymusCtcfMAdult8wksC57bl6StdSig
- wgEncodeLicrTfbsEsb4CtcfME0C57bl6StdSig
- wgEncodePsuTfbsG1eer4e2CtcfME0S129InputRepSignalRep2
- wgEncodeLicrTfbsLungCtcfMAdult8wksC57bl6StdSig
- wgEncodeLicrTfbsHeartCtcfMAdult8wksC57bl6StdSig
- wgEncodeLicrTfbsWbrainCtcfUE14halfC57bl6StdSig
- wgEncodeLicrTfbsOlfactCtcfMAdult8wksC57bl6StdSig
- wgEncodeLicrTfbsSmintCtcfMAdult8wksC57bl6StdSig
- wgEncodePsuTfbsG1eer4e2CtcfME0S129InputRepSignalRep1
- wgEncodeLicrTfbsTestisCtcfMAdult8wksC57bl6StdSig
- wgEncodeLicrTfbsMelCtcfMImmortalC57bl6StdSig
- wgEncodePsuTfbsCh12CtcfFImmortal2a4bInputRepSignalRep1
- wgEncodePsuTfbsCh12CtcfFImmortal2a4bInputSig
- wgEncodePsuTfbsCh12CtcfFImmortal2a4bInputRepSignalRep2
- wgEncodeLicrTfbsBmdmCtcfFAdult8wksC57bl6StdSig
- wgEncodePsuTfbsG1eCtcfME0S129InputRepSignalRep1
- wgEncodeLicrTfbsKidneyCtcfMAdult8wksC57bl6StdSig
- wgEncodePsuTfbsMelCtcfMImmortalC57bl6InputRepSignalRep2
- wgEncodeLicrTfbsCortexCtcfMAdult8wksC57bl6StdSig
- wgEncodeLicrTfbsSpleenCtcfMAdult8wksC57bl6StdSig
- wgEncodeLicrTfbsMefCtcfMAdult8wksC57bl6StdSig
- wgEncodePsuTfbsG1eCtcfME0S129InputSig
- wgEncodePsuTfbsG1eCtcfME0S129InputRepSignalRep2
- wgEncodePsuTfbsMelCtcfMImmortalC57bl6InputSig
- wgEncodePsuTfbsMelCtcfMImmortalC57bl6InputRepSignalRep1
- wgEncodeLicrTfbsLiverCtcfMAdult8wksC57bl6StdSig
- wgEncodeCaltechTfbsC2c12CtcfFCntrl32bPcr2xSigRep1
- wgEncodePsuTfbsG1eer4e2CtcfME0S129InputSig
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