Details for gene set KEGG_PEROXISOME[GSEA]

Table: GSEA Results Summary

Dataset	preliminary.phenotype.cls#LG_versus_HG.phenotype.cls#LG_versus_HG_repos
Phenotype	phenotype.cls#LG_versus_HG_repos
Upregulated in class	HG
GeneSet	KEGG_PEROXISOME
Enrichment Score (ES)	-0.34536755
Normalized Enrichment Score (NES)	-1.2858629
Nominal p-value	0.07967033
FDR q-value	0.38332382
FWER p-Value	0.999

Fig 1: Enrichment plot: KEGG_PEROXISOME   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

Table: GSEA details [plain text format]

	PROBE	DESCRIPTION (from dataset)	GENE SYMBOL	GENE_TITLE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	ACOX2	Acox2			306	2.076	0.0326	No
2	XDH	Xdh			507	1.760	0.0640	No
3	ACOX3	Acox3			1506	1.003	0.0247	No
4	ACSL1	Acsl1			1790	0.899	0.0290	No
5	ACOX1	Acox1			1797	0.895	0.0512	No
6	CAT	Cat			1979	0.839	0.0607	No
7	DECR2	Decr2			2350	0.740	0.0554	No
8	MPV17	Mpv17			2479	0.701	0.0648	No
9	BAAT	Baat			2532	0.683	0.0786	No
10	CROT	Crot			2721	0.637	0.0825	No
11	EHHADH	Ehhadh			3035	0.564	0.0765	No
12	PHYH	Phyh			3216	0.532	0.0783	No
13	MLYCD	Mlycd			3495	0.486	0.0725	No
14	PECR	Pecr			3797	0.434	0.0640	No
15	NUDT19	Nudt19			3932	0.424	0.0660	No
16	PIPOX	Pipox			4169	0.407	0.0610	No
17	ACSL5	Acsl5			4274	0.398	0.0643	No
18	PEX16	Pex16			4296	0.395	0.0729	No
19	PEX11A	Pex11a			4388	0.382	0.0767	No
20	ACOT8	Acot8			4768	0.317	0.0601	No
21	CRAT	Crat			4894	0.298	0.0596	No
22	IDH1	Idh1			5327	0.245	0.0378	No
23	PEX14	Pex14			5347	0.243	0.0427	No
24	SOD2	Sod2			5865	0.173	0.0136	No
25	MVK	Mvk			5901	0.168	0.0155	No
26	FAR2	Far2			6332	0.120	-0.0093	No
27	AGPS	Agps			6360	0.117	-0.0081	No
28	PEX6	Pex6			6499	0.101	-0.0145	No
29	ABCD3	Abcd3			6534	0.097	-0.0142	No
30	ABCD4	Abcd4			6623	0.087	-0.0177	No
31	PXMP2	Pxmp2			6787	0.068	-0.0266	No
32	PEX11B	Pex11b			6875	0.059	-0.0307	No
33	PEX1	Pex1			6962	0.050	-0.0350	No
34	SOD1	Sod1			7004	0.046	-0.0365	No
35	FAR1	Far1			7092	0.035	-0.0412	No
36	ABCD1	Abcd1			7263	0.018	-0.0518	No
37	ACAA1	Acaa1a			7409	0.003	-0.0611	No
38	GSTK1	Gstk1			7432	0.000	-0.0625	No
39	HAO2	Hao2			7652	0.000	-0.0767	No
40	PEX7	Pex7			7927	-0.002	-0.0944	No
41	HMGCL	Hmgcl			8678	-0.072	-0.1411	No
42	PEX5	Pex5			9037	-0.109	-0.1615	No
43	PEX26	Pex26			9313	-0.136	-0.1759	No
44	ECI2	Eci2			9318	-0.136	-0.1727	No
45	PEX3	Pex3			9342	-0.138	-0.1707	No
46	PRDX5	Prdx5			9453	-0.148	-0.1741	No
47	PEX19	Pex19			9621	-0.166	-0.1807	No
48	PEX13	Pex13			9645	-0.169	-0.1779	No
49	HSD17B4	Hsd17b4			9765	-0.180	-0.1811	No
50	PEX2	Pex2			9999	-0.203	-0.1911	No
51	PEX12	Pex12			10693	-0.275	-0.2290	No
52	PRDX1	Prdx1			10906	-0.296	-0.2352	No
53	PEX11G	Pex11g			11162	-0.326	-0.2435	No
54	DAO	Dao			11187	-0.329	-0.2368	No
55	GNPAT	Gnpat			11327	-0.344	-0.2371	No
56	IDH2	Idh2			11364	-0.349	-0.2306	No
57	DDO	Ddo			12063	-0.424	-0.2651	No
58	SLC25A17	Slc25a17			12306	-0.442	-0.2696	No
59	PXMP4	Pxmp4			12707	-0.502	-0.2829	No
60	SCP2	Scp2			13008	-0.554	-0.2883	No
61	PEX10	Pex10			13319	-0.624	-0.2926	No
62	SLC27A2	Slc27a2			14135	-0.860	-0.3237	Yes
63	NOS2	Nos2			14138	-0.860	-0.3021	Yes
64	ECH1	Ech1			14225	-0.892	-0.2852	Yes
65	AMACR	Amacr			14320	-0.934	-0.2677	Yes
66	NUDT12	Nudt12			14400	-0.971	-0.2483	Yes
67	ACSL4	Acsl4			14550	-1.055	-0.2314	Yes
68	PMVK	Pmvk			14631	-1.107	-0.2087	Yes
69	MPV17L	Mpv17l			14635	-1.111	-0.1808	Yes
70	HACL1	Hacl1			14865	-1.331	-0.1621	Yes
71	EPHX2	Ephx2			15019	-1.529	-0.1334	Yes
72	ACSL3	Acsl3			15194	-1.845	-0.0981	Yes
73	ABCD2	Abcd2			15260	-2.018	-0.0515	Yes
74	HAO1	Hao1			15424	-2.718	0.0065	Yes

Fig 2: KEGG_PEROXISOME   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet

Fig 3: KEGG_PEROXISOME: Random ES distribution   
Gene set null distribution of ES for KEGG_PEROXISOME