Details for gene set KEGG_THYROID_CANCER[GSEA]

Table: GSEA Results Summary

Dataset	preliminary.phenotype.cls#LG_versus_HG.phenotype.cls#LG_versus_HG_repos
Phenotype	phenotype.cls#LG_versus_HG_repos
Upregulated in class	LG
GeneSet	KEGG_THYROID_CANCER
Enrichment Score (ES)	0.48788285
Normalized Enrichment Score (NES)	1.413112
Nominal p-value	0.07472178
FDR q-value	0.26692677
FWER p-Value	0.994

Fig 1: Enrichment plot: KEGG_THYROID_CANCER   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

Table: GSEA details [plain text format]

	PROBE	DESCRIPTION (from dataset)	GENE SYMBOL	GENE_TITLE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	LEF1	Lef1			233	2.262	0.1274	Yes
2	RET	Ret			315	2.066	0.2523	Yes
3	NTRK1	Ntrk1			528	1.731	0.3477	Yes
4	PPARG	Pparg			931	1.346	0.4065	Yes
5	PAX8	Pax8			1940	0.850	0.3950	Yes
6	TCF7L1	Tcf7l1			2058	0.823	0.4393	Yes
7	HRAS	Hras			2180	0.791	0.4813	Yes
8	TCF7L2	Tcf7l2			2704	0.641	0.4879	Yes
9	NRAS	Nras			3680	0.455	0.4536	No
10	KRAS	Kras			5181	0.266	0.3736	No
11	RXRA	Rxra			5938	0.164	0.3352	No
12	CTNNB1	Ctnnb1			6545	0.096	0.3021	No
13	MAPK3	Mapk3			7199	0.024	0.2615	No
14	MAPK1	Mapk1			8316	-0.037	0.1918	No
15	TPM3	Tpm3			8861	-0.088	0.1622	No
16	TCF7	Tcf7			9125	-0.118	0.1526	No
17	BRAF	Braf			9178	-0.123	0.1570	No
18	NCOA4	Ncoa4			9449	-0.148	0.1489	No
19	CDH1	Cdh1			9823	-0.185	0.1365	No
20	TP53	Trp53			9983	-0.202	0.1389	No
21	CCDC6	Ccdc6			10049	-0.209	0.1479	No
22	MYC	Myc			10357	-0.240	0.1432	No
23	CCND1	Ccnd1			10950	-0.301	0.1240	No
24	RXRB	Rxrb			11446	-0.359	0.1146	No
25	TFG	Tfg			11888	-0.413	0.1122	No
26	TPR	Tpr			12697	-0.501	0.0916	No
27	MAP2K1	Map2k1			13134	-0.581	0.1001	No
28	RXRG	Rxrg			14137	-0.860	0.0896	No

Fig 2: KEGG_THYROID_CANCER   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet

Fig 3: KEGG_THYROID_CANCER: Random ES distribution   
Gene set null distribution of ES for KEGG_THYROID_CANCER