Details for gene set KEGG_VIBRIO_CHOLERAE_INFECTION[GSEA]

Table: GSEA Results Summary

Dataset	preliminary.phenotype.cls#LG_versus_HG.phenotype.cls#LG_versus_HG_repos
Phenotype	phenotype.cls#LG_versus_HG_repos
Upregulated in class	LG
GeneSet	KEGG_VIBRIO_CHOLERAE_INFECTION
Enrichment Score (ES)	0.43690822
Normalized Enrichment Score (NES)	1.4064605
Nominal p-value	0.055205047
FDR q-value	0.26459995
FWER p-Value	0.996

Fig 1: Enrichment plot: KEGG_VIBRIO_CHOLERAE_INFECTION   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

Table: GSEA details [plain text format]

	PROBE	DESCRIPTION (from dataset)	GENE SYMBOL	GENE_TITLE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	PLCG2	Plcg2			551	1.717	0.0074	Yes
2	ATP6V0B	Atp6v0b			684	1.564	0.0381	Yes
3	ATP6V0D1	Atp6v0d1			720	1.529	0.0741	Yes
4	ATP6V1A	Atp6v1a			968	1.319	0.0912	Yes
5	ATP6V1F	Atp6v1f			973	1.317	0.1240	Yes
6	ATP6AP1	Atp6ap1			994	1.304	0.1553	Yes
7	PRKCG	Prkcg			996	1.303	0.1879	Yes
8	ATP6V1G1	Atp6v1g1			1046	1.261	0.2164	Yes
9	ATP6V1B2	Atp6v1b2			1067	1.247	0.2463	Yes
10	ATP6V1D	Atp6v1d			1297	1.100	0.2591	Yes
11	PDIA4	Pdia4			1414	1.049	0.2779	Yes
12	ATP6V1C1	Atp6v1c1			1491	1.008	0.2982	Yes
13	TCIRG1	Tcirg1			1552	0.985	0.3190	Yes
14	ATP6V1H	Atp6v1h			1666	0.945	0.3354	Yes
15	ATP6V1G2	Atp6v1g2			1971	0.843	0.3369	Yes
16	ATP6V1E1	Atp6v1e1			2158	0.797	0.3448	Yes
17	ATP6V0E2	Atp6v0e2			2279	0.764	0.3562	Yes
18	ATP6V0C	Atp6v0c			2362	0.737	0.3694	Yes
19	ADCY9	Adcy9			2390	0.729	0.3859	Yes
20	KDELR3	Kdelr3			2533	0.683	0.3938	Yes
21	ADCY3	Adcy3			2687	0.646	0.4001	Yes
22	ERO1A	Ero1l			2724	0.637	0.4137	Yes
23	ATP6V0E1	Atp6v0e			3073	0.557	0.4052	Yes
24	ATP6V0A1	Atp6v0a1			3146	0.543	0.4142	Yes
25	ATP6V0A2	Atp6v0a2			3190	0.536	0.4248	Yes
26	ATP6V0A4	Atp6v0a4			3241	0.528	0.4348	Yes
27	ATP6V1C2	Atp6v1c2			3402	0.497	0.4369	Yes
28	SEC61B	Gm10320			3812	0.432	0.4213	No
29	SEC61A1	Sec61a1			4046	0.419	0.4167	No
30	GNAS	Gnas			5004	0.286	0.3621	No
31	SEC61A2	Sec61a2			5222	0.259	0.3545	No
32	SEC61G	Sec61g			8610	-0.066	0.1374	No
33	KDELR2	Kdelr2			8711	-0.075	0.1328	No
34	ARF1	Arf1			8992	-0.103	0.1173	No
35	PLCG1	Plcg1			9622	-0.167	0.0808	No
36	KDELR1	Kdelr1			10102	-0.214	0.0552	No
37	PRKACB	Prkacb			10431	-0.249	0.0403	No
38	ACTG1	Actg1			10670	-0.272	0.0317	No
39	SLC12A2	Slc12a2			10784	-0.285	0.0316	No
40	TJP1	Tjp1			11113	-0.321	0.0184	No
41	ACTB	Actb			11649	-0.382	-0.0066	No
42	PRKACA	Prkaca			12054	-0.424	-0.0220	No
43	KCNQ1	Kcnq1			12669	-0.499	-0.0492	No
44	CFTR	Cftr			13614	-0.701	-0.0926	No
45	PRKCA	Prkca			14737	-1.199	-0.1351	No
46	ATP6V1B1	Atp6v1b1			15237	-1.959	-0.1182	No
47	ATP6V0D2	Atp6v0d2			15389	-2.504	-0.0653	No
48	PRKCB	Prkcb			15461	-2.954	0.0041	No

Fig 2: KEGG_VIBRIO_CHOLERAE_INFECTION   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet

Fig 3: KEGG_VIBRIO_CHOLERAE_INFECTION: Random ES distribution   
Gene set null distribution of ES for KEGG_VIBRIO_CHOLERAE_INFECTION