Details for gene set KEGG_EPITHELIAL_CELL_SIGNALING_IN_HELICOBACTER_PYLORI_INFECTION[GSEA]

Table: GSEA Results Summary

Dataset	preliminary.phenotype.cls#NG_versus_HG.phenotype.cls#NG_versus_HG_repos
Phenotype	phenotype.cls#NG_versus_HG_repos
Upregulated in class	NG
GeneSet	KEGG_EPITHELIAL_CELL_SIGNALING_IN_HELICOBACTER_PYLORI_INFECTION
Enrichment Score (ES)	0.44259438
Normalized Enrichment Score (NES)	1.589257
Nominal p-value	0.0023980816
FDR q-value	0.13239923
FWER p-Value	0.56

Fig 1: Enrichment plot: KEGG_EPITHELIAL_CELL_SIGNALING_IN_HELICOBACTER_PYLORI_INFECTION   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

Table: GSEA details [plain text format]

	PROBE	DESCRIPTION (from dataset)	GENE SYMBOL	GENE_TITLE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	ATP6V0B	Atp6v0b			326	2.960	0.0162	Yes
2	F11R	F11r			338	2.941	0.0525	Yes
3	ATP6V1A	Atp6v1a			398	2.800	0.0840	Yes
4	PLCG2	Plcg2			488	2.619	0.1112	Yes
5	ATP6V0D1	Atp6v0d1			505	2.590	0.1428	Yes
6	ATP6V1D	Atp6v1d			606	2.422	0.1668	Yes
7	LYN	Lyn			678	2.307	0.1912	Yes
8	ATP6V1F	Atp6v1f			685	2.295	0.2198	Yes
9	ATP6AP1	Atp6ap1			777	2.216	0.2418	Yes
10	ATP6V1B2	Atp6v1b2			810	2.172	0.2671	Yes
11	ATP6V1C1	Atp6v1c1			916	2.032	0.2859	Yes
12	GIT1	Git1			1003	1.942	0.3047	Yes
13	ATP6V1G1	Atp6v1g1			1072	1.876	0.3240	Yes
14	ATP6V0C	Atp6v0c			1074	1.875	0.3475	Yes
15	ATP6V1E1	Atp6v1e1			1257	1.740	0.3577	Yes
16	ATP6V1H	Atp6v1h			1338	1.675	0.3736	Yes
17	TCIRG1	Tcirg1			1341	1.672	0.3945	Yes
18	IKBKG	Ikbkg			1361	1.649	0.4140	Yes
19	CXCR2	Cxcr2			1416	1.605	0.4308	Yes
20	ATP6V0E1	Atp6v0e			1575	1.503	0.4395	Yes
21	JAM3	Jam3			1795	1.373	0.4426	Yes
22	IKBKB	Ikbkb			2487	1.048	0.4111	No
23	ATP6V0A1	Atp6v0a1			2713	0.963	0.4087	No
24	ATP6V0E2	Atp6v0e2			2895	0.900	0.4083	No
25	PLCG1	Plcg1			3156	0.826	0.4019	No
26	MAPK12	Mapk12			3239	0.803	0.4067	No
27	MAPK10	Mapk10			3880	0.629	0.3733	No
28	ADAM10	Adam10			3918	0.620	0.3787	No
29	CHUK	Chuk			4201	0.548	0.3673	No
30	MAPK11	Mapk11			4459	0.501	0.3570	No
31	RELA	Rela			5054	0.426	0.3240	No
32	MAPK8	Mapk8			5645	0.310	0.2897	No
33	ATP6V0A2	Atp6v0a2			5843	0.277	0.2805	No
34	NOD1	Nod1			6097	0.227	0.2670	No
35	CSK	Csk			6745	0.106	0.2265	No
36	NFKBIA	Nfkbia			7373	0.013	0.1861	No
37	ADAM17	Adam17			8776	-0.140	0.0972	No
38	ATP6V1G2	Atp6v1g2			9118	-0.199	0.0777	No
39	SRC	Src			9120	-0.199	0.0801	No
40	CDC42	Cdc42			9285	-0.228	0.0724	No
41	MAP2K4	Map2k4			9633	-0.297	0.0537	No
42	TJP1	Tjp1			9842	-0.340	0.0445	No
43	MAPK9	Mapk9			9981	-0.369	0.0402	No
44	MAPK14	Mapk14			10069	-0.384	0.0394	No
45	MAPK13	Mapk13			10342	-0.423	0.0272	No
46	ATP6V0A4	Atp6v0a4			10462	-0.428	0.0249	No
47	ATP6V1C2	Atp6v1c2			11120	-0.529	-0.0109	No
48	RAC1	Rac1			11474	-0.610	-0.0261	No
49	JAM2	Jam2			12081	-0.780	-0.0554	No
50	ATP6V1B1	Atp6v1b1			12128	-0.791	-0.0485	No
51	PTPN11	Ptpn11			12241	-0.819	-0.0454	No
52	CASP3	Casp3			13319	-1.187	-0.1001	No
53	MET	Met			13331	-1.194	-0.0858	No
54	PAK1	Pak1			13387	-1.226	-0.0739	No
55	NFKB1	Nfkb1			13962	-1.572	-0.0912	No
56	EGFR	Egfr			14212	-1.772	-0.0850	No
57	HBEGF	Hbegf			14288	-1.837	-0.0667	No
58	JUN	Jun			14653	-2.336	-0.0608	No
59	MAP3K14	Map3k14			14707	-2.419	-0.0338	No
60	CCL5	Ccl5			14866	-2.689	-0.0101	No
61	ATP6V0D2	Atp6v0d2			15409	-4.183	0.0075	No

Fig 2: KEGG_EPITHELIAL_CELL_SIGNALING_IN_HELICOBACTER_PYLORI_INFECTION   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet

Fig 3: KEGG_EPITHELIAL_CELL_SIGNALING_IN_HELICOBACTER_PYLORI_INFECTION: Random ES distribution   
Gene set null distribution of ES for KEGG_EPITHELIAL_CELL_SIGNALING_IN_HELICOBACTER_PYLORI_INFECTION