Details for gene set KEGG_VIBRIO_CHOLERAE_INFECTION[GSEA]

Table: GSEA Results Summary

Dataset	preliminary.phenotype.cls#NG_versus_HG.phenotype.cls#NG_versus_HG_repos
Phenotype	phenotype.cls#NG_versus_HG_repos
Upregulated in class	NG
GeneSet	KEGG_VIBRIO_CHOLERAE_INFECTION
Enrichment Score (ES)	0.40636224
Normalized Enrichment Score (NES)	1.3745201
Nominal p-value	0.05764967
FDR q-value	0.25979942
FWER p-Value	0.989

Fig 1: Enrichment plot: KEGG_VIBRIO_CHOLERAE_INFECTION   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

Table: GSEA details [plain text format]

	PROBE	DESCRIPTION (from dataset)	GENE SYMBOL	GENE_TITLE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	ATP6V0B	Atp6v0b			326	2.960	0.0252	Yes
2	ATP6V1A	Atp6v1a			398	2.800	0.0644	Yes
3	PLCG2	Plcg2			488	2.619	0.0996	Yes
4	ATP6V0D1	Atp6v0d1			505	2.590	0.1390	Yes
5	ATP6V1D	Atp6v1d			606	2.422	0.1704	Yes
6	ATP6V1F	Atp6v1f			685	2.295	0.2013	Yes
7	ATP6AP1	Atp6ap1			777	2.216	0.2300	Yes
8	ATP6V1B2	Atp6v1b2			810	2.172	0.2619	Yes
9	ATP6V1C1	Atp6v1c1			916	2.032	0.2869	Yes
10	ATP6V1G1	Atp6v1g1			1072	1.876	0.3062	Yes
11	ATP6V0C	Atp6v0c			1074	1.875	0.3355	Yes
12	ATP6V1E1	Atp6v1e1			1257	1.740	0.3509	Yes
13	ATP6V1H	Atp6v1h			1338	1.675	0.3719	Yes
14	TCIRG1	Tcirg1			1341	1.672	0.3979	Yes
15	ATP6V0E1	Atp6v0e			1575	1.503	0.4064	Yes
16	PDIA4	Pdia4			2323	1.121	0.3756	No
17	ATP6V0A1	Atp6v0a1			2713	0.963	0.3656	No
18	ATP6V0E2	Atp6v0e2			2895	0.900	0.3679	No
19	ADCY9	Adcy9			2906	0.895	0.3813	No
20	ERO1A	Ero1l			3074	0.851	0.3838	No
21	PLCG1	Plcg1			3156	0.826	0.3915	No
22	PRKCG	Prkcg			3309	0.781	0.3939	No
23	SEC61A2	Sec61a2			3825	0.643	0.3706	No
24	SLC12A2	Slc12a2			4385	0.515	0.3426	No
25	ADCY3	Adcy3			5512	0.336	0.2751	No
26	SEC61B	Gm10320			5687	0.302	0.2686	No
27	GNAS	Gnas			5733	0.294	0.2703	No
28	ATP6V0A2	Atp6v0a2			5843	0.277	0.2675	No
29	SEC61G	Sec61g			8588	-0.106	0.0919	No
30	KDELR1	Kdelr1			8728	-0.130	0.0850	No
31	ATP6V1G2	Atp6v1g2			9118	-0.199	0.0629	No
32	TJP1	Tjp1			9842	-0.340	0.0215	No
33	KDELR3	Kdelr3			9903	-0.354	0.0232	No
34	ATP6V0A4	Atp6v0a4			10462	-0.428	-0.0062	No
35	ARF1	Arf1			11079	-0.521	-0.0378	No
36	ATP6V1C2	Atp6v1c2			11120	-0.529	-0.0321	No
37	ATP6V1B1	Atp6v1b1			12128	-0.791	-0.0848	No
38	SEC61A1	Sec61a1			12183	-0.806	-0.0757	No
39	KCNQ1	Kcnq1			12715	-0.946	-0.0952	No
40	ACTB	Actb			13151	-1.112	-0.1059	No
41	PRKACA	Prkaca			13202	-1.133	-0.0915	No
42	PRKACB	Prkacb			13228	-1.145	-0.0752	No
43	ACTG1	Actg1			13360	-1.209	-0.0647	No
44	PRKCA	Prkca			13464	-1.260	-0.0517	No
45	KDELR2	Kdelr2			13930	-1.549	-0.0575	No
46	CFTR	Cftr			13939	-1.558	-0.0337	No
47	ATP6V0D2	Atp6v0d2			15409	-4.183	-0.0632	No
48	PRKCB	Prkcb			15495	-4.518	0.0019	No

Fig 2: KEGG_VIBRIO_CHOLERAE_INFECTION   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet

Fig 3: KEGG_VIBRIO_CHOLERAE_INFECTION: Random ES distribution   
Gene set null distribution of ES for KEGG_VIBRIO_CHOLERAE_INFECTION