Details for gene set KEGG_EPITHELIAL_CELL_SIGNALING_IN_HELICOBACTER_PYLORI_INFECTION[GSEA]

Table: GSEA Results Summary

Dataset	preliminary.phenotype.cls#NG_versus_LG.phenotype.cls#NG_versus_LG_repos
Phenotype	phenotype.cls#NG_versus_LG_repos
Upregulated in class	NG
GeneSet	KEGG_EPITHELIAL_CELL_SIGNALING_IN_HELICOBACTER_PYLORI_INFECTION
Enrichment Score (ES)	0.43525934
Normalized Enrichment Score (NES)	1.6933173
Nominal p-value	0.0
FDR q-value	0.08404922
FWER p-Value	0.263

Fig 1: Enrichment plot: KEGG_EPITHELIAL_CELL_SIGNALING_IN_HELICOBACTER_PYLORI_INFECTION   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

Table: GSEA details [plain text format]

	PROBE	DESCRIPTION (from dataset)	GENE SYMBOL	GENE_TITLE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	CXCR2	Cxcr2			188	2.261	0.0346	Yes
2	ATP6V1A	Atp6v1a			441	1.737	0.0543	Yes
3	ATP6V0B	Atp6v0b			461	1.713	0.0885	Yes
4	ATP6V1D	Atp6v1d			697	1.480	0.1040	Yes
5	ATP6V0D1	Atp6v0d1			1008	1.261	0.1100	Yes
6	GIT1	Git1			1071	1.224	0.1313	Yes
7	ATP6V0C	Atp6v0c			1123	1.204	0.1530	Yes
8	ATP6V1C1	Atp6v1c1			1309	1.114	0.1641	Yes
9	ATP6V1F	Atp6v1f			1318	1.112	0.1866	Yes
10	PLCG2	Plcg2			1349	1.099	0.2074	Yes
11	IKBKG	Ikbkg			1409	1.077	0.2259	Yes
12	ATP6V1B2	Atp6v1b2			1502	1.037	0.2414	Yes
13	ATP6AP1	Atp6ap1			1516	1.032	0.2619	Yes
14	ATP6V1E1	Atp6v1e1			1608	0.998	0.2767	Yes
15	PLCG1	Plcg1			1638	0.987	0.2952	Yes
16	ATP6V0E1	Atp6v0e			1654	0.978	0.3145	Yes
17	F11R	F11r			1790	0.936	0.3252	Yes
18	LYN	Lyn			2070	0.854	0.3248	Yes
19	CHUK	Chuk			2135	0.833	0.3379	Yes
20	ATP6V1H	Atp6v1h			2325	0.779	0.3418	Yes
21	IKBKB	Ikbkb			2340	0.774	0.3569	Yes
22	ADAM17	Adam17			2356	0.770	0.3719	Yes
23	JAM3	Jam3			2398	0.757	0.3849	Yes
24	TCIRG1	Tcirg1			2492	0.736	0.3941	Yes
25	ATP6V1B1	Atp6v1b1			2531	0.728	0.4067	Yes
26	ADAM10	Adam10			2719	0.686	0.4088	Yes
27	MAPK10	Mapk10			2739	0.681	0.4217	Yes
28	ATP6V1G1	Atp6v1g1			2748	0.679	0.4353	Yes
29	MAPK8	Mapk8			3986	0.468	0.3650	No
30	ATP6V0A1	Atp6v0a1			4347	0.429	0.3506	No
31	RELA	Rela			4444	0.415	0.3530	No
32	SRC	Src			5536	0.248	0.2876	No
33	NFKBIA	Nfkbia			5932	0.188	0.2659	No
34	ATP6V0E2	Atp6v0e2			6269	0.140	0.2471	No
35	MAPK12	Mapk12			6820	0.065	0.2128	No
36	JAM2	Jam2			6918	0.052	0.2076	No
37	TJP1	Tjp1			7982	-0.020	0.1393	No
38	CSK	Csk			8130	-0.043	0.1307	No
39	CDC42	Cdc42			8435	-0.086	0.1128	No
40	MAPK13	Mapk13			9159	-0.190	0.0700	No
41	CASP3	Casp3			9177	-0.192	0.0729	No
42	RAC1	Rac1			9562	-0.252	0.0533	No
43	ATP6V0A2	Atp6v0a2			9618	-0.261	0.0551	No
44	MAP2K4	Map2k4			9737	-0.280	0.0533	No
45	MAPK11	Mapk11			10363	-0.382	0.0208	No
46	NOD1	Nod1			10384	-0.386	0.0275	No
47	PTPN11	Ptpn11			10836	-0.428	0.0072	No
48	MET	Met			10971	-0.436	0.0075	No
49	NFKB1	Nfkb1			11113	-0.463	0.0080	No
50	MAPK9	Mapk9			11878	-0.588	-0.0292	No
51	MAPK14	Mapk14			12063	-0.629	-0.0281	No
52	PAK1	Pak1			12137	-0.646	-0.0194	No
53	CCL5	Ccl5			13106	-0.868	-0.0641	No
54	ATP6V1C2	Atp6v1c2			13292	-0.924	-0.0569	No
55	HBEGF	Hbegf			13599	-1.030	-0.0554	No
56	ATP6V0A4	Atp6v0a4			13667	-1.055	-0.0379	No
57	ATP6V1G2	Atp6v1g2			13874	-1.136	-0.0277	No
58	EGFR	Egfr			13968	-1.184	-0.0092	No
59	MAP3K14	Map3k14			14142	-1.290	0.0063	No
60	JUN	Jun			14761	-1.775	0.0031	No
61	ATP6V0D2	Atp6v0d2			15045	-2.233	0.0310	No

Fig 2: KEGG_EPITHELIAL_CELL_SIGNALING_IN_HELICOBACTER_PYLORI_INFECTION   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet

Fig 3: KEGG_EPITHELIAL_CELL_SIGNALING_IN_HELICOBACTER_PYLORI_INFECTION: Random ES distribution   
Gene set null distribution of ES for KEGG_EPITHELIAL_CELL_SIGNALING_IN_HELICOBACTER_PYLORI_INFECTION