Details for gene set KEGG_EPITHELIAL_CELL_SIGNALING_IN_HELICOBACTER_PYLORI_INFECTION[GSEA]

Table: GSEA Results Summary

Dataset	preliminary.phenotype.cls#NGP_versus_HG.phenotype.cls#NGP_versus_HG_repos
Phenotype	phenotype.cls#NGP_versus_HG_repos
Upregulated in class	NGP
GeneSet	KEGG_EPITHELIAL_CELL_SIGNALING_IN_HELICOBACTER_PYLORI_INFECTION
Enrichment Score (ES)	0.42459857
Normalized Enrichment Score (NES)	1.6684622
Nominal p-value	0.0
FDR q-value	0.39487472
FWER p-Value	0.156

Fig 1: Enrichment plot: KEGG_EPITHELIAL_CELL_SIGNALING_IN_HELICOBACTER_PYLORI_INFECTION   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

Table: GSEA details [plain text format]

	PROBE	DESCRIPTION (from dataset)	GENE SYMBOL	GENE_TITLE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	ATP6V0B	Atp6v0b			516	2.828	0.0007	Yes
2	ATP6V1A	Atp6v1a			679	2.574	0.0213	Yes
3	IKBKG	Ikbkg			706	2.530	0.0501	Yes
4	PLCG2	Plcg2			735	2.492	0.0783	Yes
5	F11R	F11r			750	2.476	0.1073	Yes
6	ATP6V0D1	Atp6v0d1			781	2.439	0.1347	Yes
7	GIT1	Git1			917	2.296	0.1537	Yes
8	ATP6V1D	Atp6v1d			948	2.260	0.1790	Yes
9	ATP6V1B2	Atp6v1b2			1065	2.129	0.1971	Yes
10	ATP6V1C1	Atp6v1c1			1132	2.064	0.2177	Yes
11	ATP6V1F	Atp6v1f			1147	2.051	0.2416	Yes
12	JAM3	Jam3			1183	2.008	0.2635	Yes
13	LYN	Lyn			1345	1.850	0.2754	Yes
14	ATP6AP1	Atp6ap1			1377	1.821	0.2954	Yes
15	TCIRG1	Tcirg1			1479	1.737	0.3098	Yes
16	ATP6V1G1	Atp6v1g1			1533	1.696	0.3268	Yes
17	CXCR2	Cxcr2			1558	1.675	0.3454	Yes
18	MAPK12	Mapk12			1560	1.674	0.3655	Yes
19	PLCG1	Plcg1			1648	1.613	0.3794	Yes
20	ATP6V0C	Atp6v0c			1653	1.608	0.3985	Yes
21	ATP6V1H	Atp6v1h			1675	1.596	0.4164	Yes
22	ATP6V1E1	Atp6v1e1			1829	1.504	0.4246	Yes
23	ATP6V0E1	Atp6v0e			2994	0.981	0.3612	No
24	ATP6V0E2	Atp6v0e2			3180	0.924	0.3603	No
25	IKBKB	Ikbkb			3470	0.850	0.3519	No
26	MAPK11	Mapk11			4400	0.621	0.2993	No
27	MAPK8	Mapk8			4803	0.518	0.2796	No
28	MAPK10	Mapk10			5168	0.449	0.2614	No
29	CHUK	Chuk			5683	0.379	0.2328	No
30	ATP6V0A2	Atp6v0a2			6233	0.291	0.2008	No
31	RELA	Rela			6511	0.233	0.1857	No
32	CSK	Csk			6540	0.226	0.1866	No
33	ADAM10	Adam10			6851	0.165	0.1685	No
34	NFKBIA	Nfkbia			6940	0.148	0.1646	No
35	ATP6V1G2	Atp6v1g2			7538	0.039	0.1265	No
36	MAP2K4	Map2k4			8722	-0.131	0.0516	No
37	SRC	Src			8880	-0.156	0.0433	No
38	ATP6V0A1	Atp6v0a1			8992	-0.175	0.0382	No
39	MAPK9	Mapk9			10579	-0.451	-0.0589	No
40	ADAM17	Adam17			10614	-0.459	-0.0555	No
41	NOD1	Nod1			11034	-0.540	-0.0761	No
42	CDC42	Cdc42			11074	-0.550	-0.0720	No
43	MAPK14	Mapk14			11756	-0.714	-0.1074	No
44	TJP1	Tjp1			11958	-0.773	-0.1111	No
45	ATP6V1C2	Atp6v1c2			12423	-0.908	-0.1302	No
46	RAC1	Rac1			12614	-0.976	-0.1307	No
47	PTPN11	Ptpn11			12664	-0.992	-0.1219	No
48	MAPK13	Mapk13			12835	-1.057	-0.1202	No
49	ATP6V1B1	Atp6v1b1			12852	-1.064	-0.1084	No
50	CASP3	Casp3			12911	-1.085	-0.0990	No
51	PAK1	Pak1			13152	-1.182	-0.1003	No
52	ATP6V0A4	Atp6v0a4			13323	-1.264	-0.0961	No
53	HBEGF	Hbegf			13569	-1.400	-0.0950	No
54	MET	Met			13710	-1.474	-0.0863	No
55	JAM2	Jam2			14045	-1.723	-0.0871	No
56	NFKB1	Nfkb1			14275	-1.949	-0.0785	No
57	EGFR	Egfr			14536	-2.270	-0.0679	No
58	MAP3K14	Map3k14			14636	-2.430	-0.0450	No
59	JUN	Jun			14704	-2.538	-0.0187	No
60	CCL5	Ccl5			14720	-2.558	0.0111	No
61	ATP6V0D2	Atp6v0d2			15082	-3.390	0.0286	No

Fig 2: KEGG_EPITHELIAL_CELL_SIGNALING_IN_HELICOBACTER_PYLORI_INFECTION   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet

Fig 3: KEGG_EPITHELIAL_CELL_SIGNALING_IN_HELICOBACTER_PYLORI_INFECTION: Random ES distribution   
Gene set null distribution of ES for KEGG_EPITHELIAL_CELL_SIGNALING_IN_HELICOBACTER_PYLORI_INFECTION