Details for gene set KEGG_THYROID_CANCER[GSEA]

Table: GSEA Results Summary

Dataset	preliminary.phenotype.cls#NGP_versus_HG.phenotype.cls#NGP_versus_HG_repos
Phenotype	phenotype.cls#NGP_versus_HG_repos
Upregulated in class	NGP
GeneSet	KEGG_THYROID_CANCER
Enrichment Score (ES)	0.33936712
Normalized Enrichment Score (NES)	1.45963
Nominal p-value	0.10236221
FDR q-value	0.2991447
FWER p-Value	0.76

Fig 1: Enrichment plot: KEGG_THYROID_CANCER   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

Table: GSEA details [plain text format]

	PROBE	DESCRIPTION (from dataset)	GENE SYMBOL	GENE_TITLE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	LEF1	Lef1			52	4.231	0.1510	Yes
2	RET	Ret			205	3.549	0.2707	Yes
3	TCF7L1	Tcf7l1			1686	1.589	0.2332	Yes
4	NRAS	Nras			1999	1.405	0.2643	Yes
5	PPARG	Pparg			2225	1.299	0.2972	Yes
6	CTNNB1	Ctnnb1			2291	1.271	0.3394	Yes
7	PAX8	Pax8			3573	0.820	0.2866	No
8	MAPK3	Mapk3			4012	0.720	0.2846	No
9	RXRG	Rxrg			4499	0.590	0.2748	No
10	BRAF	Braf			5445	0.408	0.2287	No
11	RXRA	Rxra			7256	0.089	0.1152	No
12	RXRB	Rxrb			8223	-0.042	0.0544	No
13	TCF7L2	Tcf7l2			9232	-0.220	-0.0026	No
14	HRAS	Hras			9287	-0.231	0.0023	No
15	MAP2K1	Map2k1			9298	-0.232	0.0101	No
16	NCOA4	Ncoa4			9517	-0.272	0.0060	No
17	TPR	Tpr			9926	-0.355	-0.0074	No
18	CCDC6	Ccdc6			10003	-0.369	0.0011	No
19	NTRK1	Ntrk1			10125	-0.394	0.0077	No
20	MAPK1	Mapk1			10768	-0.489	-0.0159	No
21	TP53	Trp53			10894	-0.512	-0.0053	No
22	KRAS	Kras			11151	-0.567	-0.0011	No
23	TCF7	Tcf7			11581	-0.668	-0.0044	No
24	TPM3	Tpm3			12315	-0.871	-0.0199	No
25	TFG	Tfg			12774	-1.034	-0.0117	No
26	MYC	Myc			13033	-1.135	0.0130	No
27	CDH1	Cdh1			13373	-1.294	0.0384	No
28	CCND1	Ccnd1			14834	-2.752	0.0446	No

Fig 2: KEGG_THYROID_CANCER   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet

Fig 3: KEGG_THYROID_CANCER: Random ES distribution   
Gene set null distribution of ES for KEGG_THYROID_CANCER