Details for gene set KEGG_VEGF_SIGNALING_PATHWAY[GSEA]

Table: GSEA Results Summary

Dataset	preliminary.phenotype.cls#NGP_versus_HG.phenotype.cls#NGP_versus_HG_repos
Phenotype	phenotype.cls#NGP_versus_HG_repos
Upregulated in class	NGP
GeneSet	KEGG_VEGF_SIGNALING_PATHWAY
Enrichment Score (ES)	0.31334507
Normalized Enrichment Score (NES)	1.3852144
Nominal p-value	0.0
FDR q-value	0.27192703
FWER p-Value	0.856

Fig 1: Enrichment plot: KEGG_VEGF_SIGNALING_PATHWAY   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

Table: GSEA details [plain text format]

	PROBE	DESCRIPTION (from dataset)	GENE SYMBOL	GENE_TITLE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	KDR	Kdr			6	4.826	0.0694	Yes
2	PLA2G2E	Pla2g2e			162	3.725	0.1133	Yes
3	HSPB1	Hspb1			492	2.867	0.1335	Yes
4	PLCG2	Plcg2			735	2.492	0.1539	Yes
5	SPHK1	Sphk1			744	2.485	0.1894	Yes
6	CASP9	Casp9			1077	2.120	0.1986	Yes
7	PLA2G4A	Pla2g4a			1440	1.760	0.2006	Yes
8	MAPK12	Mapk12			1560	1.674	0.2171	Yes
9	PLA2G3	Pla2g3			1586	1.650	0.2394	Yes
10	PLCG1	Plcg1			1648	1.613	0.2588	Yes
11	PIK3CD	Pik3cd			1661	1.603	0.2812	Yes
12	MAPKAPK3	Mapkapk3			1729	1.562	0.2995	Yes
13	NRAS	Nras			1999	1.405	0.3024	Yes
14	PRKCG	Prkcg			2224	1.299	0.3067	Yes
15	NFAT5	Nfat5			2597	1.137	0.2991	Yes
16	PLA2G12A	Pla2g12a			2787	1.061	0.3023	Yes
17	MAPKAPK2	Mapkapk2			2848	1.035	0.3133	Yes
18	PLA2G5	Pla2g5			3454	0.853	0.2866	No
19	PIK3CG	Pik3cg			3524	0.831	0.2941	No
20	VEGFA	Vegfa			3726	0.782	0.2924	No
21	MAPK3	Mapk3			4012	0.720	0.2844	No
22	PTGS2	Ptgs2			4218	0.666	0.2808	No
23	MAPK11	Mapk11			4400	0.621	0.2781	No
24	SPHK2	Sphk2			4515	0.587	0.2792	No
25	PLA2G10	Pla2g10			4868	0.503	0.2637	No
26	CHP1	Chp1			5147	0.454	0.2523	No
27	PPP3R2	Ppp3r2			5524	0.401	0.2338	No
28	PLA2G6	Pla2g6			6232	0.291	0.1923	No
29	AKT2	Akt2			6853	0.164	0.1546	No
30	AKT1	Akt1			7042	0.129	0.1443	No
31	PXN	Pxn			7416	0.059	0.1210	No
32	PLA2G1B	Pla2g1b			7489	0.048	0.1170	No
33	PIK3CA	Pik3ca			7585	0.030	0.1113	No
34	NFATC1	Nfatc1			7704	0.008	0.1038	No
35	PLA2G12B	Pla2g12b			7820	0.000	0.0964	No
36	SH2D2A	Sh2d2a			8176	-0.033	0.0739	No
37	CHP2	Chp2			8436	-0.082	0.0583	No
38	BAD	Bad			8802	-0.146	0.0368	No
39	NFATC3	Nfatc3			8813	-0.148	0.0383	No
40	SRC	Src			8880	-0.156	0.0363	No
41	PIK3R5	Pik3r5			8900	-0.160	0.0374	No
42	RAC3	Rac3			9015	-0.180	0.0326	No
43	RAC2	Rac2			9271	-0.227	0.0194	No
44	HRAS	Hras			9287	-0.231	0.0218	No
45	MAP2K1	Map2k1			9298	-0.232	0.0245	No
46	NFATC4	Nfatc4			10107	-0.391	-0.0221	No
47	PPP3CA	Ppp3ca			10109	-0.391	-0.0165	No
48	PPP3CB	Ppp3cb			10538	-0.443	-0.0378	No
49	PLA2G2D	Pla2g2d			10756	-0.489	-0.0448	No
50	MAPK1	Mapk1			10768	-0.489	-0.0384	No
51	PLA2G4E	Pla2g4e			11004	-0.534	-0.0459	No
52	CDC42	Cdc42			11074	-0.550	-0.0424	No
53	KRAS	Kras			11151	-0.567	-0.0391	No
54	PTK2	Ptk2			11527	-0.655	-0.0539	No
55	RAF1	Raf1			11555	-0.662	-0.0460	No
56	MAPK14	Mapk14			11756	-0.714	-0.0486	No
57	AKT3	Akt3			11977	-0.777	-0.0516	No
58	RAC1	Rac1			12614	-0.976	-0.0787	No
59	MAPK13	Mapk13			12835	-1.057	-0.0776	No
60	PPP3CC	Ppp3cc			13434	-1.328	-0.0971	No
61	PIK3CB	Pik3cb			13719	-1.479	-0.0940	No
62	PIK3R1	Pik3r1			13721	-1.480	-0.0727	No
63	PRKCA	Prkca			13942	-1.648	-0.0631	No
64	NOS3	Nos3			14961	-3.019	-0.0852	No
65	NFATC2	Nfatc2			15146	-3.562	-0.0456	No
66	PRKCB	Prkcb			15515	-4.838	0.0006	No

Fig 2: KEGG_VEGF_SIGNALING_PATHWAY   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet

Fig 3: KEGG_VEGF_SIGNALING_PATHWAY: Random ES distribution   
Gene set null distribution of ES for KEGG_VEGF_SIGNALING_PATHWAY