Details for gene set KEGG

Table: GSEA Results Summary

Dataset	preliminary.phenotype.cls#NGP_versus_LG.phenotype.cls#NGP_versus_LG_repos
Phenotype	phenotype.cls#NGP_versus_LG_repos
Upregulated in class	NGP
GeneSet	KEGG_LYSOSOME
Enrichment Score (ES)	0.3328711
Normalized Enrichment Score (NES)	1.4377623
Nominal p-value	0.018867925
FDR q-value	0.3729831
FWER p-Value	0.917

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	MCOLN1	Mcoln1	256	2.433	0.0129	Yes
2	GLA	Gla	536	1.948	0.0185	Yes
3	IDUA	Idua	735	1.713	0.0264	Yes
4	CTSK	Ctsk	845	1.617	0.0389	Yes
5	CTSA	Ctsa	881	1.582	0.0559	Yes
6	IGF2R	Igf2r	900	1.570	0.0738	Yes
7	GNPTG	Gnptg	906	1.564	0.0924	Yes
8	ATP6V0B	Atp6v0b	942	1.535	0.1088	Yes
9	TPP1	Tpp1	965	1.521	0.1258	Yes
10	SLC17A5	Slc17a5	1002	1.498	0.1416	Yes
11	GBA	Gba	1064	1.452	0.1553	Yes
12	LAPTM5	Laptm5	1130	1.406	0.1682	Yes
13	LAMP1	Lamp1	1240	1.341	0.1774	Yes
14	NPC1	Npc1	1263	1.331	0.1921	Yes
15	NEU1	Neu1	1379	1.272	0.2001	Yes
16	SORT1	Sort1	1415	1.252	0.2130	Yes
17	SLC11A1	Slc11a1	1474	1.225	0.2241	Yes
18	LAMP2	Lamp2	1640	1.159	0.2274	Yes
19	ATP6V0D1	Atp6v0d1	1869	1.069	0.2256	Yes
20	CTNS	Ctns	1900	1.055	0.2365	Yes
21	HYAL1	Hyal1	2149	0.969	0.2321	Yes
22	GGA2	Gga2	2166	0.961	0.2428	Yes
23	ARSA	Arsa	2288	0.919	0.2461	Yes
24	ATP6V0C	Atp6v0c	2308	0.915	0.2559	Yes
25	LAPTM4B	Laptm4b	2364	0.900	0.2633	Yes
26	CLTC	Cltc	2422	0.886	0.2703	Yes
27	MFSD8	Mfsd8	2440	0.881	0.2799	Yes
28	AP3B1	Ap3b1	2618	0.839	0.2786	Yes
29	TCIRG1	Tcirg1	2760	0.808	0.2793	Yes
30	AP3D1	Ap3d1	2781	0.801	0.2877	Yes
31	MAN2B1	Man2b1	2868	0.780	0.2916	Yes
32	AP4B1	Ap4b1	2989	0.754	0.2930	Yes
33	GNS	Gns	3162	0.722	0.2906	Yes
34	GGA3	Gga3	3179	0.716	0.2982	Yes
35	ATP6V1H	Atp6v1h	3290	0.693	0.2995	Yes
36	DNASE2	Dnase2a	3380	0.674	0.3019	Yes
37	PPT1	Ppt1	3397	0.670	0.3090	Yes
38	GGA1	Gga1	3535	0.640	0.3078	Yes
39	CTSB	Ctsb	3584	0.630	0.3124	Yes
40	AP4M1	Ap4m1	3587	0.629	0.3199	Yes
41	SUMF1	Sumf1	3605	0.625	0.3264	Yes
42	ABCB9	Abcb9	3704	0.603	0.3273	Yes
43	ATP6AP1	Atp6ap1	3827	0.572	0.3263	Yes
44	CD63	Cd63	3834	0.570	0.3329	Yes
45	NPC2	Npc2	4005	0.540	0.3284	No
46	LAPTM4A	Laptm4a	4141	0.514	0.3259	No
47	AP1S2	Ap1s2	4186	0.506	0.3292	No
48	HGSNAT	Hgsnat	4440	0.470	0.3184	No
49	GAA	Gaa	4468	0.465	0.3223	No
50	HEXB	Hexb	4819	0.419	0.3047	No
51	PSAP	Psap	4835	0.416	0.3088	No
52	CTSS	Ctss	4957	0.401	0.3058	No
53	CTSF	Ctsf	5029	0.399	0.3060	No
54	NAPSA	Napsa	5065	0.393	0.3085	No
55	AP1M1	Ap1m1	5183	0.372	0.3055	No
56	ASAH1	Asah1	5242	0.364	0.3061	No
57	PSAPL1	Psapl1	5315	0.356	0.3058	No
58	AP4E1	Ap4e1	5409	0.356	0.3040	No
59	CD164	Cd164	5424	0.354	0.3074	No
60	ARSG	Arsg	5570	0.331	0.3020	No
61	CLTA	Clta	5622	0.319	0.3026	No
62	ABCA2	Abca2	6042	0.251	0.2785	No
63	NAGPA	Nagpa	6105	0.242	0.2774	No
64	AGA	Aga	6153	0.235	0.2772	No
65	GLB1	Glb1	6173	0.231	0.2788	No
66	LGMN	Lgmn	6280	0.211	0.2744	No
67	DNASE2B	Dnase2b	6292	0.209	0.2763	No
68	M6PR	M6pr	6753	0.133	0.2480	No
69	SMPD1	Smpd1	6768	0.130	0.2487	No
70	AP3S1	Ap3s1	6862	0.114	0.2441	No
71	AP1G1	Ap1g1	6933	0.104	0.2408	No
72	GALC	Galc	7318	0.046	0.2164	No
73	FUCA1	Fuca1	7432	0.029	0.2094	No
74	LIPA	Lipa	7436	0.028	0.2096	No
75	MANBA	Manba	7894	-0.001	0.1800	No
76	SCARB2	Scarb2	8050	-0.028	0.1702	No
77	ACP2	Acp2	8161	-0.045	0.1636	No
78	NAGA	Naga	8590	-0.107	0.1372	No
79	CTSW	Ctsw	8676	-0.119	0.1331	No
80	ACP5	Acp5	8770	-0.137	0.1287	No
81	AP1B1	Ap1b1	8982	-0.166	0.1171	No
82	SGSH	Sgsh	9183	-0.191	0.1064	No
83	CTSZ	Ctsz	9254	-0.202	0.1043	No
84	ATP6V0A2	Atp6v0a2	9527	-0.247	0.0897	No
85	PPT2	Ppt2	9981	-0.320	0.0642	No
86	AP3S2	Ap3s2	10448	-0.404	0.0388	No
87	AP1M2	Ap1m2	10477	-0.407	0.0419	No
88	GNPTAB	Gnptab	10691	-0.425	0.0333	No
89	CTSE	Ctse	10700	-0.427	0.0379	No
90	ENTPD4	Entpd4b	10733	-0.432	0.0411	No
91	CTSG	Ctsg	10749	-0.432	0.0454	No
92	AP1S3	Ap1s3	10800	-0.435	0.0474	No
93	CTSO	Ctso	11179	-0.494	0.0289	No
94	AP3M2	Ap3m2	11290	-0.515	0.0280	No
95	PLA2G15	Pla2g15	11430	-0.541	0.0255	No
96	ATP6V0A1	Atp6v0a1	12211	-0.715	-0.0164	No
97	AP1S1	Ap1s1	12230	-0.719	-0.0088	No
98	GUSB	Gusb	12291	-0.736	-0.0038	No
99	ATP6V0D2	Atp6v0d2	12918	-0.895	-0.0335	No
100	AP3M1	Ap3m1	13091	-0.950	-0.0332	No
101	GALNS	Galns	13373	-1.065	-0.0385	No
102	NAGLU	Naglu	13516	-1.112	-0.0342	No
103	SLC11A2	Slc11a2	13595	-1.145	-0.0254	No
104	AP3B2	Ap3b2	13627	-1.157	-0.0133	No
105	AP4S1	Ap4s1	13854	-1.253	-0.0128	No
106	GM2A	Gm2a	13986	-1.327	-0.0052	No
107	CTSH	Ctsh	14045	-1.360	0.0076	No
108	CTSC	Ctsc	14294	-1.520	0.0099	No
109	ARSB	Arsb	14526	-1.735	0.0160	No
110	CLTB	Cltb	14569	-1.784	0.0349	No
111	ATP6V0A4	Atp6v0a4	14944	-2.227	0.0377	No