Details for gene set KEGG_PRIMARY_IMMUNODEFICIENCY[GSEA]

Table: GSEA Results Summary

Dataset	preliminary.phenotype.cls#NGP_versus_NG.phenotype.cls#NGP_versus_NG_repos
Phenotype	phenotype.cls#NGP_versus_NG_repos
Upregulated in class	NGP
GeneSet	KEGG_PRIMARY_IMMUNODEFICIENCY
Enrichment Score (ES)	0.4780749
Normalized Enrichment Score (NES)	1.3911628
Nominal p-value	0.09647495
FDR q-value	0.3868782
FWER p-Value	0.997

Fig 1: Enrichment plot: KEGG_PRIMARY_IMMUNODEFICIENCY   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

Table: GSEA details [plain text format]

	PROBE	DESCRIPTION (from dataset)	GENE SYMBOL	GENE_TITLE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	IL7R	Il7r			298	1.427	0.1145	Yes
2	LCK	Lck			381	1.278	0.2289	Yes
3	IKBKG	Ikbkg			580	1.056	0.3151	Yes
4	ICOS	Icos			1630	0.639	0.3073	Yes
5	TAP1	Tap1			1809	0.585	0.3506	Yes
6	ZAP70	Zap70			2127	0.516	0.3785	Yes
7	ADA	Ada			2224	0.500	0.4191	Yes
8	BLNK	Blnk			2572	0.449	0.4388	Yes
9	BTK	Btk			2987	0.401	0.4496	Yes
10	RAG2	Rag2			3462	0.356	0.4524	Yes
11	CD79A	Cd79a			3573	0.350	0.4781	Yes
12	TNFRSF13C	Tnfrsf13c			4723	0.215	0.4241	No
13	CD4	Cd4			4957	0.194	0.4273	No
14	JAK3	Jak3			5537	0.144	0.4034	No
15	CIITA	Ciita			7256	0.015	0.2939	No
16	RFXANK	Rfxank			7968	-0.007	0.2488	No
17	RAG1	Rag1			8225	-0.026	0.2346	No
18	AIRE	Aire			8292	-0.030	0.2332	No
19	PTPRC	Ptprc			8369	-0.036	0.2316	No
20	DCLRE1C	Dclre1c			9827	-0.141	0.1509	No
21	RFX5	Rfx5			11014	-0.234	0.0963	No
22	RFXAP	Rfxap			11822	-0.314	0.0736	No
23	CD19	Cd19			12096	-0.344	0.0882	No
24	AICDA	Aicda			12429	-0.383	0.1027	No
25	CD40	Cd40			12733	-0.421	0.1225	No
26	UNG	Ung			14005	-0.614	0.0981	No

Fig 2: KEGG_PRIMARY_IMMUNODEFICIENCY   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet

Fig 3: KEGG_PRIMARY_IMMUNODEFICIENCY: Random ES distribution   
Gene set null distribution of ES for KEGG_PRIMARY_IMMUNODEFICIENCY