Details for gene set REACTOME_COLLAGEN

Table: GSEA Results Summary

Dataset	Normalized.Phenotype.FSHD2.ARH.cls#FSHD2_versus_ARH
Phenotype	Phenotype.FSHD2.ARH.cls#FSHD2_versus_ARH
Upregulated in class	FSHD2
GeneSet	REACTOME_COLLAGEN_DEGRADATION
Enrichment Score (ES)	0.3694199
Normalized Enrichment Score (NES)	1.5033642
Nominal p-value	0.024205748
FDR q-value	0.2374084
FWER p-Value	1.0

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	COL26A1	ENSG00000160963.14	26	1.811	0.0738	Yes
2	TMPRSS6	ENSG00000187045.18	170	1.289	0.1232	Yes
3	COL14A1	ENSG00000187955.12	202	1.233	0.1731	Yes
4	COL11A2	ENSG00000204248.10	261	1.164	0.2195	Yes
5	COL9A3	ENSG00000092758.18	301	1.131	0.2650	Yes
6	CTSB	ENSG00000164733.21	706	0.938	0.2937	Yes
7	ELANE	ENSG00000197561.7	2173	0.686	0.2862	Yes
8	COL6A6	ENSG00000206384.10	2896	0.614	0.2938	Yes
9	COL25A1	ENSG00000188517.16	3211	0.590	0.3104	Yes
10	MMP10	ENSG00000166670.10	3778	0.552	0.3193	Yes
11	COL4A4	ENSG00000081052.12	5076	0.485	0.3077	Yes
12	MMP11	ENSG00000099953.10	5438	0.463	0.3179	Yes
13	PHYKPL	ENSG00000175309.15	5469	0.461	0.3361	Yes
14	MMP1	ENSG00000196611.5	5783	0.444	0.3467	Yes
15	COL2A1	ENSG00000139219.19	6306	0.417	0.3511	Yes
16	COL16A1	ENSG00000084636.18	6521	0.407	0.3627	Yes
17	CTSL	ENSG00000135047.15	6908	0.393	0.3694	Yes
18	COL23A1	ENSG00000050767.17	7594	0.367	0.3678	No
19	COL9A1	ENSG00000112280.16	8277	0.352	0.3657	No
20	PRSS2	ENSG00000275896.5	9771	0.319	0.3425	No
21	COL6A3	ENSG00000163359.15	12073	0.268	0.2975	No
22	MMP14	ENSG00000157227.13	12590	0.252	0.2953	No
23	COL13A1	ENSG00000197467.14	12717	0.247	0.3024	No
24	MMP2	ENSG00000087245.13	14001	0.206	0.2796	No
25	COL6A2	ENSG00000142173.15	14929	0.176	0.2643	No
26	COL4A3	ENSG00000169031.19	15183	0.168	0.2650	No
27	MMP19	ENSG00000123342.16	15373	0.162	0.2671	No
28	COL8A2	ENSG00000171812.13	16605	0.128	0.2424	No
29	COL7A1	ENSG00000114270.17	16820	0.122	0.2422	No
30	COL4A6	ENSG00000197565.15	17112	0.114	0.2398	No
31	COL6A1	ENSG00000142156.14	18165	0.087	0.2178	No
32	ADAM17	ENSG00000151694.14	18419	0.082	0.2150	No
33	MMP8	ENSG00000118113.12	18994	0.065	0.2037	No
34	COL5A3	ENSG00000080573.7	19257	0.058	0.1997	No
35	COL8A1	ENSG00000144810.16	21914	-0.012	0.1356	No
36	COL5A1	ENSG00000130635.15	22567	-0.028	0.1208	No
37	COL18A1	ENSG00000182871.16	22895	-0.036	0.1144	No
38	COL1A2	ENSG00000164692.17	23053	-0.041	0.1122	No
39	COL1A1	ENSG00000108821.13	23206	-0.045	0.1104	No
40	MMP15	ENSG00000102996.5	23626	-0.056	0.1025	No
41	MMP13	ENSG00000137745.12	23862	-0.062	0.0993	No
42	COL3A1	ENSG00000168542.14	24737	-0.084	0.0815	No
43	COL4A5	ENSG00000188153.13	24793	-0.085	0.0836	No
44	MMP9	ENSG00000100985.7	25181	-0.096	0.0781	No
45	CTSD	ENSG00000117984.14	25979	-0.120	0.0637	No
46	COL4A2	ENSG00000134871.19	26354	-0.131	0.0599	No
47	FURIN	ENSG00000140564.12	26542	-0.136	0.0610	No
48	COL15A1	ENSG00000204291.11	27409	-0.161	0.0465	No
49	COL11A1	ENSG00000060718.22	28377	-0.192	0.0309	No
50	ADAM10	ENSG00000137845.15	28870	-0.207	0.0274	No
51	COL12A1	ENSG00000111799.21	29059	-0.214	0.0316	No
52	MMP7	ENSG00000137673.9	29674	-0.233	0.0263	No
53	CTSK	ENSG00000143387.13	30865	-0.272	0.0085	No
54	COL19A1	ENSG00000082293.13	32153	-0.302	-0.0104	No
55	COL5A2	ENSG00000204262.14	32186	-0.304	0.0013	No
56	COL6A5	ENSG00000172752.14	32299	-0.309	0.0113	No
57	COL4A1	ENSG00000187498.16	36388	-0.420	-0.0709	No
58	COL9A2	ENSG00000049089.15	36608	-0.432	-0.0585	No
59	ADAM9	ENSG00000168615.12	37925	-0.522	-0.0691	No
60	COL17A1	ENSG00000065618.21	39690	-0.661	-0.0849	No
61	COL10A1	ENSG00000123500.10	40191	-0.750	-0.0662	No
62	MMP3	ENSG00000149968.12	40668	-0.906	-0.0406	No
63	MMP12	ENSG00000262406.3	41064	-1.280	0.0024	No