Details for gene set REACTOME_COLLAGEN

Table: GSEA Results Summary

Dataset	Normalized.Phenotype.FSHD2.FSHD2M.cls#FSHD2_versus_FSHD2M
Phenotype	Phenotype.FSHD2.FSHD2M.cls#FSHD2_versus_FSHD2M
Upregulated in class	FSHD2
GeneSet	REACTOME_COLLAGEN_DEGRADATION
Enrichment Score (ES)	0.4529119
Normalized Enrichment Score (NES)	1.7154838
Nominal p-value	0.0
FDR q-value	0.06491897
FWER p-Value	0.954

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	COL26A1	ENSG00000160963.14	88	3.782	0.0480	Yes
2	CTSB	ENSG00000164733.21	145	3.504	0.0931	Yes
3	CTSK	ENSG00000143387.13	210	3.273	0.1350	Yes
4	COL14A1	ENSG00000187955.12	257	3.107	0.1750	Yes
5	COL6A3	ENSG00000163359.15	371	2.812	0.2096	Yes
6	CTSL	ENSG00000135047.15	458	2.665	0.2429	Yes
7	TMPRSS6	ENSG00000187045.18	499	2.600	0.2764	Yes
8	COL16A1	ENSG00000084636.18	589	2.483	0.3072	Yes
9	ELANE	ENSG00000197561.7	623	2.444	0.3388	Yes
10	COL6A2	ENSG00000142173.15	816	2.246	0.3641	Yes
11	COL13A1	ENSG00000197467.14	1056	2.080	0.3861	Yes
12	COL6A1	ENSG00000142156.14	1639	1.786	0.3962	Yes
13	COL6A6	ENSG00000206384.10	2037	1.617	0.4084	Yes
14	MMP1	ENSG00000196611.5	2473	1.481	0.4179	Yes
15	MMP3	ENSG00000149968.12	2562	1.453	0.4351	Yes
16	MMP2	ENSG00000087245.13	2616	1.437	0.4529	Yes
17	MMP10	ENSG00000166670.10	4529	1.040	0.4223	No
18	MMP19	ENSG00000123342.16	5262	0.933	0.4176	No
19	COL1A2	ENSG00000164692.17	6324	0.804	0.4036	No
20	MMP8	ENSG00000118113.12	6665	0.771	0.4060	No
21	COL12A1	ENSG00000111799.21	6723	0.765	0.4148	No
22	COL8A1	ENSG00000144810.16	7170	0.722	0.4140	No
23	COL3A1	ENSG00000168542.14	7229	0.715	0.4221	No
24	PHYKPL	ENSG00000175309.15	8161	0.632	0.4088	No
25	MMP7	ENSG00000137673.9	8697	0.591	0.4042	No
26	MMP14	ENSG00000157227.13	9489	0.539	0.3930	No
27	COL9A2	ENSG00000049089.15	9709	0.523	0.3948	No
28	COL9A3	ENSG00000092758.18	11887	0.394	0.3495	No
29	COL18A1	ENSG00000182871.16	13315	0.339	0.3208	No
30	PRSS2	ENSG00000275896.5	13875	0.322	0.3121	No
31	COL23A1	ENSG00000050767.17	13999	0.317	0.3134	No
32	ADAM9	ENSG00000168615.12	15364	0.282	0.2855	No
33	COL15A1	ENSG00000204291.11	18002	0.146	0.2262	No
34	CTSD	ENSG00000117984.14	18089	0.141	0.2261	No
35	ADAM10	ENSG00000137845.15	18147	0.139	0.2266	No
36	MMP12	ENSG00000262406.3	18315	0.129	0.2244	No
37	COL4A5	ENSG00000188153.13	20097	0.043	0.1836	No
38	COL8A2	ENSG00000171812.13	20347	0.029	0.1782	No
39	MMP11	ENSG00000099953.10	20933	-0.001	0.1646	No
40	COL6A5	ENSG00000172752.14	22980	-0.111	0.1186	No
41	COL9A1	ENSG00000112280.16	23057	-0.115	0.1183	No
42	COL5A3	ENSG00000080573.7	27521	-0.299	0.0187	No
43	MMP9	ENSG00000100985.7	31139	-0.471	-0.0591	No
44	COL4A6	ENSG00000197565.15	31285	-0.477	-0.0562	No
45	COL11A2	ENSG00000204248.10	31819	-0.502	-0.0619	No
46	COL1A1	ENSG00000108821.13	32343	-0.536	-0.0669	No
47	COL10A1	ENSG00000123500.10	33676	-0.637	-0.0895	No
48	MMP20	ENSG00000137674.4	33705	-0.639	-0.0816	No
49	COL17A1	ENSG00000065618.21	33743	-0.641	-0.0740	No
50	COL4A3	ENSG00000169031.19	34183	-0.675	-0.0753	No
51	COL5A2	ENSG00000204262.14	36764	-0.936	-0.1228	No
52	COL5A1	ENSG00000130635.15	37069	-0.977	-0.1169	No
53	FURIN	ENSG00000140564.12	37563	-1.044	-0.1146	No
54	COL4A4	ENSG00000081052.12	39066	-1.323	-0.1319	No
55	COL4A1	ENSG00000187498.16	39310	-1.380	-0.1193	No
56	COL7A1	ENSG00000114270.17	39421	-1.404	-0.1033	No
57	COL4A2	ENSG00000134871.19	39460	-1.413	-0.0854	No
58	ADAM17	ENSG00000151694.14	39944	-1.533	-0.0764	No
59	COL11A1	ENSG00000060718.22	40275	-1.618	-0.0626	No
60	COL2A1	ENSG00000139219.19	40754	-1.768	-0.0503	No
61	COL25A1	ENSG00000188517.16	40900	-1.824	-0.0295	No
62	MMP15	ENSG00000102996.5	41275	-1.992	-0.0118	No
63	MMP13	ENSG00000137745.12	41348	-2.033	0.0134	No
64	COL19A1	ENSG00000082293.13	41431	-2.090	0.0392	No