DatasetNormalized.Phenotype.FSHD2.FSHD2M.cls#FSHD2_versus_FSHD2M
PhenotypePhenotype.FSHD2.FSHD2M.cls#FSHD2_versus_FSHD2M
Upregulated in classFSHD2M
GeneSetREACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA
Enrichment Score (ES)-0.4706389
Normalized Enrichment Score (NES)-1.9422591
Nominal p-value0.0
FDR q-value0.0026029102
FWER p-Value0.113
Table: GSEA Results Summary



Fig 1: Enrichment plot: REACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEDESCRIPTION
(from dataset)
GENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1THOC6ENSG00000131652.1429941.334-0.0616No
2PPIL6ENSG00000185250.1531591.298-0.0574No
3WTAPENSG00000146457.1633881.247-0.0550No
4LSM6ENSG00000164167.1238001.165-0.0574No
5FIP1L1ENSG00000145216.1639071.144-0.0528No
6SYF2ENSG00000117614.1040171.123-0.0484No
7PDCD7ENSG00000090470.1543651.066-0.0499No
8NUP50ENSG00000093000.1945501.036-0.0478No
9SRSF9ENSG00000111786.950400.962-0.0533No
10NUP54ENSG00000138750.1565660.781-0.0840No
11POLR2KENSG00000147669.1166810.769-0.0819No
12NUDT21ENSG00000167005.1469240.744-0.0830No
13SLBPENSG00000163950.1377250.670-0.0975No
14CWC25ENSG00000273559.579840.648-0.0995No
15CPSF1ENSG00000071894.1780580.642-0.0972No
16SRSF5ENSG00000100650.1681840.630-0.0962No
17SRSF11ENSG00000116754.1383340.617-0.0959No
18GCFC2ENSG00000005436.1489400.572-0.1065No
19PTBP1ENSG00000011304.20104360.482-0.1384No
20PHF5AENSG00000100410.8115420.411-0.1616No
21SF3A2ENSG00000104897.10115850.408-0.1601No
22PPWD1ENSG00000113593.12119200.392-0.1654No
23ISY1ENSG00000240682.9120330.387-0.1657No
24CWC22ENSG00000163510.14120360.386-0.1633No
25HNRNPUL1ENSG00000105323.17120400.386-0.1610No
26RBM5ENSG00000003756.17120980.382-0.1600No
27POLR2HENSG00000163882.9122050.377-0.1601No
28SNRPD2ENSG00000125743.10133410.337-0.1845No
29U2AF1L4ENSG00000161265.15133620.335-0.1829No
30HNRNPA0ENSG00000177733.7140860.312-0.1978No
31CDC40ENSG00000168438.15141240.310-0.1968No
32CLP1ENSG00000172409.6154410.279-0.2257No
33PPIL3ENSG00000240344.9155470.272-0.2265No
34SF3B1ENSG00000115524.16158390.258-0.2317No
35ZCRB1ENSG00000139168.8159640.252-0.2330No
36METTL14ENSG00000145388.15160750.245-0.2341No
37RNPC3ENSG00000185946.16160760.244-0.2326No
38POLR2LENSG00000177700.6164730.221-0.2405No
39POLR2EENSG00000099817.12167420.208-0.2454No
40SF3B2ENSG00000087365.16168360.205-0.2463No
41FUSENSG00000089280.18169140.201-0.2469No
42USP39ENSG00000168883.20171730.189-0.2517No
43DDX39BENSG00000198563.14171790.189-0.2507No
44HNRNPA1ENSG00000135486.17172830.184-0.2519No
45LSM7ENSG00000130332.15173860.179-0.2532No
46PQBP1ENSG00000102103.16174630.174-0.2539No
47SF3B5ENSG00000169976.7176030.169-0.2561No
48DNAJC8ENSG00000126698.11176960.163-0.2573No
49NXF1ENSG00000162231.14182920.131-0.2703No
50ZC3H11AENSG00000058673.16189900.099-0.2860No
51U2AF1ENSG00000160201.11193740.079-0.2944No
52PPIL4ENSG00000131013.4198030.056-0.3040No
53LSM8ENSG00000128534.8201940.038-0.3129No
54SNRPGENSG00000143977.14206060.017-0.3224No
55SLU7ENSG00000164609.10206380.015-0.3230No
56PCBP2ENSG00000197111.15207070.012-0.3245No
57POLDIP3ENSG00000100227.18207720.009-0.3260No
58ZRSR2ENSG00000169249.12208290.006-0.3272No
59SNRNP25ENSG00000161981.1020970-0.002-0.3305No
60CWC15ENSG00000150316.1221101-0.011-0.3335No
61LSM3ENSG00000170860.421309-0.022-0.3381No
62SEC13ENSG00000157020.1821577-0.036-0.3442No
63SF3B4ENSG00000143368.1021758-0.045-0.3481No
64SMNDC1ENSG00000119953.1321807-0.047-0.3489No
65XAB2ENSG00000076924.1221991-0.056-0.3528No
66SARNPENSG00000205323.922699-0.096-0.3687No
67SNRNP70ENSG00000104852.1522720-0.097-0.3686No
68U2AF2ENSG00000063244.1222812-0.103-0.3701No
69PCF11ENSG00000165494.1122932-0.110-0.3722No
70NXT1ENSG00000132661.422966-0.111-0.3722No
71LSM5ENSG00000106355.1023103-0.119-0.3747No
72SART1ENSG00000175467.1523172-0.123-0.3755No
73THOC2ENSG00000125676.2023274-0.128-0.3771No
74CASC3ENSG00000108349.1723317-0.131-0.3773No
75SRRM2ENSG00000167978.1723487-0.140-0.3803No
76CSTF1ENSG00000101138.1223498-0.140-0.3797No
77DDX42ENSG00000198231.1323506-0.141-0.3790No
78DHX15ENSG00000109606.1323647-0.149-0.3813No
79LUZP4ENSG00000102021.1123747-0.153-0.3827No
80POLR2JENSG00000005075.1523836-0.160-0.3838No
81PAPOLAENSG00000090060.1823929-0.167-0.3849No
82TXNL4AENSG00000141759.1523982-0.170-0.3850No
83SNRPA1ENSG00000131876.1724006-0.172-0.3845No
84SRSF4ENSG00000116350.1724060-0.175-0.3847No
85RBMXENSG00000147274.1424113-0.177-0.3848No
86BUD31ENSG00000106245.1124208-0.183-0.3859No
87SF3B6ENSG00000115128.724258-0.186-0.3858No
88RBM22ENSG00000086589.1224292-0.188-0.3855No
89THOC3ENSG00000051596.924330-0.190-0.3851No
90HNRNPH1ENSG00000169045.1724388-0.193-0.3853No
91LSM2ENSG00000204392.1124687-0.211-0.3909No
92NUP98ENSG00000110713.1724843-0.220-0.3932No
93DDX5ENSG00000108654.1525689-0.240-0.4114No
94SNU13ENSG00000100138.1525739-0.242-0.4111No
95POLR2CENSG00000102978.1325751-0.243-0.4098No
96U2SURPENSG00000163714.1825907-0.255-0.4119No
97HNRNPFENSG00000169813.1625914-0.255-0.4104No
98POLR2IENSG00000105258.926035-0.262-0.4116No
99AAASENSG00000094914.1426543-0.269-0.4218No
100POLR2FENSG00000100142.1527064-0.278-0.4322No
101SNW1ENSG00000100603.1327105-0.281-0.4314No
102PPIEENSG00000084072.1627114-0.281-0.4298No
103UPF3BENSG00000125351.1127177-0.286-0.4295No
104SNRNP40ENSG00000060688.1327226-0.290-0.4288No
105DDX39AENSG00000123136.1527337-0.297-0.4296No
106TPRENSG00000047410.1427549-0.301-0.4326No
107CSTF2TENSG00000177613.928040-0.313-0.4421No
108THOC5ENSG00000100296.1328110-0.318-0.4418No
109CD2BP2ENSG00000169217.928500-0.336-0.4488No
110PRCCENSG00000143294.1528535-0.338-0.4475No
111CPSF7ENSG00000149532.1528557-0.340-0.4458No
112PRPF38AENSG00000134748.1328654-0.341-0.4460No
113TFIP11ENSG00000100109.1728697-0.344-0.4448No
114SF1ENSG00000168066.2029077-0.352-0.4515No
115SRSF6ENSG00000124193.1629117-0.354-0.4502No
116PRPF19ENSG00000110107.929162-0.358-0.4490No
117SRSF10ENSG00000188529.1529186-0.359-0.4474No
118DDX23ENSG00000174243.1029563-0.379-0.4538No
119ELAVL1ENSG00000066044.1529579-0.379-0.4518No
120SNRPEENSG00000182004.1329725-0.388-0.4528No
121POM121CENSG00000272391.630109-0.414-0.4592No
122THOC1ENSG00000079134.1230444-0.435-0.4643No
123EIF4A3ENSG00000141543.1230630-0.445-0.4658No
124GTF2F1ENSG00000125651.1430762-0.451-0.4661No
125RAE1ENSG00000101146.1330841-0.456-0.4651No
126YBX1ENSG00000065978.1931021-0.461-0.4664No
127POM121ENSG00000196313.1131048-0.463-0.4642No
128CPSF2ENSG00000165934.1331085-0.466-0.4621No
129HNRNPUENSG00000153187.2031095-0.467-0.4595No
130MAGOHBENSG00000111196.1031148-0.471-0.4578No
131THOC7ENSG00000163634.1231358-0.483-0.4596No
132SF3A1ENSG00000099995.1931632-0.496-0.4629No
133NUP37ENSG00000075188.931852-0.505-0.4649No
134HNRNPKENSG00000165119.2131992-0.513-0.4650No
135PRPF6ENSG00000101161.832092-0.521-0.4641No
136GPKOWENSG00000068394.1132321-0.535-0.4661No
137PRPF31ENSG00000105618.1432516-0.544-0.4673Yes
138NUP133ENSG00000069248.1232517-0.544-0.4639Yes
139NUP205ENSG00000155561.1532543-0.546-0.4611Yes
140DHX38ENSG00000140829.1232545-0.546-0.4578Yes
141PCBP1ENSG00000169564.732549-0.547-0.4545Yes
142SF3A3ENSG00000183431.1232599-0.551-0.4522Yes
143RBM17ENSG00000134453.1632794-0.568-0.4532Yes
144PABPN1ENSG00000100836.1033110-0.591-0.4569Yes
145NUP85ENSG00000125450.1133137-0.593-0.4539Yes
146HNRNPA3ENSG00000170144.2033147-0.594-0.4504Yes
147HNRNPCENSG00000092199.1733215-0.599-0.4483Yes
148SRRTENSG00000087087.2033282-0.603-0.4461Yes
149SRRM1ENSG00000133226.1733355-0.610-0.4440Yes
150WDR33ENSG00000136709.1233590-0.628-0.4456Yes
151TRA2BENSG00000136527.1833612-0.630-0.4422Yes
152SYMPKENSG00000125755.1933623-0.631-0.4385Yes
153SEH1LENSG00000085415.1633694-0.638-0.4362Yes
154DHX16ENSG00000204560.1033810-0.646-0.4349Yes
155MAGOHENSG00000162385.1133855-0.650-0.4319Yes
156PLRG1ENSG00000171566.1234270-0.680-0.4374Yes
157CPSF4ENSG00000160917.1534399-0.692-0.4361Yes
158PRPF3ENSG00000117360.1334441-0.697-0.4327Yes
159NUP35ENSG00000163002.1334581-0.709-0.4316Yes
160CHERPENSG00000085872.1534742-0.720-0.4309Yes
161PPIHENSG00000171960.1134892-0.732-0.4298Yes
162NUP62ENSG00000213024.1135039-0.744-0.4286Yes
163SNRPD1ENSG00000167088.1135042-0.745-0.4241Yes
164EIF4EENSG00000151247.1235069-0.748-0.4201Yes
165WBP4ENSG00000120688.935298-0.768-0.4206Yes
166SNRNP35ENSG00000184209.1535368-0.775-0.4175Yes
167PRPF8ENSG00000174231.1735496-0.786-0.4156Yes
168SRSF7ENSG00000115875.1935583-0.796-0.4127Yes
169HNRNPDENSG00000138668.1935597-0.797-0.4080Yes
170NUP43ENSG00000120253.1435668-0.806-0.4047Yes
171SNRPBENSG00000125835.1835755-0.814-0.4017Yes
172SRSF3ENSG00000112081.1735803-0.818-0.3977Yes
173NUP214ENSG00000126883.1735916-0.833-0.3952Yes
174NUP160ENSG00000030066.1335953-0.838-0.3908Yes
175PRPF40AENSG00000196504.1636032-0.847-0.3874Yes
176NCBP2ENSG00000114503.1136040-0.848-0.3824Yes
177CPSF3ENSG00000119203.1436075-0.852-0.3779Yes
178AQRENSG00000021776.1136101-0.856-0.3732Yes
179GLE1ENSG00000119392.1436314-0.879-0.3727Yes
180NUP153ENSG00000124789.1136546-0.906-0.3725Yes
181SNRPAENSG00000077312.936547-0.906-0.3669Yes
182CTNNBL1ENSG00000132792.1936690-0.928-0.3645Yes
183SNRNP200ENSG00000144028.1536739-0.934-0.3598Yes
184NUP188ENSG00000095319.1436744-0.935-0.3542Yes
185DDX46ENSG00000145833.1636859-0.949-0.3510Yes
186SNRPFENSG00000139343.1036890-0.952-0.3458Yes
187BCAS2ENSG00000116752.637040-0.972-0.3432Yes
188SF3B3ENSG00000189091.1337299-1.007-0.3430Yes
189SRSF1ENSG00000136450.1337367-1.015-0.3383Yes
190CRNKL1ENSG00000101343.1437444-1.026-0.3338Yes
191HNRNPH2ENSG00000126945.937474-1.030-0.3281Yes
192WBP11ENSG00000084463.837482-1.031-0.3219Yes
193SRSF2ENSG00000161547.1637659-1.061-0.3194Yes
194NUP107ENSG00000111581.1037710-1.069-0.3140Yes
195PRPF4ENSG00000136875.1237726-1.072-0.3077Yes
196POLR2GENSG00000168002.1237749-1.077-0.3016Yes
197CCAR1ENSG00000060339.1437820-1.086-0.2965Yes
198SNRNP27ENSG00000124380.1137995-1.116-0.2937Yes
199HNRNPA2B1ENSG00000122566.2138081-1.132-0.2887Yes
200DHX9ENSG00000135829.1738358-1.180-0.2878Yes
201METTL3ENSG00000165819.1238364-1.181-0.2806Yes
202SNRPCENSG00000124562.1038393-1.186-0.2740Yes
203SNRPD3ENSG00000100028.1238472-1.201-0.2684Yes
204RNPS1ENSG00000205937.1238619-1.227-0.2642Yes
205SNRNP48ENSG00000168566.1338749-1.254-0.2595Yes
206MTREXENSG00000039123.1638916-1.292-0.2554Yes
207CDC5LENSG00000096401.838949-1.298-0.2481Yes
208HNRNPLENSG00000104824.1739079-1.326-0.2429Yes
209POLR2BENSG00000047315.1639275-1.369-0.2390Yes
210HNRNPRENSG00000125944.2039305-1.378-0.2312Yes
211SNRPB2ENSG00000125870.1139337-1.385-0.2233Yes
212PUF60ENSG00000179950.1439384-1.396-0.2158Yes
213HNRNPMENSG00000099783.1239434-1.407-0.2082Yes
214ZMAT5ENSG00000100319.1339529-1.427-0.2016Yes
215CWC27ENSG00000153015.1639530-1.427-0.1928Yes
216NUP88ENSG00000108559.1239539-1.429-0.1842Yes
217NDC1ENSG00000058804.1239702-1.467-0.1789Yes
218RANBP2ENSG00000153201.1639878-1.517-0.1736Yes
219GTF2F2ENSG00000188342.1240005-1.549-0.1670Yes
220POLR2AENSG00000181222.1640044-1.559-0.1582Yes
221NUP210ENSG00000132182.1240138-1.584-0.1506Yes
222CSTF3ENSG00000176102.1340367-1.645-0.1458Yes
223POLR2DENSG00000144231.1140398-1.657-0.1362Yes
224HSPA8ENSG00000109971.1440417-1.661-0.1264Yes
225PPIL1ENSG00000137168.840449-1.672-0.1168Yes
226RBM8AENSG00000265241.640459-1.674-0.1067Yes
227NUP155ENSG00000113569.1640500-1.687-0.0972Yes
228FYTTD1ENSG00000122068.1340563-1.706-0.0881Yes
229SNRPNENSG00000128739.2240566-1.706-0.0776Yes
230CHTOPENSG00000160679.1340595-1.716-0.0677Yes
231CSTF2ENSG00000101811.1340885-1.816-0.0632Yes
232LSM4ENSG00000130520.1040907-1.826-0.0524Yes
233EFTUD2ENSG00000108883.1341110-1.912-0.0453Yes
234NCBP1ENSG00000136937.1341449-2.100-0.0402Yes
235NUP58ENSG00000139496.1641803-2.330-0.0340Yes
236ALYREFENSG00000183684.841977-2.473-0.0228Yes
237NUP93ENSG00000102900.1342500-3.124-0.0157Yes
238ELAVL2ENSG00000107105.1543043-4.8750.0018Yes
Table: GSEA details [plain text format]



Fig 2: REACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: REACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA: Random ES distribution   
Gene set null distribution of ES for REACTOME_PROCESSING_OF_CAPPED_INTRON_CONTAINING_PRE_MRNA