track gencode.vM12_Adam19TdTomato bigDataUrl gencode.vM18_Adam19TdT.bb shortLabel Gencode vM12 with Adam19-TdTomato on chrAdam19TdT longLabel Gencode vM12 with Adam19-TdTomato on chrAdam19TdT type bigGenePred group genes color 39,64,139 #################################### ## track set track Adam19_coverage superTrack on show shortLabel Adam19 RNA-seq coverage longLabel Adam19 RNA-seq coverage priority 1000 group coverage # ################################## # # Overlay multiple stranded tracks track KO_heart_stranded superTrack Adam19_coverage full container multiWig aggregate transparentOverlay shortLabel KO_heart longLabel KO_heart showSubtrackColorOnUi on type bigWig priority 1002 alwaysZero off graphTypeDefault bar maxHeightPixels 400:200:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale off viewLimits -2200:400 visibility full color 255,135,16 # ################################## track ATR236.4_Mut_heart_pos parent KO_heart_stranded bigDataUrl ATR236.4_Mut_heart-NS50811.L001.STAR_mm10.pos.bw type bigWig color 255,135,16 priority 1002 # ################################## track ATR236.4_Mut_heart_neg parent KO_heart_stranded bigDataUrl ATR236.4_Mut_heart-NS50811.L001.STAR_mm10.neg.bw type bigWig color 255,135,16 priority 1002 # ################################## track ATR237.2_Mut_heart_pos parent KO_heart_stranded bigDataUrl ATR237.2_Mut_heart-NS50811.L001.STAR_mm10.pos.bw type bigWig color 255,135,16 priority 1002 # ################################## track ATR237.2_Mut_heart_neg parent KO_heart_stranded bigDataUrl ATR237.2_Mut_heart-NS50811.L001.STAR_mm10.neg.bw type bigWig color 255,135,16 priority 1002 # ################################## track ATR237.3_Mut_heart_pos parent KO_heart_stranded bigDataUrl ATR237.3_Mut_heart-NS50811.L001.STAR_mm10.pos.bw type bigWig color 255,135,16 priority 1002 # ################################## track ATR237.3_Mut_heart_neg parent KO_heart_stranded bigDataUrl ATR237.3_Mut_heart-NS50811.L001.STAR_mm10.neg.bw type bigWig color 255,135,16 priority 1002 # ################################## # # Overlay multiple stranded tracks track KO_lung_stranded superTrack Adam19_coverage full container multiWig aggregate transparentOverlay shortLabel KO_lung longLabel KO_lung showSubtrackColorOnUi on type bigWig priority 1004 alwaysZero off graphTypeDefault bar maxHeightPixels 400:100:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale off viewLimits -1100:400 visibility full color 90,49,158 # ################################## track ATR236.4_Mut_lung_pos parent KO_lung_stranded bigDataUrl ATR236.4_Mut_lung-NS50811.L001.STAR_mm10.pos.bw type bigWig color 90,49,158 priority 1004 # ################################## track ATR236.4_Mut_lung_neg parent KO_lung_stranded bigDataUrl ATR236.4_Mut_lung-NS50811.L001.STAR_mm10.neg.bw type bigWig color 90,49,158 priority 1004 # ################################## track ATR237.2_Mut_lung_pos parent KO_lung_stranded bigDataUrl ATR237.2_Mut_lung-NS50811.L001.STAR_mm10.pos.bw type bigWig color 90,49,158 priority 1004 # ################################## track ATR237.2_Mut_lung_neg parent KO_lung_stranded bigDataUrl ATR237.2_Mut_lung-NS50811.L001.STAR_mm10.neg.bw type bigWig color 90,49,158 priority 1004 # ################################## track ATR237.3_Mut_lung_pos parent KO_lung_stranded bigDataUrl ATR237.3_Mut_lung-NS50811.L001.STAR_mm10.pos.bw type bigWig color 90,49,158 priority 1004 # ################################## track ATR237.3_Mut_lung_neg parent KO_lung_stranded bigDataUrl ATR237.3_Mut_lung-NS50811.L001.STAR_mm10.neg.bw type bigWig color 90,49,158 priority 1004 ## Beginning of track view track Adam19_junctions compositeTrack on shortLabel Adam19 junction Reads longLabel Adam19 junction Reads priority 2004 visibility full type bed 3 configurable on ## Views track for RNAseq, junctions data track Adam19junctionsView parent Adam19_junctions shortLabel RNAseq junction reads view JUNC visibility pack type bigBed 12 allButtonPair on centerLabelsDense on dragAndDrop on thickDrawItem on scoreFilter 20 scoreFilterLimits 1:1000 viewUi on # junctions track track KO_heart_junctions parent Adam19junctionsView on bigDataUrl Mut_heart.combinedJunctions.bb shortLabel KO_heart junctions longLabel KO_heart junctions type bigBed 12 visibility pack priority 1003 scoreMin 10 scoreMax 100 color 255,135,16 # junctions track track KO_lung_junctions parent Adam19junctionsView on bigDataUrl Mut_lung.combinedJunctions.bb shortLabel KO_lung junctions longLabel KO_lung junctions type bigBed 12 visibility pack priority 1005 scoreMin 10 scoreMax 100 color 90,49,158 ## Adam19 TdTomato construct features track Adam19_construct shortLabel Adam19 construct longLabel Adam19 construct priority 900 visibility pack type bigBed 12 itemRgb on configurable on bigDataUrl adam19tdt_features_02mar2021.bb