track gencode.vM33_Adam19TdTomato bigDataUrl gencode.vM33_Adam19TdT.bb shortLabel Gencode vM33 with Adam19-TdTomato on chrAdam19TdT longLabel Gencode vM33 with Adam19-TdTomato on chrAdam19TdT type bigGenePred labelFields name,name2 defaultLabelField name,name2 group genes color 39,64,139 searchIndex name,name2 visibility pack priority 500 #################################### ## track set track Adam19_coverage superTrack on show shortLabel Adam19 RNA-seq coverage longLabel Adam19 RNA-seq coverage priority 1000 group coverage # ################################## # # Overlay multiple stranded tracks track WT_lung_stranded superTrack Adam19_coverage full container multiWig aggregate transparentOverlay shortLabel WT_lung longLabel WT_lung showSubtrackColorOnUi on type bigWig priority 1012 alwaysZero off graphTypeDefault bar maxHeightPixels 400:150:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale off viewLimits -220:220 visibility full color 90,49,158 # ################################## track WT_lung_pos parent WT_lung_stranded bigDataUrl WT_lung.scaled.pos.bw type bigWig color 90,49,158 priority 1012 # ################################## track WT_lung_neg parent WT_lung_stranded bigDataUrl WT_lung.scaled.neg.bw type bigWig color 90,49,158 priority 1012 # ################################## # # Overlay multiple stranded tracks track KO_lung_stranded superTrack Adam19_coverage full container multiWig aggregate transparentOverlay shortLabel KO_lung longLabel KO_lung showSubtrackColorOnUi on type bigWig priority 1004 alwaysZero off graphTypeDefault bar maxHeightPixels 400:150:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale off viewLimits -220:220 visibility full color 90,49,158 # ################################## track KO_lung_pos parent KO_lung_stranded bigDataUrl Mut_lung.scaled.pos.bw type bigWig color 90,49,158 priority 1004 # ################################## track KO_lung_neg parent KO_lung_stranded bigDataUrl Mut_lung.scaled.neg.bw type bigWig color 90,49,158 priority 1004 # ################################## # # Overlay multiple stranded tracks track WT_heart_stranded superTrack Adam19_coverage full container multiWig aggregate transparentOverlay shortLabel WT_heart longLabel WT_heart showSubtrackColorOnUi on type bigWig priority 1010 alwaysZero off graphTypeDefault bar maxHeightPixels 400:150:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale off viewLimits -220:220 visibility full color 255,135,16 # ################################## track WT_heart_pos parent WT_heart_stranded bigDataUrl WT_heart.scaled.pos.bw type bigWig color 255,135,16 priority 1010 # ################################## track WT_heart_neg parent WT_heart_stranded bigDataUrl WT_heart.scaled.neg.bw type bigWig color 255,135,16 priority 1010 # ################################## # # Overlay multiple stranded tracks track KO_heart_stranded superTrack Adam19_coverage full container multiWig aggregate transparentOverlay shortLabel KO_heart longLabel KO_heart showSubtrackColorOnUi on type bigWig priority 1000 alwaysZero off graphTypeDefault bar maxHeightPixels 400:150:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale off viewLimits -220:220 visibility full color 255,135,16 # ################################## track KO_heart_pos parent KO_heart_stranded bigDataUrl Mut_heart.scaled.pos.bw type bigWig color 255,135,16 priority 1000 # ################################## track KO_heart_neg parent KO_heart_stranded bigDataUrl Mut_heart.scaled.neg.bw type bigWig color 255,135,16 priority 1000 ## Beginning of track view track Adam19_junctions compositeTrack on shortLabel Adam19 junction Reads longLabel Adam19 junction Reads priority 2004 visibility full type bed 3 configurable on group coverage ## Views track for RNAseq, junctions data track Adam19junctionsView parent Adam19_junctions shortLabel RNAseq junction reads view JUNC visibility pack type bigBed 12 allButtonPair on centerLabelsDense on dragAndDrop on thickDrawItem on scoreFilter 20 scoreFilterLimits 1:1000 viewUi on priority 2000 # junctions track track WT_lung_junctions parent Adam19junctionsView on bigDataUrl WT_lung.union_junctions.mm39.bb shortLabel WT_lung junctions longLabel WT_lung junctions type bigBed 12 visibility pack priority 2013 scoreMin 10 scoreMax 100 color 90,49,158 # junctions track track KO_lung_junctions parent Adam19junctionsView on bigDataUrl Mut_lung.union_junctions.mm39.bb shortLabel KO_lung junctions longLabel KO_lung junctions type bigBed 12 visibility pack priority 2005 scoreMin 10 scoreMax 100 color 90,49,158 # junctions track track WT_heart_junctions parent Adam19junctionsView on bigDataUrl WT_heart.union_junctions.mm39.bb shortLabel WT_heart junctions longLabel WT_heart junctions type bigBed 12 visibility pack priority 2009 scoreMin 10 scoreMax 100 color 255,135,16 # junctions track track KO_heart_junctions parent Adam19junctionsView on bigDataUrl Mut_heart.union_junctions.mm39.bb shortLabel KO_heart junctions longLabel KO_heart junctions type bigBed 12 visibility pack priority 2001 scoreMin 10 scoreMax 100 color 255,135,16 ## Adam19 TdTomato construct features track Adam19_construct shortLabel Adam19 construct longLabel Adam19 construct priority 600 visibility pack type bigBed 12 itemRgb on configurable on bigDataUrl adam19tdt_features_02mar2021.bb group genes