QC-Report

Allele-Frequency Correlation

Uploaded Samples vs. Reference Panel

The plot shows the densities of frequencies falling into each part. The first 5000 points from areas of lowest regional densities will be plotted.

Potential Frequency Mismatches

Markers where chisq is greater than 300.

## Total mismatches: 5185

## Mismatched frequencies for '10:1516141' f[A,G] = [0.001758312,0.9982417] vs [0.3165,0.6835], chisq 2663.587
## Mismatched frequencies for '10:1586258' f[A,C] = [0.3922634,0.6077366] vs [0.02289999,0.9771], chisq 9447.009
## Mismatched frequencies for '10:3001065' f[A,G] = [0.9213555,0.0786445] vs [0.003899991,0.9961], chisq 34233.23
## Mismatched frequencies for '10:5335965' f[C,T] = [0.9203965,0.07960358] vs [0.9723,0.0277], chisq 406.2639
## Mismatched frequencies for '10:5901410' f[T,C] = [0.5596228,0.4403772] vs [0.9975,0.0025], chisq 14817.74
## Mismatched frequencies for '10:7073141' f[T,G] = [0.9029732,0.09702685] vs [0.9947,0.0053], chisq 2238.773
## Mismatched frequencies for '10:7564341' f[A,G] = [0.6863811,0.3136189] vs [0.9633,0.0367], chisq 5377.26
## Mismatched frequencies for '10:7866269' f[A,G] = [0.8101023,0.1898977] vs [0.999,0.001], chisq 6132.147
## Mismatched frequencies for '10:10188783' f[A,G] = [0.6429028,0.3570972] vs [0.7639,0.2361], chisq 403.5597
## Mismatched frequencies for '10:10310841' f[G,T] = [0.2742967,0.7257033] vs [0.02880001,0.9712], chisq 4957.196
## Mismatched frequencies for '10:12587222' f[A,G] = [0.9245524,0.07544757] vs [0.974,0.026], chisq 390.6231
## Mismatched frequencies for '10:17050464' f[C,T] = [0.8559783,0.1440217] vs [0.9863,0.0137], chisq 2655.713
## Mismatched frequencies for '10:17806504' f[G,A] = [0.1871803,0.8128197] vs [0.4142,0.5858], chisq 1150.364
## Mismatched frequencies for '10:17863037' f[T,C] = [0.451087,0.5489131] vs [0.9501,0.0499], chisq 11510.2
## Mismatched frequencies for '10:17875857' f[T,G] = [0.3371164,0.6628836] vs [0.7994,0.2006], chisq 5618.868
## Mismatched frequencies for '10:17971845' f[A,G] = [0.3855499,0.6144502] vs [0.9119,0.0881], chisq 10151.2
## Mismatched frequencies for '10:18055831' f[G,T] = [0.4087276,0.5912724] vs [0.9994,6e-04], chisq 21083.76
## Mismatched frequencies for '10:18057708' f[G,A] = [0.1545716,0.8454284] vs [0.6547,0.3453], chisq 5365.293
## Mismatched frequencies for '10:18103401' f[T,C] = [0.3601343,0.6398658] vs [0.8146,0.1854], chisq 5647.558
## Mismatched frequencies for '10:18136543' f[G,A] = [0.860454,0.139546] vs [0.3958,0.6042], chisq 4545.41
## Mismatched frequencies for '10:18209384' f[T,C] = [0.08407928,0.9159207] vs [0.1773,0.8227], chisq 335.3684
## Mismatched frequencies for '10:18225092' f[C,A] = [0.6329923,0.3670077] vs [0.9538,0.0462], chisq 6105.69
## Mismatched frequencies for '10:25346357' f[C,A] = [0.7119565,0.2880435] vs [0.8894,0.1106], chisq 1377.795
## Mismatched frequencies for '10:29597090' f[G,A] = [0.01070972,0.9892903] vs [0.9789,0.0211], chisq 33678.37
## Mismatched frequencies for '10:32037322' f[A,C] = [0.7165921,0.2834079] vs [0.9975,0.0025], chisq 9079.55
## Mismatched frequencies for '10:36731029' f[C,A] = [0.7872443,0.2127557] vs [0.9921,0.0079], chisq 5599.336
## Mismatched frequencies for '10:37940456' f[G,T] = [0.9074488,0.09255115] vs [0.9979,0.0021], chisq 2611.54
## Mismatched frequencies for '10:54069066' f[C,T] = [0.603101,0.396899] vs [0.8737,0.1263], chisq 2721.907
## Mismatched frequencies for '10:54564363' f[A,C] = [0.7768542,0.2231458] vs [0.8992,0.1008], chisq 740.5107
## Mismatched frequencies for '10:54727984' f[G,A] = [0.8855498,0.1144501] vs [0.9867,0.0133], chisq 1865.923
## Mismatched frequencies for '10:57027736' f[T,A] = [0.8339195,0.1660806] vs [0.9077,0.0923], chisq 305.8525
## Mismatched frequencies for '10:63750802' f[C,T] = [0.920876,0.07912404] vs [0.9948,0.0052], chisq 1701.35
## Mismatched frequencies for '10:71072032' f[G,A] = [0.0001598465,0.9998401] vs [0.3764,0.6236], chisq 3437.516
## Mismatched frequencies for '10:73147307' f[T,C] = [0.5831202,0.4168798] vs [0.4298,0.5702], chisq 497.3199
## Mismatched frequencies for '10:75768974' f[T,C] = [0.7655051,0.2344949] vs [0.9974,0.0026], chisq 7334.796
## Mismatched frequencies for '10:80028407' f[C,A] = [0.526055,0.473945] vs [0.3248,0.6752], chisq 925.1709
## Mismatched frequencies for '10:81215872' f[A,C] = [0.8554987,0.1445013] vs [0.9944,0.0056], chisq 3713.47
## Mismatched frequencies for '10:85566445' f[C,G] = [0.8860294,0.1139706] vs [0.9996,4e-04], chisq 3677.903
## Mismatched frequencies for '10:107479598' f[T,G] = [0.8401535,0.1598465] vs [0.9861,0.0139], chisq 3097.337
## Mismatched frequencies for '10:107903446' f[A,C] = [0.943734,0.05626598] vs [0.9917,0.0083], chisq 764.241
## Mismatched frequencies for '10:109397035' f[A,C] = [0.3342391,0.6657609] vs [0.1895,0.8105], chisq 655.7976
## Mismatched frequencies for '10:122860694' f[C,T] = [0.9096867,0.0903133] vs [0.9986,0.0014], chisq 2672.743
## Mismatched frequencies for '10:123140476' f[T,G] = [0.5084718,0.4915281] vs [0.9868,0.0132], chisq 14584.77
## Mismatched frequencies for '10:125228663' f[C,A] = [0.9058504,0.09414962] vs [0.9986,0.0014], chisq 2800.106
## Mismatched frequencies for '10:125780759' f[G,C] = [0.7215473,0.2784527] vs [0.9995,5e-04], chisq 9350.252
## Mismatched frequencies for '10:126806772' f[A,G] = [0.9453325,0.05466752] vs [0.9916,0.0084], chisq 718.7598
## Mismatched frequencies for '10:126806779' f[A,G] = [0.9440537,0.05594629] vs [0.9914,0.0086], chisq 735.6104
## Mismatched frequencies for '10:130162295' f[A,G] = [0.8041879,0.195812] vs [0.9953,0.0047], chisq 5584.185
## Mismatched frequencies for '10:132320143' f[G,A] = [0.9063299,0.09367008] vs [0.9991,9e-04], chisq 2887.468
## Mismatched frequencies for '10:132947578' f[C,T] = [0.7078005,0.2921995] vs [0.9891,0.0109], chisq 7806.622
## Mismatched frequencies for '10:133080353' f[C,A] = [0.9998401,0.0001598465] vs [0.385,0.615], chisq 7939.404
## Mismatched frequencies for '10:134160326' f[G,A] = [0.7495205,0.2504795] vs [0.9589,0.0411], chisq 3317.761
## Mismatched frequencies for '10:134957013' f[T,C] = [0.76039,0.23961] vs [0.9847,0.0153], chisq 5399.336
## Mismatched frequencies for '10:135204609' f[T,C] = [0.9464514,0.05354859] vs [0.9882,0.0118], chisq 502.3186
## Mismatched frequencies for '11:193863' f[T,C] = [0.5393223,0.4606777] vs [0.3857,0.6143], chisq 511.5432
## Mismatched frequencies for '11:207698' f[C,T] = [0.4042519,0.5957481] vs [0.9327,0.0673], chisq 11323.45
## Mismatched frequencies for '11:941941' f[A,T] = [0.0009590793,0.9990409] vs [0.3673,0.6327], chisq 3302.152
## Mismatched frequencies for '11:1018138' f[T,C] = [0.9998401,0.0001598465] vs [0.8935,0.1065], chisq 729.2072
## Mismatched frequencies for '11:1267727' f[T,C] = [0.9707481,0.02925192] vs [0.9948,0.0052], chisq 337.0483
## Mismatched frequencies for '11:3295219' f[T,C] = [0.2936381,0.7063619] vs [0.4537,0.5463], chisq 548.9752
## Mismatched frequencies for '11:4615390' f[C,T] = [0.04923274,0.9507673] vs [0.01480001,0.9852], chisq 311.7623
## Mismatched frequencies for '11:5271063' f[C,T] = [0.6699169,0.3300831] vs [0.8284,0.1716], chisq 832.1939
## Mismatched frequencies for '11:8693405' f[G,A] = [0.3460678,0.6539322] vs [0.4762,0.5238], chisq 358.1873
## Mismatched frequencies for '11:10760227' f[T,C] = [0.5799233,0.4200767] vs [0.8229,0.1771], chisq 1826.519
## Mismatched frequencies for '11:13798377' f[T,A] = [0.9136829,0.08631714] vs [0.9982,0.0018], chisq 2462.676
## Mismatched frequencies for '11:21955796' f[G,A] = [0.5345268,0.4654732] vs [0.9875,0.0125], chisq 13739.27
## Mismatched frequencies for '11:41911005' f[T,C] = [0.3118606,0.6881394] vs [0.8056,0.1944], chisq 6425.778
## Mismatched frequencies for '11:42809664' f[C,T] = [0.8236893,0.1763107] vs [0.9174,0.0826], chisq 522.3445
## Mismatched frequencies for '11:55501163' f[G,T] = [0.9124041,0.08759591] vs [0.999,0.001], chisq 2664.115
## Mismatched frequencies for '11:56311050' f[C,T] = [0.8305626,0.1694373] vs [0.9084,0.0916], chisq 340.5402
## Mismatched frequencies for '11:56467945' f[G,T] = [0.480179,0.519821] vs [0.8823,0.1177], chisq 5681.229
## Mismatched frequencies for '11:56468368' f[C,T] = [0.08711637,0.9128836] vs [0.8395,0.1605], chisq 14663.59
## Mismatched frequencies for '11:56468440' f[G,T] = [0.5730498,0.4269501] vs [0.9999,1e-04], chisq 14866.36
## Mismatched frequencies for '11:59480952' f[G,A] = [0.8984975,0.1015026] vs [0.9849,0.0151], chisq 1387.943
## Mismatched frequencies for '11:60090790' f[T,C] = [0.0001598465,0.9998401] vs [0.6396,0.3604], chisq 8624.452
## Mismatched frequencies for '11:63523611' f[G,A] = [0.699968,0.300032] vs [0.9995,5e-04], chisq 10121.13
## Mismatched frequencies for '11:70732826' f[A,C] = [0.7583121,0.241688] vs [0.9762,0.0238], chisq 4485.489
## Mismatched frequencies for '11:80740802' f[T,G] = [0.348945,0.651055] vs [0.5632,0.4368], chisq 966.3186
## Mismatched frequencies for '11:83634051' f[A,G] = [0.4729859,0.5270141] vs [0.2784,0.7216], chisq 928.7873
## Mismatched frequencies for '11:96590979' f[A,G] = [0.9744245,0.02557545] vs [0.9977,0.0023], chisq 471.7773
## Mismatched frequencies for '11:102398434' f[C,T] = [0.7695013,0.2304987] vs [0.9998,2e-04], chisq 7726.827
## Mismatched frequencies for '11:105852319' f[A,C] = [0.9287084,0.07129156] vs [0.9809,0.0191], chisq 533.6723
## Mismatched frequencies for '11:106531136' f[A,G] = [0.9375,0.0625] vs [0.9837,0.0163], chisq 482.6106
## Mismatched frequencies for '11:112730169' f[A,C] = [0.5110294,0.4889706] vs [0.7923,0.2077], chisq 2194.964
## Mismatched frequencies for '11:120828334' f[G,A] = [0.3088235,0.6911765] vs [0.4674,0.5326], chisq 534.8623
## Mismatched frequencies for '11:124035183' f[C,T] = [0.8591752,0.1408248] vs [0.995,0.005], chisq 3691.207
## Mismatched frequencies for '11:124513197' f[G,A] = [0.9474105,0.05258951] vs [0.987,0.013], chisq 432.2569
## Mismatched frequencies for '11:132375142' f[G,A] = [0.7987532,0.2012468] vs [0.983,0.017], chisq 3994.501
## Mismatched frequencies for '12:752998' f[G,T] = [0.3267263,0.6732737] vs [0.5023,0.4977], chisq 648.54
## Mismatched frequencies for '12:2102824' f[A,G] = [0.8396739,0.1603261] vs [0.9983,0.0017], chisq 4965.846
## Mismatched frequencies for '12:5512162' f[T,G] = [0.9574809,0.04251918] vs [0.9914,0.0086], chisq 434.7489
## Mismatched frequencies for '12:6128749' f[C,T] = [0.0001598465,0.9998401] vs [0.9999,1e-04], chisq 38694.66
## Mismatched frequencies for '12:9273449' f[G,A] = [0.5660166,0.4339834] vs [0.7184,0.2816], chisq 573.3222
## Mismatched frequencies for '12:11243929' f[C,T] = [0.4721867,0.5278133] vs [0.9784,0.0216], chisq 14501.47
## Mismatched frequencies for '12:11244591' f[C,A] = [0.4852941,0.5147059] vs [0.9643,0.0357], chisq 12000.08
## Mismatched frequencies for '12:11867585' f[A,G] = [0.6005435,0.3994565] vs [0.7573,0.2427], chisq 656.9887
## Mismatched frequencies for '12:12205302' f[T,G] = [0.03069054,0.9693095] vs [0.1151,0.8849], chisq 409.9314
## Mismatched frequencies for '12:21815421' f[A,G] = [0.7436061,0.2563938] vs [0.9229,0.0771], chisq 1778.413
## Mismatched frequencies for '12:25995230' f[A,G] = [0.9998401,0.0001598465] vs [0.8179,0.1821], chisq 1341.954
## Mismatched frequencies for '12:28760600' f[T,G] = [0.6974105,0.3025895] vs [0.9214,0.0786], chisq 2590
## Mismatched frequencies for '12:40824739' f[G,A] = [0.9987212,0.001278772] vs [0.8057,0.1943], chisq 1431.593
## Mismatched frequencies for '12:46808058' f[G,A] = [0.9651535,0.03484655] vs [0.9983,0.0017], chisq 822.7183
## Mismatched frequencies for '12:47192323' f[A,G] = [0.9998401,0.0001598465] vs [0.01789999,0.9821], chisq 34792.41
## Mismatched frequencies for '12:50486322' f[T,C] = [0.5660166,0.4339834] vs [0.9456,0.0544], chisq 7385.721
## Mismatched frequencies for '12:53606565' f[T,C] = [0.9023337,0.09766624] vs [0.9582,0.0418], chisq 339.3534
## Mismatched frequencies for '12:58572626' f[T,C] = [0.7476023,0.2523977] vs [0.9881,0.0119], chisq 6297.547
## Mismatched frequencies for '12:60204956' f[A,G] = [0.9251918,0.07480819] vs [0.9999,1e-04], chisq 2435.477
## Mismatched frequencies for '12:67010865' f[T,G] = [0.6962916,0.3037084] vs [0.9732,0.0268], chisq 6055.842
## Mismatched frequencies for '12:68062709' f[C,A] = [0.9157609,0.08423913] vs [0.9865,0.0135], chisq 1079.889
## Mismatched frequencies for '12:68150362' f[T,G] = [0.6243606,0.3756394] vs [0.9717,0.0283], chisq 8188.131
## Mismatched frequencies for '12:69525487' f[G,A] = [0.91672,0.08328005] vs [0.9727,0.0273], chisq 469.3493
## Mismatched frequencies for '12:74960790' f[C,T] = [0.9024936,0.0975064] vs [0.9765,0.0235], chisq 840.0602
## Mismatched frequencies for '12:94511174' f[A,C] = [0.8407928,0.1592072] vs [0.9973,0.0027], chisq 4723.642
## Mismatched frequencies for '12:95216936' f[C,T] = [0.9998401,0.0001598465] vs [0.7709,0.2291], chisq 1771.365
## Mismatched frequencies for '12:104373710' f[A,G] = [0.9860933,0.01390665] vs [0.9994,6e-04], chisq 338.7163
## Mismatched frequencies for '12:106502283' f[A,G] = [0.5131074,0.4868926] vs [0.6592,0.3408], chisq 483.3595
## Mismatched frequencies for '12:107392471' f[A,C] = [0.9749041,0.02509591] vs [0.996,0.004], chisq 317.4712
## Mismatched frequencies for '12:108701152' f[G,T] = [0.85422,0.1457801] vs [0.9496,0.0504], chisq 776.2033
## Mismatched frequencies for '12:108942775' f[C,G] = [0.9144821,0.08551791] vs [0.9993,7e-04], chisq 2658.465
## Mismatched frequencies for '12:118511677' f[G,A] = [0.9717072,0.02829284] vs [0.9985,0.0015], chisq 649.8512
## Mismatched frequencies for '12:119769360' f[T,G] = [0.8268862,0.1731138] vs [0.9143,0.0857], chisq 446.0511
## Mismatched frequencies for '12:121341165' f[C,T] = [0.02941176,0.9705882] vs [0.5006,0.4994], chisq 4767.022
## Mismatched frequencies for '12:126665802' f[G,A] = [0.6553708,0.3446292] vs [0.7818,0.2182], chisq 461.485
## Mismatched frequencies for '12:127032717' f[T,C] = [0.95828,0.04171995] vs [0.9956,0.0044], chisq 707.9044
## Mismatched frequencies for '12:128404530' f[C,A] = [0.8308824,0.1691176] vs [0.9106,0.0894], chisq 363.0456
## Mismatched frequencies for '12:131221252' f[T,C] = [0.7474425,0.2525576] vs [0.8488,0.1512], chisq 386.3106
## Mismatched frequencies for '12:131752668' f[T,C] = [0.5861573,0.4138427] vs [0.7168,0.2832], chisq 422.8818
## Mismatched frequencies for '12:133319936' f[T,C] = [0.9248721,0.07512788] vs [0.9837,0.0163], chisq 722.1373
## Mismatched frequencies for '12:133634450' f[A,C] = [0.04939259,0.9506074] vs [0.014,0.986], chisq 339.9365
## Mismatched frequencies for '12:133634950' f[A,G] = [0.9856138,0.01438619] vs [0.9995,5e-04], chisq 369.718
## Mismatched frequencies for '13:22463679' f[A,G] = [0.7304987,0.2695013] vs [0.9539,0.0461], chisq 3470.394
## Mismatched frequencies for '13:23345962' f[T,C] = [0.9034527,0.09654731] vs [0.9914,0.0086], chisq 1820.39
## Mismatched frequencies for '13:24465600' f[C,T] = [0.8567775,0.1432225] vs [0.9966,0.0034], chisq 4051.343
## Mismatched frequencies for '13:25748618' f[A,G] = [0.816656,0.183344] vs [0.9253,0.0747], chisq 739.3521
## Mismatched frequencies for '13:34342840' f[A,C] = [0.3065857,0.6934143] vs [0.009599984,0.9904], chisq 8526.197
## Mismatched frequencies for '13:38373820' f[T,C] = [0.5410805,0.4589194] vs [0.9917,0.0083], chisq 14293.2
## Mismatched frequencies for '13:49949893' f[G,T] = [0.9998401,0.0001598465] vs [0.4843,0.5157], chisq 5680.273
## Mismatched frequencies for '13:55052332' f[T,C] = [0.7560742,0.2439258] vs [0.956,0.044], chisq 2974.912
## Mismatched frequencies for '13:63367870' f[A,C] = [0.7492008,0.2507992] vs [0.9782,0.0218], chisq 4970.827
## Mismatched frequencies for '13:73711300' f[A,G] = [0.795876,0.2041241] vs [0.9011,0.0989], chisq 566.7958
## Mismatched frequencies for '13:75304927' f[C,T] = [0.9686701,0.03132992] vs [0.9963,0.0037], chisq 494.5614
## Mismatched frequencies for '13:77503800' f[T,C] = [0.0001598465,0.9998401] vs [0.781,0.219], chisq 14150
## Mismatched frequencies for '13:78006371' f[A,G] = [0.4074489,0.5925512] vs [0.5651,0.4349], chisq 524.7687
## Mismatched frequencies for '13:81397792' f[C,T] = [0.8359975,0.1640025] vs [0.9978,0.0022], chisq 4987.195
## Mismatched frequencies for '13:81682639' f[C,A] = [0.7463235,0.2536765] vs [0.8745,0.1255], chisq 690.3575
## Mismatched frequencies for '13:94045885' f[C,T] = [0.3438299,0.6561701] vs [0.885,0.115], chisq 9515.043
## Mismatched frequencies for '13:107753866' f[G,A] = [0.9755435,0.02445652] vs [0.9977,0.0023], chisq 440.5714
## Mismatched frequencies for '13:107915119' f[T,G] = [0.5118287,0.4881714] vs [0.8516,0.1484], chisq 3738.834
## Mismatched frequencies for '13:112269367' f[G,T] = [0.02685422,0.9731458] vs [0.9843,0.0157], chisq 34019.32
## Mismatched frequencies for '13:113102334' f[A,C] = [0.9362212,0.06377877] vs [0.6482,0.3518], chisq 2051.748
## Mismatched frequencies for '14:21554855' f[G,T] = [0.9507673,0.04923274] vs [0.994,0.006], chisq 765.0112
## Mismatched frequencies for '14:23548793' f[C,T] = [0.8459079,0.1540921] vs [0.9993,7e-04], chisq 4970.454
## Mismatched frequencies for '14:32300724' f[T,C] = [0.9899297,0.01007033] vs [0.8535,0.1465], chisq 895.9565
## Mismatched frequencies for '14:49247763' f[C,G] = [0.9389386,0.06106138] vs [0.9901,0.0099], chisq 769.8213
## Mismatched frequencies for '14:56103567' f[T,C] = [0.9800191,0.01998082] vs [0.999,0.001], chisq 466.6386
## Mismatched frequencies for '14:56592143' f[G,A] = [0.4007353,0.5992647] vs [0.2534,0.7466], chisq 568.2993
## Mismatched frequencies for '14:57312538' f[T,C] = [0.9253517,0.07464834] vs [0.9985,0.0015], chisq 2136.037
## Mismatched frequencies for '14:59261099' f[T,C] = [0.699968,0.300032] vs [0.9827,0.0173], chisq 7105.806
## Mismatched frequencies for '14:72472184' f[A,G] = [0.8316816,0.1683184] vs [0.9106,0.0894], chisq 356.201
## Mismatched frequencies for '14:74029698' f[A,C] = [0.0001598465,0.9998401] vs [0.2962,0.7038], chisq 2462.449
## Mismatched frequencies for '14:74029856' f[A,G] = [0.0001598465,0.9998401] vs [0.492,0.508], chisq 5235.742
## Mismatched frequencies for '14:78688661' f[G,A] = [0.5880755,0.4119245] vs [0.7301,0.2699], chisq 510.9193
## Mismatched frequencies for '14:92268615' f[T,G] = [0.02317775,0.9768223] vs [0.002200007,0.9978], chisq 415.3408
## Mismatched frequencies for '14:93368707' f[C,T] = [0.4889706,0.5110294] vs [0.6281,0.3719], chisq 425.1097
## Mismatched frequencies for '14:95930458' f[A,C] = [0.9171995,0.08280052] vs [0.9667,0.0333], chisq 324.6366
## Mismatched frequencies for '14:96069535' f[T,C] = [0.3796355,0.6203644] vs [0.5264,0.4736], chisq 451.9502
## Mismatched frequencies for '14:97036715' f[G,A] = [0.5631394,0.4368606] vs [0.8494,0.1506], chisq 2718.801
## Mismatched frequencies for '14:99469391' f[G,T] = [0.8644502,0.1355499] vs [0.9945,0.0055], chisq 3437.732
## Mismatched frequencies for '14:104622780' f[T,G] = [0.3612532,0.6387468] vs [0.4873,0.5127], chisq 334.8135
## Mismatched frequencies for '14:107048307' f[G,C] = [0.776055,0.223945] vs [0.8669,0.1331], chisq 343.7335
## Mismatched frequencies for '14:107101318' f[T,G] = [0.6023018,0.3976982] vs [0.9393,0.0607], chisq 5846.949
## Mismatched frequencies for '14:107151956' f[A,G] = [0.5986253,0.4013747] vs [0.4616,0.5384], chisq 394.3645
## Mismatched frequencies for '15:21150085' f[A,G] = [0.9422954,0.0577046] vs [0.9944,0.0056], chisq 1030.378
## Mismatched frequencies for '15:24496289' f[A,C] = [0.7866049,0.2133951] vs [0.955,0.045], chisq 2220.368
## Mismatched frequencies for '15:28356859' f[C,T] = [0.2036445,0.7963555] vs [0.3371,0.6629], chisq 432.56
## Mismatched frequencies for '15:28365618' f[A,G] = [0.2014066,0.7985933] vs [0.335,0.665], chisq 435.0399
## Mismatched frequencies for '15:41857307' f[G,A] = [0.9686701,0.03132992] vs [0.9998,2e-04], chisq 977.2368
## Mismatched frequencies for '15:48426484' f[A,G] = [0.9988811,0.001118926] vs [0.9464,0.0536], chisq 335.3098
## Mismatched frequencies for '15:48605577' f[A,G] = [0.01918159,0.9808184] vs [0.1235,0.8765], chisq 599.1333
## Mismatched frequencies for '15:50785016' f[A,G] = [0.8805946,0.1194054] vs [0.9999,1e-04], chisq 3929.986
## Mismatched frequencies for '15:55855490' f[T,C] = [0.9203965,0.07960358] vs [0.9922,0.0078], chisq 1421.626
## Mismatched frequencies for '15:56076085' f[C,T] = [0.7663044,0.2336957] vs [0.8728,0.1272], chisq 481.4957
## Mismatched frequencies for '15:67390714' f[A,C] = [0.4709079,0.5290921] vs [0.8287,0.1713], chisq 3802.027
## Mismatched frequencies for '15:72559269' f[T,G] = [0.9784207,0.02157928] vs [0.9998,2e-04], chisq 658.5929
## Mismatched frequencies for '15:74815105' f[C,T] = [0.9996803,0.0003196931] vs [0.9036,0.0964], chisq 651.3857
## Mismatched frequencies for '15:74952207' f[G,A] = [0.9998401,0.0001598465] vs [0.9036,0.0964], chisq 653.7453
## Mismatched frequencies for '15:75292074' f[C,T] = [0.9998401,0.0001598465] vs [0.5682,0.4318], chisq 4231.109
## Mismatched frequencies for '15:75886488' f[G,C] = [0.9998401,0.0001598465] vs [0.8693,0.1307], chisq 915.8571
## Mismatched frequencies for '15:77616859' f[T,C] = [0.9998401,0.0001598465] vs [0.9532,0.0468], chisq 302.4696
## Mismatched frequencies for '15:78707049' f[C,T] = [0.8214514,0.1785486] vs [0.9906,0.0094], chisq 4242.281
## Mismatched frequencies for '15:80610827' f[G,A] = [0.8702046,0.1297954] vs [0.9991,9e-04], chisq 4100.914
## Mismatched frequencies for '15:84952974' f[C,G] = [0.7180307,0.2819693] vs [0.8592,0.1408], chisq 763.9211
## Mismatched frequencies for '15:85394112' f[C,T] = [0.5358056,0.4641944] vs [0.9987,0.0013], chisq 15989.83
## Mismatched frequencies for '15:89381707' f[G,A] = [0.9843351,0.01566496] vs [0.9991,9e-04], chisq 349.2265
## Mismatched frequencies for '15:93211801' f[A,C] = [0.7631074,0.2368926] vs [0.983,0.017], chisq 5096.623
## Mismatched frequencies for '15:93599100' f[G,A] = [0.8970588,0.1029412] vs [0.9821,0.0179], chisq 1238.193
## Mismatched frequencies for '15:96821076' f[C,T] = [0.2904412,0.7095588] vs [0.465,0.535], chisq 649.7023
## Mismatched frequencies for '15:99052745' f[G,A] = [0.9982417,0.001758312] vs [0.9303,0.0697], chisq 438.0403
## Mismatched frequencies for '16:209051' f[A,G] = [0.0001598465,0.9998401] vs [0.3042,0.6958], chisq 2551.808
## Mismatched frequencies for '16:326525' f[A,C] = [0.7834079,0.2165921] vs [0.886,0.114], chisq 486.3139
## Mismatched frequencies for '16:1025983' f[G,A] = [0.6443414,0.3556586] vs [0.8586,0.1414], chisq 1660.309
## Mismatched frequencies for '16:1306971' f[A,G] = [0.4891304,0.5108696] vs [0.9505,0.0495], chisq 10276.66
## Mismatched frequencies for '16:4847640' f[G,A] = [0.5230179,0.4769821] vs [0.7611,0.2389], chisq 1483.416
## Mismatched frequencies for '16:7854028' f[T,C] = [0.856298,0.143702] vs [0.9719,0.0281], chisq 1572.167
## Mismatched frequencies for '16:8270206' f[C,T] = [0.7076406,0.2923593] vs [0.8697,0.1303], chisq 1043.688
## Mismatched frequencies for '16:13267266' f[C,T] = [0.8358376,0.1641624] vs [0.9483,0.0517], chisq 1020.868
## Mismatched frequencies for '16:19187978' f[G,A] = [0.9076087,0.09239131] vs [0.9854,0.0146], chisq 1201.051
## Mismatched frequencies for '16:24886893' f[G,T] = [0.6715153,0.3284846] vs [0.9994,6e-04], chisq 11123.01
## Mismatched frequencies for '16:31068391' f[G,A] = [0.9998401,0.0001598465] vs [0.6282,0.3718], chisq 3376.438
## Mismatched frequencies for '16:31126321' f[C,A] = [0.9998401,0.0001598465] vs [0.7097,0.2903], chisq 2397.562
## Mismatched frequencies for '16:31771943' f[G,T] = [0.2149936,0.7850064] vs [0.6551,0.3449], chisq 4182.023
## Mismatched frequencies for '16:49444686' f[G,A] = [0.9462916,0.05370844] vs [0.9977,0.0023], chisq 1321.215
## Mismatched frequencies for '16:49987511' f[G,A] = [0.5796035,0.4203964] vs [0.984,0.016], chisq 11481.24
## Mismatched frequencies for '16:55803570' f[C,T] = [0.3276854,0.6723146] vs [0.2092,0.7908], chisq 417.9237
## Mismatched frequencies for '16:55862791' f[T,C] = [0.1611253,0.8388747] vs [0.9078,0.0922], chisq 17456.22
## Mismatched frequencies for '16:64399529' f[C,A] = [0.6430626,0.3569373] vs [0.7657,0.2343], chisq 416.2206
## Mismatched frequencies for '16:70893976' f[C,T] = [0.9729859,0.02701407] vs [0.9992,8e-04], chisq 719.5463
## Mismatched frequencies for '16:70913316' f[G,A] = [0.9665921,0.03340793] vs [0.9993,7e-04], chisq 943.4334
## Mismatched frequencies for '16:70934974' f[T,C] = [0.9584399,0.0415601] vs [0.9895,0.0105], chisq 331.245
## Mismatched frequencies for '16:70937582' f[G,A] = [0.957321,0.04267903] vs [0.9985,0.0015], chisq 1100.031
## Mismatched frequencies for '16:70986425' f[T,C] = [0.9836956,0.01630435] vs [0.9996,4e-04], chisq 448.1771
## Mismatched frequencies for '16:72916878' f[T,G] = [0.8909847,0.1090153] vs [0.9941,0.0059], chisq 2529.504
## Mismatched frequencies for '16:73435305' f[A,C] = [0.9042519,0.09574808] vs [0.9933,0.0067], chisq 2015.121
## Mismatched frequencies for '16:76030510' f[T,G] = [0.9546035,0.04539642] vs [0.999,0.001], chisq 1275.575
## Mismatched frequencies for '16:76433088' f[G,A] = [0.0006393862,0.9993606] vs [0.1056,0.8944], chisq 715.3049
## Mismatched frequencies for '16:81190601' f[T,C] = [0.03564578,0.9643542] vs [0.002099991,0.9979], chisq 790.9725
## Mismatched frequencies for '16:84202438' f[A,G] = [0.9659527,0.03404731] vs [0.9941,0.0059], chisq 401.9916
## Mismatched frequencies for '16:89802719' f[G,A] = [0.9998401,0.0001598465] vs [0.8457,0.1543], chisq 1106.259
## Mismatched frequencies for '17:1484516' f[G,A] = [0.5190217,0.4809782] vs [0.762,0.238], chisq 1545.431
## Mismatched frequencies for '17:3989609' f[G,A] = [0.07960358,0.9203965] vs [0.996,0.004], chisq 34167.34
## Mismatched frequencies for '17:7435040' f[G,A] = [0.0001598465,0.9998401] vs [0.3564,0.6436], chisq 3176.852
## Mismatched frequencies for '17:9827890' f[T,G] = [0.5684143,0.4315857] vs [0.6875,0.3125], chisq 335.5472
## Mismatched frequencies for '17:11514367' f[T,C] = [0.620844,0.379156] vs [0.8794,0.1206], chisq 2578.285
## Mismatched frequencies for '17:12852069' f[C,A] = [0.3244885,0.6755115] vs [0.6566,0.3434], chisq 2416.67
## Mismatched frequencies for '17:14139888' f[C,T] = [0.7901215,0.2098785] vs [0.9333,0.0667], chisq 1315.192
## Mismatched frequencies for '17:18585695' f[T,C] = [0.5540282,0.4459719] vs [0.9943,0.0057], chisq 14336.32
## Mismatched frequencies for '17:21220700' f[G,A] = [0.9646739,0.03532609] vs [0.9958,0.0042], chisq 555.8166
## Mismatched frequencies for '17:21319369' f[G,A] = [0.2444054,0.7555946] vs [0.904,0.096], chisq 14128.24
## Mismatched frequencies for '17:21699041' f[C,T] = [0.8280051,0.1719949] vs [0.995,0.005], chisq 4725.594
## Mismatched frequencies for '17:34253191' f[G,C] = [0.8204923,0.1795077] vs [0.9029,0.0971], chisq 362.6641
## Mismatched frequencies for '17:38783117' f[A,C] = [0.3542199,0.64578] vs [0.9798,0.0202], chisq 19264.86
## Mismatched frequencies for '17:39471763' f[C,T] = [0.8211317,0.1788683] vs [0.9114,0.0886], chisq 461.8883
## Mismatched frequencies for '17:42434630' f[A,G] = [0.0001598465,0.9998401] vs [0.6093,0.3907], chisq 7788.918
## Mismatched frequencies for '17:43805194' f[T,G] = [0.4557225,0.5442775] vs [0.6572,0.3428], chisq 908.1495
## Mismatched frequencies for '17:43946370' f[A,C] = [0.9998401,0.0001598465] vs [0.4254,0.5746], chisq 6932.687
## Mismatched frequencies for '17:43950976' f[G,A] = [0.7854859,0.2145141] vs [0.99,0.01], chisq 5326.886
## Mismatched frequencies for '17:45080048' f[G,A] = [0.0001598465,0.9998401] vs [0.3572,0.6428], chisq 3187.039
## Mismatched frequencies for '17:49514993' f[G,A] = [0.9798594,0.02014066] vs [0.9976,0.0024], chisq 315.1628
## Mismatched frequencies for '17:54950123' f[G,A] = [0.8666879,0.133312] vs [0.9539,0.0461], chisq 705.2994
## Mismatched frequencies for '17:64900863' f[A,C] = [0.8818734,0.1181266] vs [0.9915,0.0085], chisq 2469.912
## Mismatched frequencies for '17:68247465' f[G,C] = [0.8077046,0.1922954] vs [0.8879,0.1121], chisq 308.3138
## Mismatched frequencies for '17:79225047' f[C,T] = [0.9773018,0.02269821] vs [0.9966,0.0034], chisq 301.6942
## Mismatched frequencies for '18:3780526' f[C,T] = [0.5308504,0.4691496] vs [0.9924,0.0076], chisq 14817.68
## Mismatched frequencies for '18:3999608' f[A,C] = [0.7445652,0.2554348] vs [0.9969,0.0031], chisq 7963.568
## Mismatched frequencies for '18:5730841' f[C,A] = [0.935422,0.064578] vs [0.9938,0.0062], chisq 1161.82
## Mismatched frequencies for '18:10246737' f[T,G] = [0.9347826,0.06521739] vs [0.9998,2e-04], chisq 2094.08
## Mismatched frequencies for '18:12188629' f[G,A] = [0.0001598465,0.9998401] vs [0.6586,0.3414], chisq 9196.75
## Mismatched frequencies for '18:28168723' f[C,T] = [0.9721867,0.0278133] vs [0.9997,3e-04], chisq 840.8602
## Mismatched frequencies for '18:35998530' f[A,C] = [0.3072251,0.692775] vs [0.5944,0.4056], chisq 1746.433
## Mismatched frequencies for '18:45445114' f[C,T] = [0.4924872,0.5075128] vs [0.9948,0.0052], chisq 16776.44
## Mismatched frequencies for '18:48069527' f[T,G] = [0.76039,0.23961] vs [0.9201,0.0799], chisq 1415.405
## Mismatched frequencies for '18:67986087' f[A,G] = [0.9998401,0.0001598465] vs [0.2533,0.7467], chisq 12487.73
## Mismatched frequencies for '18:72083984' f[G,T] = [0.8126599,0.1873402] vs [0.9997,3e-04], chisq 6202.768
## Mismatched frequencies for '18:74393013' f[C,T] = [0.8591752,0.1408248] vs [0.9671,0.0329], chisq 1278.146
## Mismatched frequencies for '19:485138' f[A,C] = [0.8917839,0.1082161] vs [0.9611,0.0389], chisq 529.6002
## Mismatched frequencies for '19:1038289' f[A,C] = [0.8932225,0.1067775] vs [0.9812,0.0188], chisq 1271.81
## Mismatched frequencies for '19:1050130' f[G,C] = [0.0001598465,0.9998401] vs [0.1982,0.8018], chisq 1484.479
## Mismatched frequencies for '19:5772112' f[C,G] = [0.0001598465,0.9998401] vs [0.1373,0.8627], chisq 968.2474
## Mismatched frequencies for '19:7617734' f[C,G] = [0.5313299,0.4686701] vs [0.8301,0.1699], chisq 2745.052
## Mismatched frequencies for '19:15786713' f[G,T] = [0.9502877,0.04971228] vs [0.9853,0.0147], chisq 322.4445
## Mismatched frequencies for '19:15798465' f[A,G] = [0.7496803,0.2503197] vs [0.9715,0.0285], chisq 4287.615
## Mismatched frequencies for '19:21825360' f[A,G] = [0.2391304,0.7608696] vs [0.6501,0.3499], chisq 3645.881
## Mismatched frequencies for '19:21826268' f[C,T] = [0.2402494,0.7597507] vs [0.6487,0.3513], chisq 3598.878
## Mismatched frequencies for '19:21831442' f[G,A] = [0.23961,0.76039] vs [0.6474,0.3526], chisq 3584.357
## Mismatched frequencies for '19:28309947' f[G,T] = [0.2356138,0.7643862] vs [0.3888,0.6112], chisq 531.6551
## Mismatched frequencies for '19:36311013' f[T,C] = [0.851023,0.148977] vs [0.9451,0.0549], chisq 712.2002
## Mismatched frequencies for '19:38717143' f[T,C] = [0.7567136,0.2432864] vs [0.8584,0.1416], chisq 407.6366
## Mismatched frequencies for '19:39600126' f[C,G] = [0.9960038,0.003996164] vs [0.7979,0.2021], chisq 1458.269
## Mismatched frequencies for '19:41518897' f[T,G] = [0.3732417,0.6267583] vs [0.9932,0.0068], chisq 21107.66
## Mismatched frequencies for '19:41642122' f[C,T] = [0.9413363,0.05866368] vs [0.267,0.733], chisq 10166.85
## Mismatched frequencies for '19:45366830' f[A,G] = [0.9996803,0.0003196931] vs [0.6133,0.3867], chisq 3573.699
## Mismatched frequencies for '19:49292195' f[A,G] = [0.8467072,0.1532928] vs [0.9975,0.0025], chisq 4563.086
## Mismatched frequencies for '19:51274851' f[A,C] = [0.1459399,0.8540601] vs [0.9419,0.0581], chisq 21887.36
## Mismatched frequencies for '19:53799922' f[A,G] = [0.5327686,0.4672314] vs [0.9997,3e-04], chisq 16338.53
## Mismatched frequencies for '19:54604822' f[T,C] = [0.4745844,0.5254156] vs [0.712,0.288], chisq 1344.853
## Mismatched frequencies for '19:54737010' f[C,A] = [0.6486573,0.3513427] vs [0.9001,0.0999], chisq 2745.884
## Mismatched frequencies for '19:55146469' f[G,A] = [0.8527814,0.1472187] vs [0.9981,0.0019], chisq 4478.852
## Mismatched frequencies for '19:55231539' f[G,A] = [0.9483696,0.05163043] vs [0.9983,0.0017], chisq 1352.233
## Mismatched frequencies for '19:55233850' f[C,T] = [0.4897698,0.5102302] vs [0.9856,0.0144], chisq 15070.45
## Mismatched frequencies for '19:55239223' f[G,A] = [0.4984015,0.5015985] vs [0.9861,0.0139], chisq 14835.77
## Mismatched frequencies for '19:55249570' f[G,C] = [0.6710358,0.3289642] vs [0.9894,0.0106], chisq 9137.612
## Mismatched frequencies for '19:55252385' f[T,G] = [0.4020141,0.5979859] vs [0.6941,0.3059], chisq 1959.166
## Mismatched frequencies for '19:55301811' f[T,C] = [0.8636509,0.1363491] vs [0.9892,0.0108], chisq 2745.425
## Mismatched frequencies for '19:55302983' f[C,T] = [0.3909846,0.6090153] vs [0.9819,0.0181], chisq 18195.07
## Mismatched frequencies for '19:55304308' f[G,A] = [0.7934783,0.2065217] vs [0.9938,0.0062], chisq 5677.568
## Mismatched frequencies for '19:55306283' f[T,C] = [0.7909207,0.2090793] vs [0.9937,0.0063], chisq 5746.668
## Mismatched frequencies for '19:55306645' f[T,G] = [0.7910805,0.2089194] vs [0.9937,0.0063], chisq 5741.254
## Mismatched frequencies for '19:55307868' f[A,G] = [0.1764706,0.8235294] vs [0.9573,0.0427], chisq 22789.26
## Mismatched frequencies for '19:55309886' f[T,G] = [0.1753517,0.8246483] vs [0.5592,0.4408], chisq 3091.501
## Mismatched frequencies for '19:55311067' f[C,A] = [0.8428708,0.1571291] vs [0.9619,0.0381], chisq 1375.154
## Mismatched frequencies for '19:55314287' f[A,G] = [0.175032,0.824968] vs [0.9472,0.0528], chisq 21418.49
## Mismatched frequencies for '19:55315440' f[A,G] = [0.1755115,0.8244885] vs [0.6219,0.3781], chisq 4222.698
## Mismatched frequencies for '19:55315616' f[C,T] = [0.4378197,0.5621803] vs [0.9729,0.0271], chisq 14921.33
## Mismatched frequencies for '19:55316329' f[A,G] = [0.6352302,0.3647698] vs [0.9891,0.0109], chisq 10354.95
## Mismatched frequencies for '19:55324635' f[T,C] = [0.4995205,0.5004795] vs [0.8948,0.1052], chisq 5834.232
## Mismatched frequencies for '19:55326739' f[T,C] = [0.5858376,0.4141624] vs [0.9577,0.0423], chisq 7893.346
## Mismatched frequencies for '19:55328993' f[G,C] = [0.7028453,0.2971547] vs [0.8057,0.1943], chisq 333.4208
## Mismatched frequencies for '19:55329021' f[A,G] = [0.7034847,0.2965154] vs [0.8154,0.1846], chisq 406.5492
## Mismatched frequencies for '19:55372167' f[T,G] = [0.4408568,0.5591432] vs [0.7561,0.2439], chisq 2507.297
## Mismatched frequencies for '19:55494111' f[G,C] = [0.9820972,0.01790281] vs [0.9981,0.0019], chisq 300.8442
## Mismatched frequencies for '19:56837117' f[T,C] = [0.8686061,0.1313939] vs [0.9557,0.0443], chisq 723.9095
## Mismatched frequencies for '19:58380385' f[T,C] = [0.723945,0.276055] vs [0.8252,0.1748], chisq 347.8199
## Mismatched frequencies for '1:1900102' f[G,A] = [0.7408888,0.2591113] vs [0.9998,2e-04], chisq 8733.89
## Mismatched frequencies for '1:11968317' f[C,T] = [0.6742327,0.3257673] vs [0.9996,4e-04], chisq 11071.23
## Mismatched frequencies for '1:12861693' f[C,T] = [0.9654732,0.03452686] vs [0.9997,3e-04], chisq 1060.331
## Mismatched frequencies for '1:12865657' f[A,C] = [0.9653133,0.0346867] vs [0.9995,5e-04], chisq 1024.055
## Mismatched frequencies for '1:12866014' f[A,G] = [0.9641944,0.03580563] vs [0.9994,6e-04], chisq 1040.58
## Mismatched frequencies for '1:12866327' f[C,G] = [0.9654732,0.03452686] vs [0.9996,4e-04], chisq 1039.284
## Mismatched frequencies for '1:12866472' f[T,G] = [0.9654732,0.03452686] vs [0.9994,6e-04], chisq 998.9814
## Mismatched frequencies for '1:12866704' f[C,T] = [0.9649936,0.03500639] vs [0.999,0.001], chisq 940.25
## Mismatched frequencies for '1:12866974' f[T,G] = [0.965633,0.03436701] vs [0.999,0.001], chisq 919.7614
## Mismatched frequencies for '1:12867288' f[A,G] = [0.9654732,0.03452686] vs [0.9997,3e-04], chisq 1060.331
## Mismatched frequencies for '1:12867774' f[G,C] = [0.9657928,0.03420716] vs [0.9991,9e-04], chisq 932.3648
## Mismatched frequencies for '1:12868100' f[T,C] = [0.9654732,0.03452686] vs [0.998,0.002], chisq 770.5692
## Mismatched frequencies for '1:12868579' f[T,A] = [0.9657928,0.03420716] vs [0.9992,8e-04], chisq 950.5828
## Mismatched frequencies for '1:12869122' f[G,T] = [0.9654732,0.03452686] vs [0.9994,6e-04], chisq 998.9814
## Mismatched frequencies for '1:12870842' f[C,T] = [0.9645141,0.03548593] vs [0.9996,4e-04], chisq 1070.638
## Mismatched frequencies for '1:12871828' f[G,A] = [0.9649936,0.03500639] vs [0.9994,6e-04], chisq 1014.576
## Mismatched frequencies for '1:12921311' f[G,A] = [0.9661125,0.03388747] vs [0.9999,1e-04], chisq 1083.363
## Mismatched frequencies for '1:13703662' f[G,A] = [0.3443095,0.6556905] vs [0.5567,0.4433], chisq 948.3712
## Mismatched frequencies for '1:13808732' f[C,T] = [0.4507673,0.5492327] vs [0.2823,0.7177], chisq 696.5807
## Mismatched frequencies for '1:14975844' f[T,C] = [0.743766,0.256234] vs [0.9991,9e-04], chisq 8470.684
## Mismatched frequencies for '1:16116197' f[A,G] = [0.9900895,0.009910486] vs [0.9999,1e-04], chisq 300.1455
## Mismatched frequencies for '1:17517402' f[A,G] = [0.6636829,0.3363171] vs [0.9643,0.0357], chisq 6143.204
## Mismatched frequencies for '1:21806619' f[T,C] = [0.4534846,0.5465153] vs [0.6937,0.3063], chisq 1339.228
## Mismatched frequencies for '1:21806621' f[T,G] = [0.4523657,0.5476342] vs [0.6923,0.3077], chisq 1333.63
## Mismatched frequencies for '1:21942683' f[C,T] = [0.112532,0.887468] vs [0.2184,0.7816], chisq 365.6643
## Mismatched frequencies for '1:24286897' f[C,T] = [0.5602621,0.4397379] vs [0.2306,0.7694], chisq 2804.25
## Mismatched frequencies for '1:24294587' f[G,A] = [0.560422,0.439578] vs [0.3221,0.6779], chisq 1292.131
## Mismatched frequencies for '1:24300238' f[T,C] = [0.5594629,0.4405371] vs [0.2775,0.7225], chisq 1906.928
## Mismatched frequencies for '1:24335409' f[T,C] = [0.05722506,0.942775] vs [0.2948,0.7052], chisq 1552.734
## Mismatched frequencies for '1:25594166' f[G,T] = [0.5863171,0.4136829] vs [0.9994,6e-04], chisq 14252.95
## Mismatched frequencies for '1:25600747' f[C,A] = [0.5850384,0.4149616] vs [0.9995,5e-04], chisq 14324.03
## Mismatched frequencies for '1:25643553' f[T,C] = [0.0001598465,0.9998401] vs [0.08039999,0.9196], chisq 537.0069
## Mismatched frequencies for '1:61922365' f[G,A] = [0.9171995,0.08280052] vs [0.9979,0.0021], chisq 2291.498
## Mismatched frequencies for '1:69824817' f[G,A] = [0.9426151,0.05738491] vs [0.9911,0.0089], chisq 749.4746
## Mismatched frequencies for '1:80984855' f[A,G] = [0.7063619,0.2936381] vs [0.9275,0.0725], chisq 2657.816
## Mismatched frequencies for '1:86583237' f[G,A] = [0.862532,0.137468] vs [0.07669997,0.9233], chisq 19973.38
## Mismatched frequencies for '1:87802660' f[A,C] = [0.9793798,0.0206202] vs [0.9998,2e-04], chisq 627.3376
## Mismatched frequencies for '1:90271868' f[G,A] = [0.5752877,0.4247123] vs [0.7174,0.2826], chisq 499.2412
## Mismatched frequencies for '1:91618183' f[T,G] = [0.7658248,0.2341752] vs [0.9999,1e-04], chisq 7879.101
## Mismatched frequencies for '1:114736303' f[G,T] = [0.9141624,0.0858376] vs [0.9996,4e-04], chisq 2734.865
## Mismatched frequencies for '1:114738663' f[T,G] = [0.3286445,0.6713555] vs [0.09179997,0.9082], chisq 2600.561
## Mismatched frequencies for '1:116131216' f[A,T] = [0.9998401,0.0001598465] vs [0.9516,0.0484], chisq 313.3256
## Mismatched frequencies for '1:119282172' f[G,A] = [0.8714834,0.1285166] vs [0.9999,1e-04], chisq 4238.027
## Mismatched frequencies for '1:120116433' f[T,G] = [0.7939578,0.2060422] vs [0.983,0.017], chisq 4139.976
## Mismatched frequencies for '1:144874815' f[T,C] = [0.4749041,0.5250959] vs [0.6205,0.3795], chisq 462.1555
## Mismatched frequencies for '1:144922523' f[C,T] = [0.5310102,0.4689898] vs [0.667,0.333], chisq 423.6606
## Mismatched frequencies for '1:156007988' f[G,A] = [0.0001598465,0.9998401] vs [0.9847,0.0153], chisq 35320.74
## Mismatched frequencies for '1:163116046' f[T,C] = [0.8887468,0.1112532] vs [0.984,0.016], chisq 1565.403
## Mismatched frequencies for '1:168262527' f[G,T] = [0.7789322,0.2210678] vs [0.8923,0.1077], chisq 612.114
## Mismatched frequencies for '1:168549491' f[G,A] = [0.4824169,0.5175831] vs [0.9731,0.0269], chisq 13308.55
## Mismatched frequencies for '1:170543775' f[T,C] = [0.0001598465,0.9998401] vs [0.6442,0.3558], chisq 8759.37
## Mismatched frequencies for '1:171650001' f[T,C] = [0.0001598465,0.9998401] vs [0.7995,0.2005], chisq 15166.96
## Mismatched frequencies for '1:171651950' f[T,G] = [0.0003196931,0.9996803] vs [0.8004,0.1996], chisq 15213.41
## Mismatched frequencies for '1:175322306' f[T,C] = [0.89578,0.10422] vs [0.981,0.019], chisq 1201.968
## Mismatched frequencies for '1:179611864' f[C,A] = [0.6149297,0.3850703] vs [0.3595,0.6405], chisq 1425.059
## Mismatched frequencies for '1:182701436' f[A,C] = [0.933344,0.06665601] vs [0.9988,0.0012], chisq 1931.485
## Mismatched frequencies for '1:196712674' f[C,G] = [0.5335678,0.4664322] vs [0.9999,1e-04], chisq 16355.49
## Mismatched frequencies for '1:198618104' f[C,A] = [0.6718351,0.328165] vs [0.7896,0.2104], chisq 411.4848
## Mismatched frequencies for '1:199219576' f[A,G] = [0.9389386,0.06106138] vs [0.9903,0.0097], chisq 782.9471
## Mismatched frequencies for '1:203789596' f[A,G] = [0.8022698,0.1977302] vs [0.9898,0.0102], chisq 4747.6
## Mismatched frequencies for '1:205755144' f[T,C] = [0.0001598465,0.9998401] vs [0.2551,0.7449], chisq 2027.408
## Mismatched frequencies for '1:207508099' f[G,A] = [0.3200128,0.6799872] vs [0.9999,1e-04], chisq 24779.98
## Mismatched frequencies for '1:213814235' f[G,C] = [0.9253517,0.07464834] vs [0.9855,0.0145], chisq 803.0743
## Mismatched frequencies for '1:224938853' f[A,C] = [0.9277493,0.07225064] vs [0.9791,0.0209], chisq 488.0015
## Mismatched frequencies for '1:226910570' f[T,C] = [0.4784207,0.5215793] vs [0.8147,0.1853], chisq 3255.499
## Mismatched frequencies for '1:234409403' f[A,G] = [0.9477302,0.05226982] vs [0.9997,3e-04], chisq 1643.533
## Mismatched frequencies for '1:241252676' f[G,A] = [0.9742647,0.02573529] vs [0.9979,0.0021], chisq 498.0683
## Mismatched frequencies for '1:244367585' f[C,T] = [0.9710678,0.02893222] vs [0.9982,0.0018], chisq 628.3996
## Mismatched frequencies for '1:245480149' f[A,G] = [0.9426151,0.05738491] vs [0.9933,0.0067], chisq 918.7864
## Mismatched frequencies for '1:248524992' f[A,G] = [0.8534207,0.1465793] vs [0.9925,0.0075], chisq 3490.303
## Mismatched frequencies for '1:248738991' f[G,A] = [0.8593351,0.140665] vs [0.9909,0.0091], chisq 3084.836
## Mismatched frequencies for '1:248745700' f[G,A] = [0.857257,0.142743] vs [0.9917,0.0083], chisq 3256.106
## Mismatched frequencies for '1:248818415' f[T,C] = [0.1355499,0.8644502] vs [0.03460002,0.9654], chisq 1106.353
## Mismatched frequencies for '1:249168436' f[G,A] = [0.994725,0.005274936] vs [0.8864,0.1136], chisq 708.5787
## Mismatched frequencies for '20:1561224' f[C,A] = [0.2154732,0.7845268] vs [0.5244,0.4756], chisq 2007.61
## Mismatched frequencies for '20:3163565' f[T,C] = [0.0001598465,0.9998401] vs [0.4084,0.5916], chisq 3882.231
## Mismatched frequencies for '20:7175140' f[T,C] = [0.314578,0.685422] vs [0.9893,0.0107], chisq 22662.47
## Mismatched frequencies for '20:8219513' f[T,G] = [0.6785486,0.3214514] vs [0.7897,0.2103], chisq 367.884
## Mismatched frequencies for '20:10412596' f[C,T] = [0.4955243,0.5044757] vs [0.9499,0.0501], chisq 10004.17
## Mismatched frequencies for '20:19263894' f[C,A] = [0.9795396,0.02046036] vs [0.9981,0.0019], chisq 370.7089
## Mismatched frequencies for '20:22780399' f[T,G] = [0.4538043,0.5461956] vs [0.6631,0.3369], chisq 984.9436
## Mismatched frequencies for '20:30060292' f[T,C] = [0.971867,0.02813299] vs [0.9989,0.0011], chisq 705.0053
## Mismatched frequencies for '20:39280362' f[G,A] = [0.7933184,0.2066816] vs [0.9938,0.0062], chisq 5682.979
## Mismatched frequencies for '20:42304421' f[G,A] = [0.9779412,0.02205882] vs [0.9979,0.0021], chisq 394.5537
## Mismatched frequencies for '20:44121064' f[T,C] = [0.3556586,0.6443414] vs [0.8707,0.1293], chisq 8314.718
## Mismatched frequencies for '20:54217118' f[A,G] = [0.9020141,0.09798593] vs [0.9956,0.0044], chisq 2400.572
## Mismatched frequencies for '20:55126644' f[A,G] = [0.9653133,0.0346867] vs [0.9946,0.0054], chisq 448.6234
## Mismatched frequencies for '20:60550975' f[G,T] = [0.9998401,0.0001598465] vs [0.9419,0.0581], chisq 379.7961
## Mismatched frequencies for '20:60883783' f[A,C] = [0.9747443,0.02525576] vs [0.9981,0.0019], chisq 507.2492
## Mismatched frequencies for '21:14973865' f[G,A] = [0.4550831,0.5449169] vs [0.9826,0.0174], chisq 15850.71
## Mismatched frequencies for '21:18297514' f[G,A] = [0.1788683,0.8211317] vs [0.3208,0.6792], chisq 505.2306
## Mismatched frequencies for '21:23325246' f[C,A] = [0.04427749,0.9557225] vs [0.002900004,0.9971], chisq 946.0737
## Mismatched frequencies for '21:25544491' f[G,A] = [0.7784527,0.2215473] vs [0.9514,0.0486], chisq 2219.748
## Mismatched frequencies for '21:28568183' f[A,C] = [0.5255755,0.4744245] vs [0.2127,0.7873], chisq 2647.51
## Mismatched frequencies for '21:33290068' f[A,C] = [0.9758632,0.02413683] vs [0.9998,2e-04], chisq 742.0242
## Mismatched frequencies for '21:34169318' f[G,A] = [0.2402494,0.7597507] vs [0.9996,4e-04], chisq 28025
## Mismatched frequencies for '21:37762059' f[G,A] = [0.9641944,0.03580563] vs [0.9937,0.0063], chisq 417.2621
## Mismatched frequencies for '21:38704103' f[A,G] = [0.8719629,0.1280371] vs [0.9874,0.0126], chisq 2309.022
## Mismatched frequencies for '21:42248016' f[T,C] = [0.9133632,0.08663683] vs [0.9986,0.0014], chisq 2550.911
## Mismatched frequencies for '21:44692443' f[T,G] = [0.4878517,0.5121483] vs [0.9846,0.0154], chisq 14963.69
## Mismatched frequencies for '22:17264565' f[G,T] = [0.137468,0.862532] vs [0.4844,0.5156], chisq 2578.308
## Mismatched frequencies for '22:17265124' f[A,C] = [0.1357097,0.8642903] vs [0.3132,0.6868], chisq 811.7243
## Mismatched frequencies for '22:17265194' f[G,A] = [0.6168478,0.3831522] vs [0.9886,0.0114], chisq 10925.69
## Mismatched frequencies for '22:20131258' f[C,T] = [0.9816176,0.01838235] vs [0.9998,2e-04], chisq 554.484
## Mismatched frequencies for '22:20258194' f[C,T] = [0.943734,0.05626598] vs [0.9843,0.0157], chisq 396.717
## Mismatched frequencies for '22:24376584' f[G,A] = [0.5834399,0.4165601] vs [0.9999,1e-04], chisq 14477.87
## Mismatched frequencies for '22:27549382' f[A,G] = [0.9319054,0.06809463] vs [0.9923,0.0077], chisq 1115.488
## Mismatched frequencies for '22:30426636' f[G,T] = [0.6131713,0.3868286] vs [0.9977,0.0023], chisq 12868.85
## Mismatched frequencies for '22:33084511' f[A,C] = [0.9547634,0.04523657] vs [0.9973,0.0027], chisq 1001.14
## Mismatched frequencies for '22:40810946' f[T,C] = [0.8668478,0.1331522] vs [0.9625,0.0375], chisq 956.9969
## Mismatched frequencies for '22:41586320' f[C,T] = [0.9996803,0.0003196931] vs [0.3782,0.6218], chisq 8118.721
## Mismatched frequencies for '22:42463813' f[C,T] = [0.3038683,0.6961317] vs [0.9987,0.0013], chisq 25159.68
## Mismatched frequencies for '22:42563529' f[T,G] = [0.7746164,0.2253836] vs [0.9907,0.0093], chisq 5796.457
## Mismatched frequencies for '22:45177118' f[C,A] = [0.9838555,0.0161445] vs [0.9996,4e-04], chisq 443.0553
## Mismatched frequencies for '22:47068935' f[G,T] = [0.5930307,0.4069693] vs [0.9997,3e-04], chisq 14073.3
## Mismatched frequencies for '22:47236944' f[G,T] = [0.5543478,0.4456522] vs [0.9409,0.0591], chisq 7340.641
## Mismatched frequencies for '22:47308426' f[A,G] = [0.9664322,0.03356778] vs [0.9951,0.0049], chisq 456.6449
## Mismatched frequencies for '2:1878858' f[A,G] = [0.9381394,0.06186061] vs [0.9983,0.0017], chisq 1681.796
## Mismatched frequencies for '2:4964187' f[T,C] = [0.05690537,0.9430946] vs [0.776,0.224], chisq 12084.33
## Mismatched frequencies for '2:6254570' f[G,T] = [0.8495844,0.1504156] vs [0.9915,0.0085], chisq 3470.704
## Mismatched frequencies for '2:6774326' f[C,T] = [0.8700448,0.1299552] vs [0.9731,0.0269], chisq 1337.471
## Mismatched frequencies for '2:17244315' f[G,T] = [0.8462276,0.1537724] vs [0.9207,0.0793], chisq 350.5455
## Mismatched frequencies for '2:31830912' f[T,C] = [0.0001598465,0.9998401] vs [0.2682,0.7318], chisq 2161.871
## Mismatched frequencies for '2:32316921' f[A,C] = [0.0001598465,0.9998401] vs [0.754,0.246], chisq 12819.73
## Mismatched frequencies for '2:32347785' f[G,A] = [0.9952046,0.004795396] vs [0.6504,0.3496], chisq 3005.093
## Mismatched frequencies for '2:32537827' f[C,T] = [0.9996803,0.0003196931] vs [0.4677,0.5323], chisq 6006.957
## Mismatched frequencies for '2:32565001' f[T,C] = [0.0001598465,0.9998401] vs [0.6255,0.3745], chisq 8224.532
## Mismatched frequencies for '2:37160230' f[T,C] = [0.980179,0.01982097] vs [0.9979,0.0021], chisq 333.5729
## Mismatched frequencies for '2:37962837' f[G,T] = [0.9659527,0.03404731] vs [0.9971,0.0029], chisq 646.7103
## Mismatched frequencies for '2:37981672' f[T,C] = [0.9659527,0.03404731] vs [0.9997,3e-04], chisq 1044.63
## Mismatched frequencies for '2:37985630' f[G,A] = [0.9637148,0.03628517] vs [0.9961,0.0039], chisq 607.9986
## Mismatched frequencies for '2:37989055' f[C,A] = [0.9661125,0.03388747] vs [0.9998,2e-04], chisq 1061.044
## Mismatched frequencies for '2:38000388' f[C,A] = [0.9680307,0.03196931] vs [0.9984,0.0016], chisq 748.4552
## Mismatched frequencies for '2:41800275' f[T,C] = [0.9932864,0.006713555] vs [0.9291,0.0709], chisq 380.0168
## Mismatched frequencies for '2:43158673' f[A,G] = [0.9998401,0.0001598465] vs [0.9279,0.0721], chisq 477.7624
## Mismatched frequencies for '2:45279806' f[C,T] = [0.9359015,0.06409846] vs [0.9881,0.0119], chisq 717.5038
## Mismatched frequencies for '2:45971841' f[G,C] = [0.0001598465,0.9998401] vs [0.9991,9e-04], chisq 38503.87
## Mismatched frequencies for '2:46721330' f[T,C] = [0.9627557,0.03724425] vs [0.9913,0.0087], chisq 325.3992
## Mismatched frequencies for '2:49320296' f[A,G] = [0.9590793,0.04092072] vs [0.9977,0.0023], chisq 924.1336
## Mismatched frequencies for '2:50906611' f[G,A] = [0.9128836,0.08711637] vs [0.9983,0.0017], chisq 2508.128
## Mismatched frequencies for '2:55184133' f[C,T] = [0.9707481,0.02925192] vs [0.9994,6e-04], chisq 827.8978
## Mismatched frequencies for '2:57150068' f[C,T] = [0.8324809,0.1675192] vs [0.9887,0.0113], chisq 3636.498
## Mismatched frequencies for '2:65016728' f[A,C] = [0.8972186,0.1027813] vs [0.9921,0.0079], chisq 2081.324
## Mismatched frequencies for '2:68237549' f[C,G] = [0.607257,0.392743] vs [0.7397,0.2603], chisq 454.7216
## Mismatched frequencies for '2:80134482' f[T,C] = [0.89578,0.10422] vs [0.9992,8e-04], chisq 3261.699
## Mismatched frequencies for '2:81429344' f[A,G] = [0.3091432,0.6908568] vs [0.9804,0.0196], chisq 21169.78
## Mismatched frequencies for '2:85571180' f[G,A] = [0.009111254,0.9908888] vs [0.994,0.006], chisq 36911.41
## Mismatched frequencies for '2:107130593' f[T,C] = [0.7097186,0.2902813] vs [0.9638,0.0362], chisq 4750.747
## Mismatched frequencies for '2:115530968' f[C,T] = [0.5517903,0.4482097] vs [0.7492,0.2508], chisq 1008.081
## Mismatched frequencies for '2:118718692' f[T,G] = [0.9566816,0.04331841] vs [0.9993,7e-04], chisq 1265.708
## Mismatched frequencies for '2:128553972' f[T,G] = [0.9560422,0.0439578] vs [0.9949,0.0051], chisq 704.147
## Mismatched frequencies for '2:132155352' f[T,C] = [0.5119885,0.4880115] vs [0.9984,0.0016], chisq 16827.82
## Mismatched frequencies for '2:132201153' f[A,C] = [0.8091432,0.1908568] vs [0.898,0.102], chisq 402.8067
## Mismatched frequencies for '2:133208747' f[T,C] = [0.3757992,0.6242008] vs [0.7275,0.2725], chisq 2937.599
## Mismatched frequencies for '2:135353183' f[C,T] = [0.9998401,0.0001598465] vs [0.4947,0.5053], chisq 5481.43
## Mismatched frequencies for '2:135837906' f[C,A] = [0.6737532,0.3262468] vs [0.5224,0.4776], chisq 484.8969
## Mismatched frequencies for '2:135907088' f[A,G] = [0.6783888,0.3216113] vs [0.5255,0.4745], chisq 495.4355
## Mismatched frequencies for '2:135911422' f[T,C] = [0.7460038,0.2539962] vs [0.6239,0.3761], chisq 340.9534
## Mismatched frequencies for '2:136092061' f[C,A] = [0.7097186,0.2902813] vs [0.5622,0.4378], chisq 470.5241
## Mismatched frequencies for '2:136381348' f[G,A] = [0.6862212,0.3137788] vs [0.5312,0.4688], chisq 510.6802
## Mismatched frequencies for '2:136407479' f[A,G] = [0.717711,0.282289] vs [0.5689,0.4311], chisq 481.2572
## Mismatched frequencies for '2:136608646' f[G,A] = [0.3080243,0.6919757] vs [0.462,0.538], chisq 505.4323
## Mismatched frequencies for '2:136707982' f[T,C] = [0.6935742,0.3064258] vs [0.5383,0.4617], chisq 514.1271
## Mismatched frequencies for '2:136808949' f[C,T] = [0.3102621,0.6897379] vs [0.4403,0.5597], chisq 364.2849
## Mismatched frequencies for '2:136817088' f[C,T] = [0.3232097,0.6767903] vs [0.4502,0.5498], chisq 345.1854
## Mismatched frequencies for '2:136817616' f[C,A] = [0.3025895,0.6974105] vs [0.4204,0.5796], chisq 302.9993
## Mismatched frequencies for '2:136820076' f[C,T] = [0.332321,0.667679] vs [0.4669,0.5331], chisq 384.6337
## Mismatched frequencies for '2:146573366' f[G,C] = [0.08615729,0.9138427] vs [0.2589,0.7411], chisq 881.1403
## Mismatched frequencies for '2:150008521' f[C,T] = [0.6668798,0.3331202] vs [0.4782,0.5218], chisq 747.1675
## Mismatched frequencies for '2:164028465' f[G,T] = [0.8981777,0.1018223] vs [0.9982,0.0018], chisq 2975.629
## Mismatched frequencies for '2:173166555' f[A,C] = [0.4483696,0.5516304] vs [0.9526,0.0474], chisq 11880.64
## Mismatched frequencies for '2:177526156' f[C,T] = [0.3038683,0.6961317] vs [0.1363,0.8637], chisq 1077.592
## Mismatched frequencies for '2:181628138' f[G,A] = [0.5656969,0.4343031] vs [0.9685,0.0315], chisq 9754.871
## Mismatched frequencies for '2:188530745' f[G,T] = [0.8494245,0.1505754] vs [0.9783,0.0217], chisq 2139.939
## Mismatched frequencies for '2:191039833' f[A,C] = [0.8681266,0.1318734] vs [0.9927,0.0073], chisq 3051.891
## Mismatched frequencies for '2:199529912' f[T,G] = [0.5524297,0.4475703] vs [0.8187,0.1813], chisq 2137.365
## Mismatched frequencies for '2:220646513' f[C,T] = [0.8879476,0.1120524] vs [0.9819,0.0181], chisq 1439.259
## Mismatched frequencies for '2:231861044' f[C,T] = [0.4472506,0.5527493] vs [0.5732,0.4268], chisq 336.5955
## Mismatched frequencies for '2:232422661' f[T,C] = [0.6297954,0.3702046] vs [0.8093,0.1907], chisq 985.9131
## Mismatched frequencies for '2:233865263' f[T,C] = [0.0003196931,0.9996803] vs [0.7416,0.2584], chisq 12257.21
## Mismatched frequencies for '2:236932963' f[T,G] = [0.0001598465,0.9998401] vs [0.4008,0.5992], chisq 3773.357
## Mismatched frequencies for '2:238454154' f[C,A] = [0.8714834,0.1285166] vs [0.9824,0.0176], chisq 1883.764
## Mismatched frequencies for '2:243012156' f[C,T] = [0.9080882,0.09191176] vs [0.9723,0.0277], chisq 590.5345
## Mismatched frequencies for '3:701167' f[C,G] = [0.8391944,0.1608056] vs [0.9986,0.0014], chisq 5046.021
## Mismatched frequencies for '3:702675' f[C,T] = [0.8283248,0.1716752] vs [0.9796,0.0204], chisq 2802.79
## Mismatched frequencies for '3:7982974' f[G,A] = [0.8767583,0.1232417] vs [0.997,0.003], chisq 3459.505
## Mismatched frequencies for '3:14665102' f[A,G] = [0.6849425,0.3150576] vs [0.9779,0.0221], chisq 6968.084
## Mismatched frequencies for '3:14982761' f[T,G] = [0.9090473,0.09095269] vs [0.9818,0.0182], chisq 955.5281
## Mismatched frequencies for '3:16136844' f[C,T] = [0.4899297,0.5100703] vs [0.9445,0.0555], chisq 9650.749
## Mismatched frequencies for '3:16944375' f[T,C] = [0.9443734,0.0556266] vs [0.9982,0.0018], chisq 1463.364
## Mismatched frequencies for '3:18465822' f[T,C] = [0.747922,0.252078] vs [0.992,0.008], chisq 6916.507
## Mismatched frequencies for '3:25479983' f[G,A] = [0.9699488,0.03005115] vs [0.8755,0.1245], chisq 480.8609
## Mismatched frequencies for '3:26464531' f[C,T] = [0.8487852,0.1512148] vs [0.9383,0.0617], chisq 597.364
## Mismatched frequencies for '3:26586944' f[G,A] = [0.7690217,0.2309783] vs [0.9812,0.0188], chisq 4698.529
## Mismatched frequencies for '3:32668211' f[T,G] = [0.75,0.25] vs [0.9508,0.0492], chisq 2820.955
## Mismatched frequencies for '3:32668285' f[G,A] = [0.7428069,0.2571931] vs [0.8932,0.1068], chisq 1041.533
## Mismatched frequencies for '3:32668312' f[C,T] = [0.742647,0.257353] vs [0.9498,0.0502], chisq 2936.044
## Mismatched frequencies for '3:33428299' f[G,A] = [0.5383632,0.4616368] vs [0.7219,0.2781], chisq 829.3964
## Mismatched frequencies for '3:38604549' f[T,C] = [0.9451726,0.05482737] vs [0.9973,0.0027], chisq 1296.056
## Mismatched frequencies for '3:39812041' f[A,C] = [0.8976982,0.1023018] vs [0.9994,6e-04], chisq 3241.103
## Mismatched frequencies for '3:46414975' f[G,T] = [0.8849105,0.1150895] vs [0.9812,0.0188], chisq 1465.972
## Mismatched frequencies for '3:48191998' f[T,C] = [0.0003196931,0.9996803] vs [0.3258,0.6742], chisq 2798.402
## Mismatched frequencies for '3:55101126' f[A,G] = [0.9790601,0.0209399] vs [0.9999,1e-04], chisq 659.4376
## Mismatched frequencies for '3:64395184' f[C,T] = [0.4851343,0.5148658] vs [0.8638,0.1362], chisq 4747.764
## Mismatched frequencies for '3:67426600' f[T,C] = [0.3414322,0.6585678] vs [0.9791,0.0209], chisq 19647.34
## Mismatched frequencies for '3:75759142' f[C,A] = [0.6472186,0.3527813] vs [0.9876,0.0124], chisq 9670.088
## Mismatched frequencies for '3:95166891' f[G,A] = [0.7116368,0.2883632] vs [0.9821,0.0179], chisq 6638.599
## Mismatched frequencies for '3:98981063' f[A,G] = [0.05706522,0.9429348] vs [0.9801,0.0199], chisq 31820.03
## Mismatched frequencies for '3:100211602' f[T,C] = [0.5113491,0.4886509] vs [0.7642,0.2358], chisq 1675.827
## Mismatched frequencies for '3:106168369' f[G,A] = [0.8865089,0.113491] vs [0.9797,0.0203], chisq 1335.708
## Mismatched frequencies for '3:119080495' f[C,T] = [0.9998401,0.0001598465] vs [0.594,0.406], chisq 3847.623
## Mismatched frequencies for '3:119094955' f[C,A] = [0.8742008,0.1257992] vs [0.9809,0.0191], chisq 1705.405
## Mismatched frequencies for '3:127410959' f[G,T] = [0.2241049,0.7758951] vs [0.4367,0.5633], chisq 985.8932
## Mismatched frequencies for '3:128651241' f[T,C] = [0.8561381,0.1438619] vs [0.9983,0.0017], chisq 4406.543
## Mismatched frequencies for '3:148557726' f[T,C] = [0.9533248,0.04667519] vs [0.9991,9e-04], chisq 1336.134
## Mismatched frequencies for '3:154751912' f[G,A] = [0.03580563,0.9641944] vs [0.1298,0.8702], chisq 456.6721
## Mismatched frequencies for '3:154796360' f[C,T] = [0.03005115,0.9699488] vs [0.1254,0.8746], chisq 487.1195
## Mismatched frequencies for '3:157638127' f[C,G] = [0.5295716,0.4704284] vs [0.6597,0.3403], chisq 384.8969
## Mismatched frequencies for '3:160580493' f[A,C] = [0.92711,0.07289003] vs [0.991,0.009], chisq 1130.012
## Mismatched frequencies for '3:166531571' f[C,T] = [0.5484335,0.4515665] vs [0.9103,0.0897], chisq 5442.388
## Mismatched frequencies for '3:182809650' f[A,C] = [0.0001598465,0.9998401] vs [0.7704,0.2296], chisq 13607.46
## Mismatched frequencies for '3:182824432' f[G,A] = [0.0001598465,0.9998401] vs [0.5002,0.4998], chisq 5386.104
## Mismatched frequencies for '3:186604336' f[A,G] = [0.8054668,0.1945332] vs [0.9016,0.0984], chisq 480.1954
## Mismatched frequencies for '3:190355633' f[A,T] = [0.9560422,0.0439578] vs [0.9933,0.0067], chisq 579.86
## Mismatched frequencies for '3:194362620' f[T,G] = [0.6926151,0.3073849] vs [0.8006,0.1994], chisq 360.1689
## Mismatched frequencies for '4:1291246' f[C,T] = [0.8523018,0.1476982] vs [0.981,0.019], chisq 2273.92
## Mismatched frequencies for '4:2303243' f[C,T] = [0.6254795,0.3745205] vs [0.9995,5e-04], chisq 12826.16
## Mismatched frequencies for '4:3076076' f[T,C] = [0.9755435,0.02445652] vs [0.9972,0.0028], chisq 393.0612
## Mismatched frequencies for '4:3592019' f[G,A] = [0.9379795,0.06202046] vs [0.9904,0.0096], chisq 812.419
## Mismatched frequencies for '4:3605147' f[G,A] = [0.9379795,0.06202046] vs [0.9888,0.0112], chisq 711.7786
## Mismatched frequencies for '4:3621602' f[G,A] = [0.9405371,0.05946292] vs [0.9912,0.0088], chisq 806.3941
## Mismatched frequencies for '4:9784542' f[A,C] = [0.1363491,0.8636509] vs [0.9642,0.0358], chisq 25532.85
## Mismatched frequencies for '4:11529603' f[A,T] = [0.7202686,0.2797314] vs [0.9882,0.0118], chisq 7234.562
## Mismatched frequencies for '4:12477649' f[G,A] = [0.9120844,0.0879156] vs [0.9906,0.0094], chisq 1497.313
## Mismatched frequencies for '4:17939740' f[G,T] = [0.0001598465,0.9998401] vs [0.831,0.169], chisq 17137.96
## Mismatched frequencies for '4:18293651' f[T,C] = [0.6216432,0.3783568] vs [0.9895,0.0105], chisq 10913.92
## Mismatched frequencies for '4:20551993' f[G,A] = [0.6767903,0.3232097] vs [0.946,0.054], chisq 4320.635
## Mismatched frequencies for '4:20936007' f[G,C] = [0.9857737,0.01422634] vs [0.9146,0.0854], chisq 388.2402
## Mismatched frequencies for '4:30127760' f[G,T] = [0.9744245,0.02557545] vs [0.9992,8e-04], chisq 673.6833
## Mismatched frequencies for '4:31272763' f[C,G] = [0.8148977,0.1851023] vs [0.9197,0.0803], chisq 656.3559
## Mismatched frequencies for '4:46391821' f[A,G] = [0.8813939,0.1186061] vs [0.9861,0.0139], chisq 1925.55
## Mismatched frequencies for '4:73418842' f[A,G] = [0.44789,0.55211] vs [0.9985,0.0015], chisq 19330.2
## Mismatched frequencies for '4:75321980' f[T,C] = [0.550032,0.449968] vs [0.9962,0.0038], chisq 14891.45
## Mismatched frequencies for '4:77344127' f[G,A] = [0.9996803,0.0003196931] vs [0.5412,0.4588], chisq 4657.94
## Mismatched frequencies for '4:77602749' f[T,G] = [0.9398977,0.0601023] vs [0.9995,5e-04], chisq 1858.574
## Mismatched frequencies for '4:87024234' f[G,A] = [0.9143223,0.08567775] vs [0.9813,0.0187], chisq 821.3636
## Mismatched frequencies for '4:90452160' f[C,T] = [0.9998401,0.0001598465] vs [0.7501,0.2499], chisq 1975.07
## Mismatched frequencies for '4:90591239' f[A,G] = [0.0001598465,0.9998401] vs [0.9217,0.0783], chisq 25372.86
## Mismatched frequencies for '4:90592345' f[T,C] = [0.0001598465,0.9998401] vs [0.922,0.078], chisq 25409.26
## Mismatched frequencies for '4:91586662' f[T,C] = [0.0001598465,0.9998401] vs [0.2171,0.7829], chisq 1657.795
## Mismatched frequencies for '4:102669185' f[G,A] = [0.9490089,0.05099105] vs [0.9977,0.0023], chisq 1235.863
## Mismatched frequencies for '4:137382244' f[T,G] = [0.8089834,0.1910166] vs [0.94,0.06], chisq 1207.32
## Mismatched frequencies for '4:142470636' f[C,T] = [0.9998401,0.0001598465] vs [0.8819,0.1181], chisq 817.6266
## Mismatched frequencies for '4:155440449' f[C,A] = [0.3220908,0.6779092] vs [0.4735,0.5265], chisq 486.0443
## Mismatched frequencies for '4:179411693' f[G,A] = [0.3390345,0.6609655] vs [0.5057,0.4943], chisq 583.8629
## Mismatched frequencies for '4:181313921' f[C,T] = [0.7014067,0.2985933] vs [0.8118,0.1882], chisq 390.7709
## Mismatched frequencies for '4:183292410' f[A,G] = [0.9171995,0.08280052] vs [0.9733,0.0267], chisq 478.7348
## Mismatched frequencies for '4:186509747' f[C,T] = [0.2298593,0.7701406] vs [0.4874,0.5126], chisq 1408.193
## Mismatched frequencies for '4:190641170' f[T,C] = [0.1867008,0.8132992] vs [0.299,0.701], chisq 327.5127
## Mismatched frequencies for '5:1331685' f[T,C] = [0.8439898,0.1560102] vs [0.9466,0.0534], chisq 848.6202
## Mismatched frequencies for '5:1533335' f[C,T] = [0.316656,0.683344] vs [0.668,0.332], chisq 2724.89
## Mismatched frequencies for '5:1600739' f[T,C] = [0.7456841,0.2543159] vs [0.8459,0.1541], chisq 372.8508
## Mismatched frequencies for '5:2029967' f[T,C] = [0.9779412,0.02205882] vs [0.9974,0.0026], chisq 347.8051
## Mismatched frequencies for '5:7958214' f[G,T] = [0.7691816,0.2308184] vs [0.9525,0.0475], chisq 2476.887
## Mismatched frequencies for '5:9896107' f[T,C] = [0.0004795397,0.9995205] vs [0.4942,0.5058], chisq 5268.719
## Mismatched frequencies for '5:10131452' f[A,G] = [0.9472507,0.05274936] vs [0.9962,0.0038], chisq 1086.224
## Mismatched frequencies for '5:11163046' f[T,C] = [0.9325448,0.06745524] vs [0.9995,5e-04], chisq 2101.763
## Mismatched frequencies for '5:11480758' f[A,G] = [0.5890345,0.4109655] vs [0.7496,0.2504], chisq 676.2445
## Mismatched frequencies for '5:15172029' f[C,T] = [0.5748082,0.4251918] vs [0.9296,0.0704], chisq 5926.844
## Mismatched frequencies for '5:17221636' f[T,C] = [0.2610294,0.7389706] vs [0.754,0.246], chisq 5804.848
## Mismatched frequencies for '5:18118599' f[G,A] = [0.5565857,0.4434143] vs [0.9306,0.0694], chisq 6495.334
## Mismatched frequencies for '5:21247099' f[T,C] = [0.9611573,0.03884271] vs [0.9988,0.0012], chisq 1028.302
## Mismatched frequencies for '5:23578824' f[G,A] = [0.9685102,0.03148977] vs [0.8714,0.1286], chisq 493.8539
## Mismatched frequencies for '5:33730396' f[T,G] = [0.8914642,0.1085358] vs [0.9799,0.0201], chisq 1235.5
## Mismatched frequencies for '5:33951116' f[G,T] = [0.05051151,0.9494885] vs [0.1407,0.8593], chisq 387.0899
## Mismatched frequencies for '5:33951693' f[C,G] = [0.02525576,0.9747443] vs [0.1216,0.8784], chisq 513.6346
## Mismatched frequencies for '5:33958959' f[C,A] = [0.02237852,0.9776215] vs [0.1038,0.8962], chisq 421.8612
## Mismatched frequencies for '5:59754585' f[C,A] = [0.9240729,0.07592711] vs [0.9958,0.0042], chisq 1736.8
## Mismatched frequencies for '5:61098932' f[C,T] = [0.8227302,0.1772698] vs [0.9729,0.0271], chisq 2427.848
## Mismatched frequencies for '5:65586348' f[G,C] = [0.8668478,0.1331522] vs [0.969,0.031], chisq 1209.745
## Mismatched frequencies for '5:78108455' f[T,C] = [0.9042519,0.09574808] vs [0.9921,0.0079], chisq 1873.781
## Mismatched frequencies for '5:79693011' f[C,T] = [0.9998401,0.0001598465] vs [0.9307,0.0693], chisq 457.9738
## Mismatched frequencies for '5:81638942' f[G,T] = [0.4349424,0.5650575] vs [0.7416,0.2584], chisq 2314.593
## Mismatched frequencies for '5:97248284' f[C,T] = [0.9571611,0.04283887] vs [0.9923,0.0077], chisq 490.7469
## Mismatched frequencies for '5:109200149' f[T,A] = [0.9827366,0.01726343] vs [0.9984,0.0016], chisq 312.8675
## Mismatched frequencies for '5:115652144' f[C,G] = [0.8351982,0.1648018] vs [0.9468,0.0532], chisq 987.54
## Mismatched frequencies for '5:117874247' f[T,G] = [0.8016304,0.1983696] vs [0.9258,0.0742], chisq 947.2833
## Mismatched frequencies for '5:126747263' f[C,T] = [0.9828965,0.01710358] vs [0.9989,0.0011], chisq 365.8821
## Mismatched frequencies for '5:138654635' f[C,T] = [0.02957161,0.9704284] vs [0.9999,1e-04], chisq 37343.94
## Mismatched frequencies for '5:144073413' f[G,T] = [0.9744245,0.02557545] vs [0.9997,3e-04], chisq 767.8877
## Mismatched frequencies for '5:156332148' f[T,C] = [0.9995205,0.0004795397] vs [0.942,0.058], chisq 374.5486
## Mismatched frequencies for '5:163163718' f[T,G] = [0.9712276,0.02877238] vs [0.9984,0.0016], chisq 650.497
## Mismatched frequencies for '5:175342088' f[C,T] = [0.9710678,0.02893222] vs [0.9986,0.0014], chisq 683.9448
## Mismatched frequencies for '5:176779857' f[C,A] = [0.9213555,0.0786445] vs [0.9902,0.0098], chisq 1213.681
## Mismatched frequencies for '5:176813246' f[G,A] = [0.9726663,0.02733376] vs [0.9968,0.0032], chisq 433.4528
## Mismatched frequencies for '5:179071958' f[C,G] = [0.2228261,0.7771739] vs [0.7642,0.2358], chisq 7027.482
## Mismatched frequencies for '5:179545299' f[T,C] = [0.9998401,0.0001598465] vs [0.1299,0.8701], chisq 20120.03
## Mismatched frequencies for '6:541619' f[C,T] = [0.9143223,0.08567775] vs [0.9695,0.0305], chisq 421.8138
## Mismatched frequencies for '6:1371932' f[A,G] = [0.7914003,0.2085998] vs [0.9989,0.0011], chisq 6757.39
## Mismatched frequencies for '6:1501602' f[A,G] = [0.7902814,0.2097187] vs [0.9821,0.0179], chisq 4150.777
## Mismatched frequencies for '6:9056678' f[A,G] = [0.9483696,0.05163043] vs [0.9934,0.0066], chisq 777.393
## Mismatched frequencies for '6:10756728' f[C,T] = [0.04811381,0.9518862] vs [0.9969,0.0031], chisq 35793.44
## Mismatched frequencies for '6:14918945' f[T,C] = [0.7987532,0.2012468] vs [0.9995,5e-04], chisq 6637.859
## Mismatched frequencies for '6:14938481' f[C,A] = [0.7798913,0.2201087] vs [0.8963,0.1037], chisq 661.2231
## Mismatched frequencies for '6:24033565' f[A,T] = [0.8662084,0.1337916] vs [0.9567,0.0433], chisq 787.2034
## Mismatched frequencies for '6:24422391' f[G,A] = [0.8414322,0.1585678] vs [0.9727,0.0273], chisq 1958.366
## Mismatched frequencies for '6:25759066' f[G,T] = [0.9998401,0.0001598465] vs [0.6017,0.3983], chisq 3737.998
## Mismatched frequencies for '6:27472223' f[T,G] = [0.2413683,0.7586317] vs [0.6128,0.3872], chisq 2927.278
## Mismatched frequencies for '6:29067772' f[C,T] = [0.9306266,0.0693734] vs [0.9786,0.0214], chisq 426.5683
## Mismatched frequencies for '6:29750776' f[C,T] = [0.9998401,0.0001598465] vs [0.9023,0.0977], chisq 663.3801
## Mismatched frequencies for '6:29795913' f[A,T] = [0.9998401,0.0001598465] vs [0.9522,0.0478], chisq 309.2511
## Mismatched frequencies for '6:29800886' f[G,A] = [0.9538044,0.04619565] vs [0.9996,4e-04], chisq 1421.798
## Mismatched frequencies for '6:29837127' f[C,T] = [0.9601982,0.03980179] vs [0.9897,0.0103], chisq 307.6604
## Mismatched frequencies for '6:29916429' f[C,T] = [0.9295077,0.07049233] vs [0.9952,0.0048], chisq 1491.71
## Mismatched frequencies for '6:29918976' f[A,G] = [0.9288683,0.07113171] vs [0.9835,0.0165], chisq 634.2326
## Mismatched frequencies for '6:30652782' f[G,A] = [0.8686061,0.1313939] vs [0.9994,6e-04], chisq 4221.335
## Mismatched frequencies for '6:30931059' f[C,T] = [0.9323849,0.06761509] vs [0.9792,0.0208], chisq 417.1532
## Mismatched frequencies for '6:31052361' f[G,A] = [0.9998401,0.0001598465] vs [0.9383,0.0617], chisq 404.7558
## Mismatched frequencies for '6:31169494' f[T,C] = [0.0001598465,0.9998401] vs [0.56,0.44], chisq 6600.504
## Mismatched frequencies for '6:31268004' f[C,T] = [0.6945332,0.3054667] vs [0.8606,0.1394], chisq 1043.739
## Mismatched frequencies for '6:31268332' f[A,C] = [0.6943734,0.3056266] vs [0.8913,0.1087], chisq 1684.343
## Mismatched frequencies for '6:31268993' f[A,G] = [0.6943734,0.3056266] vs [0.8168,0.1832], chisq 485.9701
## Mismatched frequencies for '6:31298240' f[G,A] = [0.6246803,0.3753197] vs [0.9441,0.0559], chisq 5578.026
## Mismatched frequencies for '6:31303428' f[C,T] = [0.5047954,0.4952046] vs [0.8346,0.1654], chisq 3339.29
## Mismatched frequencies for '6:31303879' f[A,G] = [0.5046356,0.4953645] vs [0.7444,0.2556], chisq 1451.802
## Mismatched frequencies for '6:31306233' f[C,G] = [0.9512468,0.0487532] vs [0.9887,0.0113], chisq 431.5651
## Mismatched frequencies for '6:31309184' f[T,G] = [0.814578,0.185422] vs [0.9786,0.0214], chisq 3094.486
## Mismatched frequencies for '6:31324615' f[C,T] = [0.7085997,0.2914003] vs [0.9578,0.0422], chisq 4305.453
## Mismatched frequencies for '6:32361613' f[G,A] = [0.8519821,0.1480179] vs [0.9477,0.0523], chisq 760.7556
## Mismatched frequencies for '6:32361842' f[G,A] = [0.856298,0.143702] vs [0.9739,0.0261], chisq 1684.572
## Mismatched frequencies for '6:32371743' f[C,G] = [0.9290282,0.07097187] vs [0.9885,0.0115], chisq 897.9039
## Mismatched frequencies for '6:32419860' f[T,G] = [0.9998401,0.0001598465] vs [0.8557,0.1443], chisq 1024.533
## Mismatched frequencies for '6:32431927' f[C,T] = [0.409367,0.590633] vs [0.5745,0.4255], chisq 577.4247
## Mismatched frequencies for '6:32432582' f[G,T] = [0.7402493,0.2597506] vs [0.956,0.044], chisq 3361.483
## Mismatched frequencies for '6:32484729' f[T,C] = [0.1740729,0.8259271] vs [0.8287,0.1713], chisq 11222.67
## Mismatched frequencies for '6:32486402' f[C,T] = [0.9889706,0.01102941] vs [0.9134,0.0866], chisq 435.0398
## Mismatched frequencies for '6:32489214' f[G,T] = [0.1673593,0.8326406] vs [0.795,0.205], chisq 9723.145
## Mismatched frequencies for '6:32523627' f[A,G] = [0.2963555,0.7036445] vs [0.7078,0.2922], chisq 3860.326
## Mismatched frequencies for '6:32526731' f[A,C] = [0.2896419,0.7103581] vs [0.4326,0.5674], chisq 443.3208
## Mismatched frequencies for '6:32526994' f[G,A] = [0.9733056,0.02669437] vs [0.9978,0.0022], chisq 514.3109
## Mismatched frequencies for '6:32546696' f[G,A] = [0.6779092,0.3220908] vs [0.9875,0.0125], chisq 8578.62
## Mismatched frequencies for '6:32546879' f[A,G] = [0.6775895,0.3224105] vs [0.9831,0.0169], chisq 7913.876
## Mismatched frequencies for '6:32549782' f[C,T] = [0.2872443,0.7127557] vs [0.4074,0.5926], chisq 318.9237
## Mismatched frequencies for '6:32550876' f[G,C] = [0.1675192,0.8324809] vs [0.4086,0.5914], chisq 1308.359
## Mismatched frequencies for '6:32551350' f[T,A] = [0.1670397,0.8329604] vs [0.4377,0.5623], chisq 1609.407
## Mismatched frequencies for '6:32551382' f[A,T] = [0.1692775,0.8307225] vs [0.3293,0.6707], chisq 635.4768
## Mismatched frequencies for '6:32560839' f[C,T] = [0.8203325,0.1796675] vs [0.9684,0.0316], chisq 2193.091
## Mismatched frequencies for '6:32560934' f[G,C] = [0.6777493,0.3222506] vs [0.8885,0.1115], chisq 1873.38
## Mismatched frequencies for '6:32570609' f[C,T] = [0.2824489,0.7175512] vs [0.4263,0.5737], chisq 451.1304
## Mismatched frequencies for '6:32571961' f[T,C] = [0.8200128,0.1799872] vs [0.9213,0.0787], chisq 625.5441
## Mismatched frequencies for '6:32572113' f[G,A] = [0.5147059,0.4852941] vs [0.642,0.358], chisq 361.2911
## Mismatched frequencies for '6:32572251' f[T,C] = [0.8682864,0.1317136] vs [0.9655,0.0345], chisq 1039.581
## Mismatched frequencies for '6:32573562' f[T,C] = [0.8190537,0.1809463] vs [0.9159,0.0841], chisq 547.88
## Mismatched frequencies for '6:32573760' f[C,T] = [0.9828965,0.01710358] vs [0.9996,4e-04], chisq 473.8142
## Mismatched frequencies for '6:32575325' f[A,G] = [0.6608056,0.3391944] vs [0.8016,0.1984], chisq 603.6896
## Mismatched frequencies for '6:32576064' f[G,C] = [0.5877557,0.4122443] vs [0.7694,0.2306], chisq 899.6541
## Mismatched frequencies for '6:32576145' f[C,A] = [0.6213235,0.3786765] vs [0.8196,0.1804], chisq 1232.573
## Mismatched frequencies for '6:32576626' f[G,A] = [0.5928708,0.4071292] vs [0.8249,0.1751], chisq 1687.05
## Mismatched frequencies for '6:32576795' f[C,T] = [0.2826087,0.7173913] vs [0.5793,0.4207], chisq 1854.21
## Mismatched frequencies for '6:32577784' f[C,T] = [0.2824489,0.7175512] vs [0.41,0.59], chisq 358.9176
## Mismatched frequencies for '6:32577785' f[A,G] = [0.2824489,0.7175512] vs [0.4136,0.5864], chisq 378.4154
## Mismatched frequencies for '6:32585500' f[C,T] = [0.8703644,0.1296355] vs [0.9778,0.0222], chisq 1593.643
## Mismatched frequencies for '6:32585638' f[A,C] = [0.8594949,0.1405051] vs [0.9403,0.0597], chisq 507.6963
## Mismatched frequencies for '6:32589326' f[C,A] = [0.6604859,0.3395141] vs [0.9227,0.0773], chisq 3423.661
## Mismatched frequencies for '6:32592868' f[T,C] = [0.6630435,0.3369565] vs [0.8737,0.1263], chisq 1729.026
## Mismatched frequencies for '6:32593010' f[C,A] = [0.5179028,0.4820972] vs [0.7673,0.2327], chisq 1643.893
## Mismatched frequencies for '6:32593392' f[G,A] = [0.680147,0.319853] vs [0.8472,0.1528], chisq 992.66
## Mismatched frequencies for '6:32593507' f[G,A] = [0.5195013,0.4804987] vs [0.7606,0.2394], chisq 1517.924
## Mismatched frequencies for '6:32594217' f[G,T] = [0.6774297,0.3225703] vs [0.7983,0.2017], chisq 444.8035
## Mismatched frequencies for '6:32594274' f[T,C] = [0.1967711,0.8032289] vs [0.3595,0.6405], chisq 625.1689
## Mismatched frequencies for '6:32594916' f[A,G] = [0.5190217,0.4809782] vs [0.8084,0.1916], chisq 2419.583
## Mismatched frequencies for '6:32594998' f[C,T] = [0.8981777,0.1018223] vs [0.9773,0.0227], chisq 959.5273
## Mismatched frequencies for '6:32595027' f[A,G] = [0.5190217,0.4809782] vs [0.7066,0.2934], chisq 843.0585
## Mismatched frequencies for '6:32595117' f[C,T] = [0.6774297,0.3225703] vs [0.5573,0.4427], chisq 310.0848
## Mismatched frequencies for '6:32600057' f[A,G] = [0.7480819,0.2519182] vs [0.8975,0.1025], chisq 1058.828
## Mismatched frequencies for '6:32603634' f[G,C] = [0.7389706,0.2610294] vs [0.9453,0.0547], chisq 2781.51
## Mismatched frequencies for '6:32603906' f[T,C] = [0.7664642,0.2335358] vs [0.9358,0.0642], chisq 1808.388
## Mismatched frequencies for '6:32607124' f[T,C] = [0.7381713,0.2618286] vs [0.9266,0.0734], chisq 2001.34
## Mismatched frequencies for '6:32607926' f[T,G] = [0.3692455,0.6307545] vs [0.5933,0.4067], chisq 1067.2
## Mismatched frequencies for '6:32608096' f[G,T] = [0.4168798,0.5831202] vs [0.5555,0.4445], chisq 404.9466
## Mismatched frequencies for '6:32608150' f[G,A] = [0.7391304,0.2608696] vs [0.8386,0.1614], chisq 355.5349
## Mismatched frequencies for '6:32608269' f[G,A] = [0.8081841,0.1918159] vs [0.9059,0.0941], chisq 512.0591
## Mismatched frequencies for '6:32609038' f[C,T] = [0.8706841,0.1293159] vs [0.9696,0.0304], chisq 1160.4
## Mismatched frequencies for '6:32609453' f[C,T] = [0.973945,0.02605499] vs [0.8931,0.1069], chisq 403.1721
## Mismatched frequencies for '6:32612034' f[C,T] = [0.4170396,0.5829604] vs [0.7834,0.2166], chisq 3524.978
## Mismatched frequencies for '6:32612488' f[A,C] = [0.4173593,0.5826406] vs [0.6122,0.3878], chisq 817.8355
## Mismatched frequencies for '6:32613712' f[G,A] = [0.4168798,0.5831202] vs [0.7462,0.2538], chisq 2673.877
## Mismatched frequencies for '6:32614552' f[C,T] = [0.419757,0.580243] vs [0.8145,0.1855], chisq 4367.7
## Mismatched frequencies for '6:32614917' f[C,T] = [0.9560422,0.0439578] vs [0.8478,0.1522], chisq 527.2265
## Mismatched frequencies for '6:32615458' f[G,A] = [0.4162404,0.5837596] vs [0.8068,0.1932], chisq 4197.709
## Mismatched frequencies for '6:32620775' f[C,A] = [0.4178389,0.5821611] vs [0.7068,0.2932], chisq 1952.12
## Mismatched frequencies for '6:32623430' f[G,A] = [0.4171995,0.5828005] vs [0.7856,0.2144], chisq 3579.441
## Mismatched frequencies for '6:32625869' f[T,C] = [0.4224744,0.5775256] vs [0.8224,0.1776], chisq 4570.867
## Mismatched frequencies for '6:32628389' f[A,C] = [0.8150575,0.1849425] vs [0.9426,0.0574], chisq 1186.426
## Mismatched frequencies for '6:32631348' f[G,A] = [0.7744565,0.2255435] vs [0.9598,0.0402], chisq 2762.74
## Mismatched frequencies for '6:32633697' f[C,A] = [0.7747762,0.2252238] vs [0.9805,0.0195], chisq 4444.113
## Mismatched frequencies for '6:32634355' f[G,A] = [0.8150575,0.1849425] vs [0.8965,0.1035], chisq 337.6285
## Mismatched frequencies for '6:32634467' f[C,T] = [0.7744565,0.2255435] vs [0.8611,0.1389], chisq 304.0279
## Mismatched frequencies for '6:32635293' f[C,G] = [0.8118606,0.1881394] vs [0.8972,0.1028], chisq 370.9063
## Mismatched frequencies for '6:32637016' f[A,G] = [0.5324488,0.4675511] vs [0.6534,0.3466], chisq 330.6407
## Mismatched frequencies for '6:32651047' f[A,G] = [0.768702,0.231298] vs [0.9281,0.0719], chisq 1512.498
## Mismatched frequencies for '6:32652400' f[C,T] = [0.769821,0.230179] vs [0.9139,0.0861], chisq 1117.8
## Mismatched frequencies for '6:32652826' f[A,C] = [0.7674233,0.2325767] vs [0.9424,0.0576], chisq 2045.987
## Mismatched frequencies for '6:32656544' f[A,G] = [0.7675831,0.2324169] vs [0.8561,0.1439], chisq 308.613
## Mismatched frequencies for '6:32667850' f[C,G] = [0.889546,0.110454] vs [0.9486,0.0514], chisq 319.6535
## Mismatched frequencies for '6:32688189' f[G,A] = [0.8208121,0.179188] vs [0.9236,0.0764], chisq 656.9772
## Mismatched frequencies for '6:32695647' f[C,A] = [0.9758632,0.02413683] vs [0.9961,0.0039], chisq 301.7989
## Mismatched frequencies for '6:32706974' f[G,A] = [0.6067775,0.3932225] vs [0.7208,0.2792], chisq 326.2298
## Mismatched frequencies for '6:32710557' f[C,T] = [0.9434143,0.05658568] vs [0.9921,0.0079], chisq 801.2863
## Mismatched frequencies for '6:32717515' f[G,A] = [0.9966432,0.003356778] vs [0.9276,0.0724], chisq 434.8969
## Mismatched frequencies for '6:32726788' f[T,C] = [0.9055307,0.09446931] vs [0.9916,0.0084], chisq 1781.906
## Mismatched frequencies for '6:32752429' f[A,G] = [0.9288683,0.07113171] vs [0.9751,0.0249], chisq 357.951
## Mismatched frequencies for '6:33048467' f[G,T] = [0.7808504,0.2191496] vs [0.9174,0.0826], chisq 1043.741
## Mismatched frequencies for '6:33048661' f[A,G] = [0.7941176,0.2058824] vs [0.8938,0.1062], chisq 485.5462
## Mismatched frequencies for '6:33048663' f[G,A] = [0.7730179,0.2269821] vs [0.8681,0.1319], chisq 377.6351
## Mismatched frequencies for '6:33050045' f[T,C] = [0.6946931,0.3053069] vs [0.8134,0.1866], chisq 452.2617
## Mismatched frequencies for '6:33051820' f[G,A] = [0.6910166,0.3089834] vs [0.9056,0.0944], chisq 2148.694
## Mismatched frequencies for '6:33053942' f[T,C] = [0.7533568,0.2466432] vs [0.8875,0.1125], chisq 812.5036
## Mismatched frequencies for '6:33054141' f[T,C] = [0.6886189,0.3113811] vs [0.9604,0.0396], chisq 5062.588
## Mismatched frequencies for '6:33054177' f[T,C] = [0.6910166,0.3089834] vs [0.9697,0.0303], chisq 5849.206
## Mismatched frequencies for '6:33054207' f[A,G] = [0.6906969,0.3093031] vs [0.9428,0.0572], chisq 3773.917
## Mismatched frequencies for '6:33054235' f[T,G] = [0.6911765,0.3088235] vs [0.9466,0.0534], chisq 3993.098
## Mismatched frequencies for '6:33054281' f[G,A] = [0.6908568,0.3091432] vs [0.9378,0.0622], chisq 3489.355
## Mismatched frequencies for '6:33126865' f[C,T] = [0.8233696,0.1766304] vs [0.9173,0.0827], chisq 524.1486
## Mismatched frequencies for '6:41165977' f[A,G] = [0.8324809,0.1675192] vs [0.9614,0.0386], chisq 1559.696
## Mismatched frequencies for '6:51413785' f[G,T] = [0.9363811,0.06361893] vs [0.9964,0.0036], chisq 1440.298
## Mismatched frequencies for '6:52860408' f[T,C] = [0.6582481,0.3417519] vs [0.9789,0.0211], chisq 7979.784
## Mismatched frequencies for '6:70929911' f[G,T] = [0.682225,0.3177749] vs [0.9974,0.0026], chisq 10287.04
## Mismatched frequencies for '6:94636574' f[A,G] = [0.9365409,0.06345908] vs [0.9972,0.0028], chisq 1551.43
## Mismatched frequencies for '6:119425014' f[C,T] = [0.9998401,0.0001598465] vs [0.4495,0.5505], chisq 6392.468
## Mismatched frequencies for '6:135418635' f[C,T] = [0.7351342,0.2648657] vs [0.994,0.006], chisq 7719.864
## Mismatched frequencies for '6:136582549' f[G,A] = [0.978101,0.02189898] vs [0.9992,8e-04], chisq 557.1982
## Mismatched frequencies for '6:136589425' f[G,T] = [0.8329604,0.1670397] vs [0.9963,0.0037], chisq 4795.695
## Mismatched frequencies for '6:136589431' f[C,T] = [0.9693095,0.03069054] vs [0.9995,5e-04], chisq 893.9403
## Mismatched frequencies for '6:136590698' f[C,T] = [0.002557545,0.9974425] vs [0.9523,0.0477], chisq 29447
## Mismatched frequencies for '6:136597449' f[G,C] = [0.9721867,0.0278133] vs [0.9965,0.0035], chisq 420.5792
## Mismatched frequencies for '6:137314088' f[A,G] = [0.001918159,0.9980819] vs [0.5382,0.4618], chisq 6091.397
## Mismatched frequencies for '6:138017298' f[G,T] = [0.01646419,0.9835358] vs [0.9991,9e-04], chisq 37753.24
## Mismatched frequencies for '6:144267183' f[G,A] = [0.4773018,0.5226982] vs [0.2314,0.7686], chisq 1605.01
## Mismatched frequencies for '6:147461542' f[T,C] = [0.9733056,0.02669437] vs [0.9986,0.0014], chisq 615.0961
## Mismatched frequencies for '6:163787700' f[C,T] = [0.728101,0.271899] vs [0.998,0.002], chisq 8779.616
## Mismatched frequencies for '6:167591954' f[G,A] = [0.7610294,0.2389706] vs [0.8869,0.1131], chisq 718.7161
## Mismatched frequencies for '7:4311008' f[T,C] = [0.672954,0.327046] vs [0.969,0.031], chisq 6331.253
## Mismatched frequencies for '7:5021902' f[T,G] = [0.9675512,0.03244885] vs [0.9971,0.0029], chisq 601.4657
## Mismatched frequencies for '7:7349534' f[G,T] = [0.8834718,0.1165281] vs [0.9777,0.0223], chisq 1289.614
## Mismatched frequencies for '7:8327961' f[C,A] = [0.543798,0.4562021] vs [0.3257,0.6743], chisq 1081.7
## Mismatched frequencies for '7:8713833' f[A,C] = [0.300032,0.699968] vs [0.7034,0.2966], chisq 3696.355
## Mismatched frequencies for '7:12077763' f[C,T] = [0.9568414,0.04315857] vs [0.9949,0.0051], chisq 683.1432
## Mismatched frequencies for '7:13990566' f[C,A] = [0.9405371,0.05946292] vs [0.9951,0.0049], chisq 1154.497
## Mismatched frequencies for '7:22040815' f[G,T] = [0.9523658,0.04763427] vs [0.9988,0.0012], chisq 1311.198
## Mismatched frequencies for '7:33801976' f[G,C] = [0.1664002,0.8335997] vs [0.6349,0.3651], chisq 4670.783
## Mismatched frequencies for '7:36118292' f[T,C] = [0.8908248,0.1091752] vs [0.9978,0.0022], chisq 3142.448
## Mismatched frequencies for '7:40703118' f[G,A] = [0.9509271,0.04907289] vs [0.9931,0.0069], chisq 689.7833
## Mismatched frequencies for '7:65265874' f[C,T] = [0.9536445,0.0463555] vs [0.9873,0.0127], chisq 333.6375
## Mismatched frequencies for '7:65842544' f[G,A] = [0.5826406,0.4173593] vs [0.9828,0.0172], chisq 11177.37
## Mismatched frequencies for '7:65842545' f[T,C] = [0.5786445,0.4213555] vs [0.9953,0.0047], chisq 13627.05
## Mismatched frequencies for '7:76140330' f[G,A] = [0.9848146,0.01518542] vs [0.9997,3e-04], chisq 430.8845
## Mismatched frequencies for '7:76270287' f[T,C] = [0.4378197,0.5621803] vs [0.7423,0.2577], chisq 2286.189
## Mismatched frequencies for '7:93031998' f[G,A] = [0.9998401,0.0001598465] vs [0.9449,0.0551], chisq 359.1172
## Mismatched frequencies for '7:95281362' f[T,C] = [0.978101,0.02189898] vs [0.9979,0.0021], chisq 390.1413
## Mismatched frequencies for '7:97422926' f[G,T] = [0.9435742,0.05642583] vs [0.8553,0.1447], chisq 360.3579
## Mismatched frequencies for '7:98418502' f[G,A] = [0.9701087,0.0298913] vs [0.9974,0.0026], chisq 561.3544
## Mismatched frequencies for '7:99818000' f[G,A] = [0.8009911,0.199009] vs [0.9998,2e-04], chisq 6629.623
## Mismatched frequencies for '7:99995536' f[G,C] = [0.0001598465,0.9998401] vs [0.9982,0.0018], chisq 38291.11
## Mismatched frequencies for '7:107711792' f[A,C] = [0.9215153,0.07848465] vs [0.9936,0.0064], chisq 1538.208
## Mismatched frequencies for '7:113506271' f[G,T] = [0.9274297,0.07257033] vs [0.9921,0.0079], chisq 1218.034
## Mismatched frequencies for '7:132712123' f[A,G] = [0.8499041,0.1500959] vs [0.9788,0.0212], chisq 2164.798
## Mismatched frequencies for '7:138645488' f[A,G] = [0.6150895,0.3849105] vs [0.8505,0.1495], chisq 1907.879
## Mismatched frequencies for '7:142499071' f[T,C] = [0.7878836,0.2121164] vs [0.5141,0.4859], chisq 1594.418
## Mismatched frequencies for '7:144622069' f[G,T] = [0.7149936,0.2850064] vs [0.9733,0.0267], chisq 5490.292
## Mismatched frequencies for '7:151882672' f[C,A] = [0.971867,0.02813299] vs [0.9989,0.0011], chisq 705.0053
## Mismatched frequencies for '7:154406474' f[G,A] = [0.08935422,0.9106458] vs [0.5454,0.4546], chisq 4377.68
## Mismatched frequencies for '7:158406614' f[T,C] = [0.9768223,0.02317775] vs [0.9994,6e-04], chisq 632.2233
## Mismatched frequencies for '8:240598' f[T,C] = [0.9387788,0.06122123] vs [0.985,0.015], chisq 510.2538
## Mismatched frequencies for '8:1297437' f[C,T] = [0.3455882,0.6544118] vs [0.5445,0.4555], chisq 830.6595
## Mismatched frequencies for '8:2084184' f[G,A] = [0.9648337,0.03516624] vs [0.9966,0.0034], chisq 625.7407
## Mismatched frequencies for '8:3737590' f[G,A] = [0.8300831,0.1699169] vs [0.9455,0.0545], chisq 1030.667
## Mismatched frequencies for '8:3995772' f[C,T] = [0.6182864,0.3817136] vs [0.7494,0.2506], chisq 455.6073
## Mismatched frequencies for '8:3996474' f[G,T] = [0.6163683,0.3836317] vs [0.7561,0.2439], chisq 523.9587
## Mismatched frequencies for '8:4931765' f[T,C] = [0.9004156,0.0995844] vs [0.9766,0.0234], chisq 884.1857
## Mismatched frequencies for '8:7665972' f[T,C] = [0.02461637,0.9753836] vs [0.5817,0.4183], chisq 6513.234
## Mismatched frequencies for '8:10900732' f[A,G] = [0.8003517,0.1996483] vs [0.9951,0.0049], chisq 5677.768
## Mismatched frequencies for '8:11662548' f[C,T] = [0.0001598465,0.9998401] vs [0.2689,0.7311], chisq 2169.163
## Mismatched frequencies for '8:12692307' f[T,C] = [0.6035805,0.3964194] vs [0.4692,0.5308], chisq 379.0119
## Mismatched frequencies for '8:14504159' f[T,C] = [0.08120205,0.918798] vs [0.008099973,0.9919], chisq 1436.529
## Mismatched frequencies for '8:17895016' f[G,A] = [0.7891624,0.2108376] vs [0.9723,0.0277], chisq 3257.692
## Mismatched frequencies for '8:18515163' f[C,T] = [0.9419757,0.0580243] vs [0.9974,0.0026], chisq 1410.941
## Mismatched frequencies for '8:25275495' f[C,A] = [0.338555,0.661445] vs [0.5042,0.4958], chisq 576.8702
## Mismatched frequencies for '8:34027595' f[C,A] = [0.832321,0.167679] vs [0.9813,0.0187], chisq 2843.817
## Mismatched frequencies for '8:40242357' f[A,G] = [0.7818095,0.2181905] vs [0.9985,0.0015], chisq 7002.463
## Mismatched frequencies for '8:58412971' f[T,C] = [0.973945,0.02605499] vs [0.9986,0.0014], chisq 595.5443
## Mismatched frequencies for '8:62452260' f[T,G] = [0.8757992,0.1242008] vs [0.9884,0.0116], chisq 2301.024
## Mismatched frequencies for '8:63750710' f[G,A] = [0.9029732,0.09702685] vs [0.9933,0.0067], chisq 2053.729
## Mismatched frequencies for '8:77030281' f[G,T] = [0.9403772,0.05962276] vs [0.9903,0.0097], chisq 749.2007
## Mismatched frequencies for '8:97235025' f[C,T] = [0.4886509,0.5113491] vs [0.7334,0.2666], chisq 1479.204
## Mismatched frequencies for '8:104112609' f[G,A] = [0.6170077,0.3829923] vs [0.7394,0.2606], chisq 389.4415
## Mismatched frequencies for '8:105732263' f[G,T] = [0.7792519,0.2207481] vs [0.8838,0.1162], chisq 496.9254
## Mismatched frequencies for '8:107846295' f[C,T] = [0.4283887,0.5716112] vs [0.2101,0.7899], chisq 1349.868
## Mismatched frequencies for '8:110234720' f[G,A] = [0.5915921,0.4084079] vs [0.9986,0.0014], chisq 13871.49
## Mismatched frequencies for '8:116236717' f[G,C] = [0.909367,0.09063299] vs [0.9844,0.0156], chisq 1095.665
## Mismatched frequencies for '8:118803157' f[A,C] = [0.5375639,0.462436] vs [0.7579,0.2421], chisq 1269.579
## Mismatched frequencies for '8:119421632' f[G,A] = [0.6317136,0.3682864] vs [0.7769,0.2231], chisq 595.2016
## Mismatched frequencies for '8:120188522' f[T,G] = [0.4948849,0.5051151] vs [0.6716,0.3284], chisq 713.6297
## Mismatched frequencies for '8:122684192' f[A,G] = [0.6694374,0.3305627] vs [0.9946,0.0054], chisq 10162.53
## Mismatched frequencies for '8:123374415' f[C,A] = [0.9347826,0.06521739] vs [0.9998,2e-04], chisq 2094.08
## Mismatched frequencies for '8:144153002' f[T,C] = [0.8988171,0.1011829] vs [0.9614,0.0386], chisq 443.36
## Mismatched frequencies for '9:791905' f[T,C] = [0.9211956,0.07880435] vs [0.985,0.015], chisq 865.6925
## Mismatched frequencies for '9:6686815' f[G,A] = [0.7771739,0.2228261] vs [0.9041,0.0959], chisq 821.5908
## Mismatched frequencies for '9:8922146' f[A,T] = [0.9996803,0.0003196931] vs [0.9526,0.0474], chisq 304.2767
## Mismatched frequencies for '9:9139214' f[G,C] = [0.9694693,0.03053069] vs [0.9985,0.0015], chisq 718.643
## Mismatched frequencies for '9:13981001' f[G,A] = [0.9004156,0.0995844] vs [0.9685,0.0315], chisq 597.5256
## Mismatched frequencies for '9:21924725' f[T,C] = [0.9530051,0.04699488] vs [0.9967,0.0033], chisq 976.91
## Mismatched frequencies for '9:25564158' f[T,G] = [0.9592391,0.04076087] vs [0.9992,8e-04], chisq 1162.899
## Mismatched frequencies for '9:25821776' f[G,T] = [0.9998401,0.0001598465] vs [0.9528,0.0472], chisq 305.1808
## Mismatched frequencies for '9:25919001' f[A,G] = [0.8216112,0.1783887] vs [0.9954,0.0046], chisq 5012.276
## Mismatched frequencies for '9:28990272' f[A,G] = [0.9998401,0.0001598465] vs [0.8863,0.1137], chisq 783.8644
## Mismatched frequencies for '9:33779649' f[G,A] = [0.9998401,0.0001598465] vs [0.9239,0.0761], chisq 506.204
## Mismatched frequencies for '9:33832604' f[C,T] = [0.9998401,0.0001598465] vs [0.7489,0.2511], chisq 1987.097
## Mismatched frequencies for '9:79383541' f[A,G] = [0.9088875,0.09111253] vs [0.9941,0.0059], chisq 1975.605
## Mismatched frequencies for '9:82968487' f[T,C] = [0.8088235,0.1911765] vs [0.96,0.04], chisq 1988.986
## Mismatched frequencies for '9:85206817' f[C,T] = [0.7095588,0.2904412] vs [0.8615,0.1385], chisq 887.395
## Mismatched frequencies for '9:94629940' f[G,C] = [0.7714195,0.2285806] vs [0.9636,0.0364], chisq 3080.108
## Mismatched frequencies for '9:98149355' f[T,A] = [0.6855819,0.3144182] vs [0.9984,0.0016], chisq 10387
## Mismatched frequencies for '9:112526619' f[C,T] = [0.8212916,0.1787084] vs [0.9965,0.0035], chisq 5229.261
## Mismatched frequencies for '9:113190709' f[C,A] = [0.6731138,0.3268862] vs [0.7859,0.2141], chisq 374.1289
## Mismatched frequencies for '9:122045518' f[T,C] = [0.7309783,0.2690218] vs [0.8436,0.1564], chisq 461.6629
## Mismatched frequencies for '9:124855337' f[C,T] = [0.7571931,0.2428069] vs [0.9899,0.0101], chisq 6254.117
## Mismatched frequencies for '9:136350150' f[T,C] = [0.276055,0.723945] vs [0.1719,0.8281], chisq 371.6533
## Mismatched frequencies for '9:137398007' f[C,T] = [0.9183184,0.08168159] vs [0.9873,0.0127], chisq 1072.385
## Mismatched frequencies for '9:137568051' f[C,T] = [0.9630755,0.03692455] vs [0.848,0.152], chisq 600.813
## Mismatched frequencies for '9:138305834' f[T,G] = [0.7920396,0.2079603] vs [0.9971,0.0029], chisq 6351.151
## Mismatched frequencies for '9:140918181' f[A,G] = [0.8273658,0.1726343] vs [0.954,0.046], chisq 1355.823
## Mismatched frequencies for 'X:177061' f[C,G] = [0.917679,0.08232097] vs [0.8232,0.1768], chisq 345.6929
## Mismatched frequencies for 'X:180351' f[A,G] = [0.9122443,0.08775576] vs [0.8051,0.1949], chisq 412.2918
## Mismatched frequencies for 'X:331641' f[C,T] = [0.8757992,0.1242008] vs [0.779,0.221], chisq 301.1827
## Mismatched frequencies for 'X:428737' f[C,G] = [0.9109655,0.08903453] vs [0.819,0.181], chisq 320.2222
## Mismatched frequencies for 'X:429337' f[T,C] = [0.7945972,0.2054028] vs [0.6635,0.3365], chisq 417.5635
## Mismatched frequencies for 'X:429798' f[T,C] = [0.8067455,0.1932545] vs [0.6883,0.3117], chisq 355.5528
## Mismatched frequencies for 'X:431933' f[G,C] = [0.8953005,0.1046995] vs [0.7988,0.2012], chisq 323.1472
## Mismatched frequencies for 'X:431959' f[C,G] = [0.9164003,0.08359975] vs [0.826,0.174], chisq 319.9236
## Mismatched frequencies for 'X:438891' f[C,T] = [0.2338555,0.7661445] vs [0.3634,0.6366], chisq 390.9079
## Mismatched frequencies for 'X:460959' f[G,T] = [0.1393862,0.8606138] vs [0.2439,0.7561], chisq 326.5099
## Mismatched frequencies for 'X:469357' f[A,G] = [0.7758951,0.2241049] vs [0.6441,0.3559], chisq 409.2234
## Mismatched frequencies for 'X:556445' f[C,A] = [0.7183504,0.2816496] vs [0.6015,0.3985], chisq 304.1082
## Mismatched frequencies for 'X:616422' f[C,T] = [0.329124,0.670876] vs [0.4571,0.5429], chisq 349.2781
## Mismatched frequencies for 'X:616543' f[C,T] = [0.155211,0.844789] vs [0.2601,0.7399], chisq 313.5778
## Mismatched frequencies for 'X:621743' f[A,G] = [0.3463875,0.6536125] vs [0.4673,0.5327], chisq 310.1305
## Mismatched frequencies for 'X:624603' f[T,C] = [0.1379476,0.8620524] vs [0.253,0.747], chisq 386.8929
## Mismatched frequencies for 'X:785058' f[A,G] = [0.4256714,0.5743287] vs [0.5603,0.4397], chisq 382.5611
## Mismatched frequencies for 'X:792746' f[C,A] = [0.3184143,0.6815857] vs [0.4406,0.5594], chisq 321.2885
## Mismatched frequencies for 'X:844761' f[G,A] = [0.3558184,0.6441816] vs [0.4923,0.5077], chisq 392.2151
## Mismatched frequencies for 'X:850332' f[G,C] = [0.8524616,0.1475384] vs [0.7079,0.2921], chisq 557.791
## Mismatched frequencies for 'X:851126' f[C,G] = [0.8654092,0.1345908] vs [0.7437,0.2563], chisq 430.1378
## Mismatched frequencies for 'X:863980' f[T,C] = [0.8195332,0.1804668] vs [0.6726,0.3274], chisq 535.5557
## Mismatched frequencies for 'X:877929' f[T,C] = [0.60422,0.3957801] vs [0.4764,0.5236], chisq 342.8062
## Mismatched frequencies for 'X:889154' f[A,G] = [0.9195972,0.08040281] vs [0.8251,0.1749], chisq 349.1558
## Mismatched frequencies for 'X:898402' f[C,A] = [0.2439258,0.7560742] vs [0.361,0.639], chisq 319.443
## Mismatched frequencies for 'X:909617' f[G,T] = [0.4160806,0.5839195] vs [0.549,0.451], chisq 371.8192
## Mismatched frequencies for 'X:920485' f[G,C] = [0.6994885,0.3005115] vs [0.5797,0.4203], chisq 313.3674
## Mismatched frequencies for 'X:945374' f[C,T] = [0.2602302,0.7397698] vs [0.3905,0.6095], chisq 382.108
## Mismatched frequencies for 'X:971167' f[G,A] = [0.2348146,0.7651854] vs [0.3529,0.6471], chisq 328.8991
## Mismatched frequencies for 'X:990180' f[C,G] = [0.2480818,0.7519181] vs [0.3674,0.6326], chisq 329.0713
## Mismatched frequencies for 'X:994974' f[T,C] = [0.1492967,0.8507033] vs [0.2523,0.7477], chisq 308.9628
## Mismatched frequencies for 'X:996011' f[G,C] = [0.327046,0.672954] vs [0.4671,0.5329], chisq 416.6932
## Mismatched frequencies for 'X:1018822' f[A,G] = [0.1799872,0.8200128] vs [0.3334,0.6666], chisq 578.5769
## Mismatched frequencies for 'X:1025339' f[C,T] = [0.1863811,0.8136189] vs [0.2933,0.7067], chisq 300.0618
## Mismatched frequencies for 'X:1029793' f[G,T] = [0.8375959,0.1624041] vs [0.7217,0.2783], chisq 366.5775
## Mismatched frequencies for 'X:1033466' f[G,C] = [0.2921995,0.7078005] vs [0.4373,0.5627], chisq 455.2602
## Mismatched frequencies for 'X:1210318' f[A,G] = [0.8276854,0.1723146] vs [0.6838,0.3162], chisq 524.2774
## Mismatched frequencies for 'X:1216144' f[T,C] = [0.7910805,0.2089194] vs [0.6543,0.3457], chisq 448.3431
## Mismatched frequencies for 'X:1223309' f[G,A] = [0.9296675,0.07033248] vs [0.8462,0.1538], chisq 302.9457
## Mismatched frequencies for 'X:1322594' f[C,A] = [0.6576087,0.3423913] vs [0.5151,0.4849], chisq 428.5989
## Mismatched frequencies for 'X:1341625' f[A,C] = [0.8070652,0.1929348] vs [0.6663,0.3337], chisq 485.0853
## Mismatched frequencies for 'X:1383713' f[A,C] = [0.4717072,0.5282928] vs [0.603,0.397], chisq 371.6189
## Mismatched frequencies for 'X:1429155' f[T,C] = [0.8142583,0.1857417] vs [0.6546,0.3454], chisq 614.869
## Mismatched frequencies for 'X:1443817' f[C,T] = [0.8280051,0.1719949] vs [0.7175,0.2825], chisq 329.1371
## Mismatched frequencies for 'X:1502582' f[C,T] = [0.5696931,0.4303069] vs [0.4256,0.5744], chisq 440.2372
## Mismatched frequencies for 'X:1506113' f[T,C] = [0.569853,0.430147] vs [0.4223,0.5777], chisq 462.17
## Mismatched frequencies for 'X:1541127' f[C,T] = [0.1859015,0.8140985] vs [0.3299,0.6701], chisq 511.5716
## Mismatched frequencies for 'X:1723199' f[A,G] = [0.7413683,0.2586317] vs [0.6228,0.3772], chisq 320.827
## Mismatched frequencies for 'X:1725002' f[G,A] = [0.9042519,0.09574808] vs [0.811,0.189], chisq 317.4604
## Mismatched frequencies for 'X:1778102' f[T,C] = [0.2434463,0.7565537] vs [0.3682,0.6318], chisq 359.7737
## Mismatched frequencies for 'X:1842180' f[G,C] = [0.193734,0.806266] vs [0.3076,0.6924], chisq 330.8369
## Mismatched frequencies for 'X:1901869' f[T,C] = [0.730179,0.269821] vs [0.5912,0.4088], chisq 427.3403
## Mismatched frequencies for 'X:1905447' f[T,C] = [0.7944374,0.2055627] vs [0.6695,0.3305], chisq 382.5656
## Mismatched frequencies for 'X:1922771' f[A,G] = [0.7113171,0.2886829] vs [0.5793,0.4207], chisq 381.1127
## Mismatched frequencies for 'X:2001644' f[C,T] = [0.8773977,0.1226023] vs [0.7791,0.2209], chisq 310.9638
## Mismatched frequencies for 'X:2007474' f[T,C] = [0.7766944,0.2233056] vs [0.6645,0.3355], chisq 304.7637
## Mismatched frequencies for 'X:2128985' f[G,A] = [0.8238491,0.1761509] vs [0.6939,0.3061], chisq 434.5841
## Mismatched frequencies for 'X:2139186' f[C,T] = [0.8238491,0.1761509] vs [0.6951,0.3049], chisq 427.5039
## Mismatched frequencies for 'X:2139597' f[A,G] = [0.8179348,0.1820652] vs [0.6787,0.3213], chisq 485.3369
## Mismatched frequencies for 'X:2161129' f[C,G] = [0.1766304,0.8233696] vs [0.3004,0.6996], chisq 398.2261
## Mismatched frequencies for 'X:2179473' f[T,C] = [0.1721547,0.8278453] vs [0.2962,0.7038], chisq 403.7683
## Mismatched frequencies for 'X:2180908' f[A,G] = [0.172954,0.827046] vs [0.2998,0.7002], chisq 419.2725
## Mismatched frequencies for 'X:2275900' f[C,T] = [0.8147379,0.1852621] vs [0.6826,0.3174], chisq 439.4614
## Mismatched frequencies for 'X:2289063' f[T,G] = [0.4199169,0.5800831] vs [0.5671,0.4329], chisq 457.9575
## Mismatched frequencies for 'X:2362324' f[C,T] = [0.9092072,0.09079284] vs [0.8118,0.1882], chisq 348.7162
## Mismatched frequencies for 'X:2392272' f[C,T] = [0.8903453,0.1096547] vs [0.9651,0.0349], chisq 654.744
## Mismatched frequencies for 'X:2565049' f[A,C] = [0.1023018,0.8976982] vs [0.202,0.798], chisq 344.5121
## Mismatched frequencies for 'X:2566750' f[T,C] = [0.2819693,0.7180307] vs [0.4231,0.5769], chisq 435.2104
## Mismatched frequencies for 'X:2568204' f[C,A] = [0.7101982,0.2898018] vs [0.5612,0.4388], chisq 479.7519
## Mismatched frequencies for 'X:2571054' f[T,G] = [0.9034527,0.09654731] vs [0.7952,0.2048], chisq 403.7976
## Mismatched frequencies for 'X:2571725' f[C,T] = [0.4812979,0.518702] vs [0.6497,0.3503], chisq 633.0131
## Mismatched frequencies for 'X:2571752' f[C,T] = [0.9282289,0.0717711] vs [0.8344,0.1656], chisq 361.3155
## Mismatched frequencies for 'X:2576541' f[T,G] = [0.4050511,0.5949488] vs [0.5313,0.4687], chisq 334.5784
## Mismatched frequencies for 'X:2585794' f[C,G] = [0.8030691,0.1969309] vs [0.6942,0.3058], chisq 303.0552
## Mismatched frequencies for 'X:2589457' f[A,G] = [0.163523,0.836477] vs [0.2829,0.7171], chisq 385.0722
## Mismatched frequencies for 'X:2590115' f[C,T] = [0.05258951,0.9474105] vs [0.1302,0.8698], chisq 304.3301
## Mismatched frequencies for 'X:2594011' f[C,A] = [0.1668798,0.8331202] vs [0.3013,0.6987], chisq 470.5532
## Mismatched frequencies for 'X:2609983' f[T,C] = [0.2615089,0.7384911] vs [0.3779,0.6221], chisq 308.753
## Mismatched frequencies for 'X:2637230' f[T,C] = [0.1694373,0.8305626] vs [0.2772,0.7228], chisq 316.7626
## Mismatched frequencies for 'X:2697154' f[A,C] = [0.9528453,0.04715473] vs [0.7625,0.2375], chisq 1158.788
## Mismatched frequencies for 'X:2698954' f[G,A] = [0.8431905,0.1568095] vs [0.6701,0.3299], chisq 745.6092
## Mismatched frequencies for 'X:154950587' f[T,C] = [0.8027493,0.1972506] vs [0.6471,0.3529], chisq 576.7582
## Mismatched frequencies for 'X:154983133' f[C,T] = [0.7217072,0.2782928] vs [0.5878,0.4122], chisq 395.1501
## Mismatched frequencies for 'X:154987147' f[T,C] = [0.8737212,0.1262788] vs [0.7447,0.2553], chisq 486.4806
## Mismatched frequencies for 'X:155195547' f[C,T] = [0.5861573,0.4138427] vs [0.7137,0.2863], chisq 401.1361
## Mismatched frequencies for 'X:2703633' f[A,G] = [0.2995299,0.7004701] vs [0.5,0.5], chisq 439.003
## Mismatched frequencies for 'X:2711722' f[C,T] = [0.340497,0.659503] vs [0.5347,0.4653], chisq 412.0737
## Mismatched frequencies for 'X:2721788' f[A,G] = [0.356951,0.643049] vs [0.5521,0.4479], chisq 417.6653
## Mismatched frequencies for 'X:2724760' f[T,C] = [0.001007387,0.9989926] vs [0.2854,0.7146], chisq 1142.407
## Mismatched frequencies for 'X:2733210' f[G,A] = [0.2041639,0.7958361] vs [0.4337,0.5663], chisq 592.2316
## Mismatched frequencies for 'X:2743627' f[C,A] = [0.06245803,0.937542] vs [0.3389,0.6611], chisq 964.9836
## Mismatched frequencies for 'X:2744765' f[C,T] = [0.2424446,0.7575554] vs [0.4746,0.5254], chisq 592.8568
## Mismatched frequencies for 'X:2749521' f[T,C] = [0.1554735,0.8445265] vs [0.4082,0.5918], chisq 734.4439
## Mismatched frequencies for 'X:2776686' f[G,T] = [0.4345198,0.5654802] vs [0.5983,0.4017], chisq 301.297
## Mismatched frequencies for 'X:2777985' f[C,T] = [0.2588986,0.7411014] vs [0.4772,0.5228], chisq 523.5261
## Mismatched frequencies for 'X:2779570' f[A,G] = [0.2800537,0.7199463] vs [0.4936,0.5064], chisq 498.7578
## Mismatched frequencies for 'X:2780747' f[C,T] = [0.2800537,0.7199463] vs [0.4927,0.5073], chisq 494.6434
## Mismatched frequencies for 'X:2783555' f[T,G] = [0.3032236,0.6967763] vs [0.5029,0.4971], chisq 435.3746
## Mismatched frequencies for 'X:2789848' f[T,G] = [0.1712559,0.8287441] vs [0.4135,0.5865], chisq 670.9382
## Mismatched frequencies for 'X:2791081' f[T,C] = [0.2585628,0.7414372] vs [0.4703,0.5297], chisq 493.6339
## Mismatched frequencies for 'X:2800295' f[G,C] = [0.0809268,0.9190732] vs [0.352,0.648], chisq 907.6478
## Mismatched frequencies for 'X:2849981' f[C,T] = [0.2918066,0.7081934] vs [0.5036,0.4964], chisq 489.8355
## Mismatched frequencies for 'X:2850901' f[A,G] = [0.3468771,0.6531229] vs [0.5231,0.4769], chisq 338.9374
## Mismatched frequencies for 'X:2856155' f[C,T] = [0.3327737,0.6672263] vs [0.5257,0.4743], chisq 406.27
## Mismatched frequencies for 'X:2928555' f[T,C] = [0.2125588,0.7874412] vs [0.4308,0.5692], chisq 536.1273
## Mismatched frequencies for 'X:2931592' f[C,T] = [0.3566152,0.6433848] vs [0.5279,0.4721], chisq 320.354
## Mismatched frequencies for 'X:2934940' f[G,A] = [0.04096709,0.9590329] vs [0.3024,0.6976], chisq 923.9143
## Mismatched frequencies for 'X:2953505' f[T,C] = [0.3492277,0.6507723] vs [0.5273,0.4727], chisq 346.2045
## Mismatched frequencies for 'X:2967137' f[G,A] = [0.258227,0.741773] vs [0.4563,0.5437], chisq 434.4075
## Mismatched frequencies for 'X:3002687' f[A,G] = [0.3495635,0.6504365] vs [0.5246,0.4754], chisq 334.4282
## Mismatched frequencies for 'X:3041617' f[A,G] = [0.38818,0.61182] vs [0.5877,0.4123], chisq 443.2812
## Mismatched frequencies for 'X:3108751' f[A,G] = [0.1175285,0.8824714] vs [0.3549,0.6451], chisq 689.9738
## Mismatched frequencies for 'X:3214176' f[C,A] = [0.3546004,0.6453996] vs [0.5223,0.4777], chisq 306.9421
## Mismatched frequencies for 'X:3217180' f[G,A] = [0.3542646,0.6457354] vs [0.5213,0.4787], chisq 304.4976
## Mismatched frequencies for 'X:3228653' f[G,C] = [0.4237743,0.5762256] vs [0.6748,0.3252], chisq 759.3241
## Mismatched frequencies for 'X:3238733' f[G,A] = [0.4207522,0.5792478] vs [0.5914,0.4086], chisq 325.4753
## Mismatched frequencies for 'X:3240343' f[G,A] = [0.4204164,0.5795836] vs [0.5854,0.4146], chisq 303.2074
## Mismatched frequencies for 'X:3274582' f[T,C] = [0.434184,0.565816] vs [0.6041,0.3959], chisq 325.5303
## Mismatched frequencies for 'X:3307365' f[C,T] = [0.304231,0.695769] vs [0.4826,0.5174], chisq 348.6097
## Mismatched frequencies for 'X:3325021' f[C,T] = [0.3928811,0.6071188] vs [0.5614,0.4386], chisq 312.6561
## Mismatched frequencies for 'X:3352828' f[A,G] = [0.04734721,0.9526528] vs [0.3132,0.6868], chisq 934.7097
## Mismatched frequencies for 'X:3366261' f[C,T] = [0.2108798,0.7891202] vs [0.4266,0.5734], chisq 525.3606
## Mismatched frequencies for 'X:3421519' f[C,T] = [0.01678979,0.9832102] vs [0.2926,0.7074], chisq 1054.215
## Mismatched frequencies for 'X:3441920' f[T,C] = [0.3331095,0.6668905] vs [0.5322,0.4678], chisq 432.905
## Mismatched frequencies for 'X:3461241' f[A,G] = [0.4563465,0.5436535] vs [0.6216,0.3784], chisq 312.4752
## Mismatched frequencies for 'X:3517936' f[A,G] = [0.2881128,0.7118872] vs [0.4905,0.5095], chisq 448.1908
## Mismatched frequencies for 'X:3524309' f[T,C] = [0.3015447,0.6984553] vs [0.4864,0.5136], chisq 374.1242
## Mismatched frequencies for 'X:3529969' f[A,G] = [0.389859,0.610141] vs [0.557,0.443], chisq 307.0855
## Mismatched frequencies for 'X:3579857' f[A,G] = [0.2222968,0.7777032] vs [0.4376,0.5624], chisq 519.2522
## Mismatched frequencies for 'X:3592847' f[C,T] = [0.1040967,0.8959033] vs [0.3539,0.6461], chisq 766.4746
## Mismatched frequencies for 'X:3608067' f[T,C] = [0.2985225,0.7014775] vs [0.5007,0.4993], chisq 446.4798
## Mismatched frequencies for 'X:3665636' f[A,G] = [0.3764271,0.6235729] vs [0.556,0.444], chisq 354.2211
## Mismatched frequencies for 'X:3667552' f[A,G] = [0.3858294,0.6141706] vs [0.5624,0.4376], chisq 343.2893
## Mismatched frequencies for 'X:3689052' f[T,C] = [0.2531901,0.74681] vs [0.4547,0.5453], chisq 450.0367
## Mismatched frequencies for 'X:3707987' f[A,C] = [0.1826729,0.8173271] vs [0.4126,0.5874], chisq 604.3712
## Mismatched frequencies for 'X:3722454' f[A,G] = [0.4016118,0.5983882] vs [0.5795,0.4205], chisq 351.1316
## Mismatched frequencies for 'X:3736489' f[C,T] = [0.3122901,0.6877099] vs [0.5182,0.4818], chisq 462.6271
## Mismatched frequencies for 'X:3739077' f[A,G] = [0.3750839,0.6249161] vs [0.5662,0.4338], chisq 402.587
## Mismatched frequencies for 'X:3870419' f[T,C] = [0.0721961,0.9278039] vs [0.319,0.681], chisq 793.8585
## Mismatched frequencies for 'X:4009487' f[A,G] = [0.1020819,0.8979181] vs [0.3446,0.6554], chisq 732.2413
## Mismatched frequencies for 'X:4020730' f[G,A] = [0.02552048,0.9744795] vs [0.2948,0.7052], chisq 998.4905
## Mismatched frequencies for 'X:4041291' f[G,A] = [0.2008059,0.7991941] vs [0.4183,0.5817], chisq 537.6363
## Mismatched frequencies for 'X:4048854' f[G,T] = [0.1108126,0.8891874] vs [0.3605,0.6395], chisq 758.3698
## Mismatched frequencies for 'X:4111484' f[C,T] = [0.3656817,0.6343184] vs [0.5682,0.4318], chisq 452.2509
## Mismatched frequencies for 'X:4117724' f[G,A] = [0.3663532,0.6336467] vs [0.5683,0.4317], chisq 449.7292
## Mismatched frequencies for 'X:4135974' f[A,C] = [0.0238415,0.9761585] vs [0.2946,0.7054], chisq 1010.243
## Mismatched frequencies for 'X:4158985' f[T,G] = [0.4674278,0.5325722] vs [0.6305,0.3695], chisq 306.9059
## Mismatched frequencies for 'X:4160211' f[A,G] = [0.4660846,0.5339154] vs [0.6343,0.3657], chisq 327.6769
## Mismatched frequencies for 'X:4385969' f[G,T] = [0.1286098,0.8713902] vs [0.3667,0.6333], chisq 682.7048
## Mismatched frequencies for 'X:4502412' f[G,A] = [0.5255205,0.4744795] vs [0.6827,0.3173], chisq 304.5664
## Mismatched frequencies for 'X:4526525' f[T,C] = [0.04163868,0.9583613] vs [0.3045,0.6955], chisq 930.0486
## Mismatched frequencies for 'X:4618823' f[A,G] = [0.2065144,0.7934856] vs [0.4318,0.5682], chisq 571.1277
## Mismatched frequencies for 'X:4712340' f[C,A] = [0.3801209,0.6198791] vs [0.5503,0.4497], chisq 317.6475
## Mismatched frequencies for 'X:4730780' f[A,G] = [0.2380792,0.7619208] vs [0.4273,0.5727], chisq 403.336
## Mismatched frequencies for 'X:4899267' f[C,T] = [0.3344527,0.6655474] vs [0.5426,0.4574], chisq 473.9299
## Mismatched frequencies for 'X:4971902' f[G,A] = [0.0886501,0.9113499] vs [0.334,0.666], chisq 763.1206
## Mismatched frequencies for 'X:5071560' f[A,C] = [0.04197448,0.9580255] vs [0.3048,0.6952], chisq 929.1911
## Mismatched frequencies for 'X:5096158' f[G,A] = [0.0402955,0.9597045] vs [0.3035,0.6965], chisq 934.5483
## Mismatched frequencies for 'X:5117394' f[C,T] = [0.1269308,0.8730692] vs [0.3724,0.6276], chisq 720.8031
## Mismatched frequencies for 'X:5153366' f[T,G] = [0.3428476,0.6571525] vs [0.5421,0.4579], chisq 434.3115
## Mismatched frequencies for 'X:5366090' f[G,A] = [0.08697112,0.9130289] vs [0.3269,0.6731], chisq 738.4328
## Mismatched frequencies for 'X:5469735' f[C,A] = [0.384822,0.615178] vs [0.5516,0.4484], chisq 305.2208
## Mismatched frequencies for 'X:5493643' f[A,G] = [0.3106112,0.6893889] vs [0.5005,0.4995], chisq 393.8121
## Mismatched frequencies for 'X:5494102' f[C,T] = [0.3106112,0.6893889] vs [0.5006,0.4994], chisq 394.2226
## Mismatched frequencies for 'X:5514581' f[A,C] = [0.2864338,0.7135661] vs [0.4909,0.5091], chisq 457.4242
## Mismatched frequencies for 'X:5602358' f[C,T] = [0.324043,0.675957] vs [0.5056,0.4944], chisq 359.8017
## Mismatched frequencies for 'X:5663901' f[T,C] = [0.2733378,0.7266622] vs [0.4725,0.5275], chisq 436.2156
## Mismatched frequencies for 'X:5664762' f[A,C] = [0.273002,0.726998] vs [0.4771,0.5229], chisq 457.4542
## Mismatched frequencies for 'X:5679429' f[A,G] = [0.3294157,0.6705843] vs [0.516,0.484], chisq 379.8618
## Mismatched frequencies for 'X:5740117' f[G,T] = [0.3287441,0.6712559] vs [0.5107,0.4893], chisq 361.28
## Mismatched frequencies for 'X:5758732' f[T,C] = [0.148086,0.851914] vs [0.376,0.624], chisq 617.3875
## Mismatched frequencies for 'X:5777815' f[T,C] = [0.1544661,0.8455339] vs [0.385,0.615], chisq 625.0273
## Mismatched frequencies for 'X:5895939' f[A,G] = [0.2081934,0.7918066] vs [0.4295,0.5705], chisq 551.92
## Mismatched frequencies for 'X:5931577' f[G,A] = [0.6091337,0.3908663] vs [0.9675,0.0325], chisq 5969.368
## Mismatched frequencies for 'X:5986250' f[T,C] = [0.05876427,0.9412357] vs [0.3188,0.6812], chisq 883.503
## Mismatched frequencies for 'X:6001798' f[T,C] = [0.5090665,0.4909335] vs [0.6672,0.3328], chisq 301.411
## Mismatched frequencies for 'X:6052481' f[T,C] = [0.3418402,0.6581598] vs [0.5412,0.4588], chisq 434.7009
## Mismatched frequencies for 'X:6118424' f[C,T] = [0.3381464,0.6618536] vs [0.536,0.464], chisq 427.7756
## Mismatched frequencies for 'X:6128317' f[A,G] = [0.6803223,0.3196776] vs [0.8521,0.1479], chisq 591.9355
## Mismatched frequencies for 'X:6184334' f[C,T] = [0.05406313,0.9459369] vs [0.3171,0.6829], chisq 907.4767
## Mismatched frequencies for 'X:6224563' f[T,G] = [0.007051712,0.9929483] vs [0.2845,0.7155], chisq 1088.149
## Mismatched frequencies for 'X:6248920' f[C,T] = [0.3794493,0.6205507] vs [0.5503,0.4497], chisq 320.1543
## Mismatched frequencies for 'X:6418059' f[G,A] = [0.2491605,0.7508395] vs [0.4682,0.5318], chisq 528.8353
## Mismatched frequencies for 'X:6564943' f[A,G] = [0.02518469,0.9748153] vs [0.2998,0.7002], chisq 1027.8
## Mismatched frequencies for 'X:6651690' f[A,G] = [0.5097381,0.4902619] vs [0.6723,0.3277], chisq 320.6226
## Mismatched frequencies for 'X:6667557' f[G,A] = [0.3781061,0.6218939] vs [0.5528,0.4472], chisq 334.9368
## Mismatched frequencies for 'X:6669882' f[T,C] = [0.3425117,0.6574882] vs [0.5482,0.4518], chisq 463.4024
## Mismatched frequencies for 'X:6670409' f[C,G] = [0.06615178,0.9338482] vs [0.3284,0.6716], chisq 882.8106
## Mismatched frequencies for 'X:6682244' f[A,G] = [0.05137676,0.9486232] vs [0.3162,0.6838], chisq 921.7576
## Mismatched frequencies for 'X:6692559' f[A,G] = [0.4049698,0.5950302] vs [0.6039,0.3961], chisq 445.3353
## Mismatched frequencies for 'X:6696168' f[G,A] = [0.2951645,0.7048355] vs [0.5221,0.4779], chisq 561.9477
## Mismatched frequencies for 'X:6710327' f[T,C] = [0.0725319,0.9274681] vs [0.3367,0.6633], chisq 882.9632
## Mismatched frequencies for 'X:6715267' f[A,G] = [0.3828072,0.6171927] vs [0.5768,0.4232], chisq 416.7276
## Mismatched frequencies for 'X:6865519' f[C,A] = [0.3542646,0.6457354] vs [0.5324,0.4676], chisq 346.6603
## Mismatched frequencies for 'X:6882880' f[A,G] = [0.353593,0.646407] vs [0.534,0.466], chisq 355.6308
## Mismatched frequencies for 'X:6975782' f[C,G] = [0.389859,0.610141] vs [0.5862,0.4138], chisq 428.9643
## Mismatched frequencies for 'X:7027737' f[C,A] = [0.3885158,0.6114842] vs [0.5862,0.4138], chisq 434.8256
## Mismatched frequencies for 'X:7146353' f[G,A] = [0.4086635,0.5913365] vs [0.5889,0.4111], chisq 362.3394
## Mismatched frequencies for 'X:7214805' f[T,G] = [0.2719946,0.7280053] vs [0.4643,0.5357], chisq 407.9008
## Mismatched frequencies for 'X:7260656' f[T,C] = [0.2934855,0.7065144] vs [0.4814,0.5186], chisq 387.128
## Mismatched frequencies for 'X:7388629' f[G,A] = [0.3562794,0.6437206] vs [0.5495,0.4505], chisq 409.1749
## Mismatched frequencies for 'X:7426907' f[G,A] = [0.2290128,0.7709872] vs [0.4259,0.5741], chisq 437.3431
## Mismatched frequencies for 'X:7786013' f[C,T] = [0.06749497,0.932505] vs [0.3239,0.6761], chisq 850.1844
## Mismatched frequencies for 'X:8039180' f[T,C] = [0.3085964,0.6914036] vs [0.4926,0.5074], chisq 370.2003
## Mismatched frequencies for 'X:8141017' f[T,C] = [0.1725991,0.8274009] vs [0.4002,0.5998], chisq 599.119
## Mismatched frequencies for 'X:8180082' f[G,A] = [0.3401612,0.6598388] vs [0.529,0.471], chisq 389.3657
## Mismatched frequencies for 'X:8328539' f[T,C] = [0.2182673,0.7817327] vs [0.4468,0.5532], chisq 582.0689
## Mismatched frequencies for 'X:8376862' f[C,T] = [0.1564809,0.8435191] vs [0.3877,0.6123], chisq 626.8483
## Mismatched frequencies for 'X:8488346' f[T,G] = [0.2296844,0.7703157] vs [0.4635,0.5365], chisq 604.1335
## Mismatched frequencies for 'X:8491574' f[C,G] = [0.2350571,0.7649429] vs [0.4449,0.5551], chisq 490.8527
## Mismatched frequencies for 'X:8504833' f[C,T] = [0.3341169,0.6658831] vs [0.5327,0.4673], chisq 430.7308
## Mismatched frequencies for 'X:8508062' f[C,T] = [0.258227,0.741773] vs [0.4699,0.5301], chisq 493.4095
## Mismatched frequencies for 'X:8549542' f[G,A] = [0.2860981,0.7139019] vs [0.4765,0.5235], chisq 398.0487
## Mismatched frequencies for 'X:8609515' f[C,T] = [0.04969778,0.9503022] vs [0.3103,0.6897], chisq 902.6809
## Mismatched frequencies for 'X:8819197' f[T,C] = [0.04768301,0.952317] vs [0.3108,0.6892], chisq 919.6394
## Mismatched frequencies for 'X:8882597' f[A,G] = [0.04701142,0.9529886] vs [0.3096,0.6904], chisq 918.1387
## Mismatched frequencies for 'X:8941817' f[A,G] = [0.3596374,0.6403627] vs [0.535,0.465], chisq 336.0962
## Mismatched frequencies for 'X:8957561' f[A,G] = [0.4331766,0.5668234] vs [0.6035,0.3965], chisq 326.9398
## Mismatched frequencies for 'X:8963640' f[A,G] = [0.2162525,0.7837475] vs [0.4356,0.5644], chisq 539.7899
## Mismatched frequencies for 'X:9032753' f[G,T] = [0.007387508,0.9926125] vs [0.284,0.716], chisq 1082.756
## Mismatched frequencies for 'X:9078431' f[T,C] = [0.01846877,0.9815312] vs [0.2893,0.7107], chisq 1023.449
## Mismatched frequencies for 'X:9088190' f[C,T] = [0.3438549,0.656145] vs [0.5249,0.4751], chisq 357.7764
## Mismatched frequencies for 'X:9165588' f[A,G] = [0.3475487,0.6524513] vs [0.5271,0.4729], chisq 351.968
## Mismatched frequencies for 'X:9175020' f[T,G] = [0.2162525,0.7837475] vs [0.427,0.573], chisq 501.1098
## Mismatched frequencies for 'X:9177044' f[T,C] = [0.1642042,0.8357958] vs [0.3918,0.6082], chisq 604.3921
## Mismatched frequencies for 'X:9185874' f[C,T] = [0.1762928,0.8237072] vs [0.394,0.606], chisq 551.2156
## Mismatched frequencies for 'X:9233447' f[A,G] = [0.06514439,0.9348556] vs [0.3309,0.6691], chisq 902.9741
## Mismatched frequencies for 'X:9247999' f[T,G] = [0.2978509,0.7021491] vs [0.5012,0.4988], chisq 451.6459
## Mismatched frequencies for 'X:9256304' f[T,C] = [0.08797851,0.9120215] vs [0.3398,0.6602], chisq 796.7475
## Mismatched frequencies for 'X:9269262' f[C,G] = [0.2068502,0.7931498] vs [0.4283,0.5717], chisq 553.1314
## Mismatched frequencies for 'X:9293751' f[A,G] = [0.2625923,0.7374077] vs [0.4756,0.5244], chisq 498.6369
## Mismatched frequencies for 'X:9328996' f[A,G] = [0.1856951,0.8143049] vs [0.4222,0.5778], chisq 634.5288
## Mismatched frequencies for 'X:9360426' f[T,C] = [0.3085964,0.6914036] vs [0.512,0.488], chisq 451.479
## Mismatched frequencies for 'X:9371882' f[C,A] = [0.4355272,0.5644728] vs [0.6003,0.3997], chisq 305.3723
## Mismatched frequencies for 'X:9387424' f[G,A] = [0.278039,0.721961] vs [0.4855,0.5145], chisq 471.5447
## Mismatched frequencies for 'X:9409852' f[G,A] = [0.2948287,0.7051712] vs [0.477,0.523], chisq 364.243
## Mismatched frequencies for 'X:9428940' f[T,C] = [0.3556078,0.6443922] vs [0.5525,0.4475], chisq 425.1914
## Mismatched frequencies for 'X:9450403' f[C,G] = [0.3804567,0.6195433] vs [0.5655,0.4345], chisq 377.38
## Mismatched frequencies for 'X:9567613' f[A,C] = [0.05842847,0.9415715] vs [0.3158,0.6842], chisq 870.2234
## Mismatched frequencies for 'X:9591146' f[A,G] = [0.3908663,0.6091337] vs [0.587,0.413], chisq 428.2589
## Mismatched frequencies for 'X:9596149' f[G,T] = [0.3955675,0.6044325] vs [0.598,0.402], chisq 459.1808
## Mismatched frequencies for 'X:9605377' f[A,C] = [0.07186031,0.9281397] vs [0.3245,0.6755], chisq 823.9862
## Mismatched frequencies for 'X:9644700' f[G,A] = [0.1380121,0.8619879] vs [0.3688,0.6312], chisq 639.1426
## Mismatched frequencies for 'X:9655927' f[G,A] = [0.1148422,0.8851578] vs [0.3554,0.6446], chisq 708.3784
## Mismatched frequencies for 'X:9668985' f[A,G] = [0.1920752,0.8079248] vs [0.4178,0.5822], chisq 579.6771
## Mismatched frequencies for 'X:9695630' f[T,C] = [0.1178643,0.8821357] vs [0.3564,0.6436], chisq 695.3199
## Mismatched frequencies for 'X:9741101' f[C,T] = [0.2169241,0.7830759] vs [0.4298,0.5702], chisq 510.2935
## Mismatched frequencies for 'X:9743655' f[G,A] = [0.3723976,0.6276024] vs [0.548,0.452], chisq 337.9564
## Mismatched frequencies for 'X:9751474' f[T,C] = [0.3334453,0.6665547] vs [0.554,0.446], chisq 533.4568
## Mismatched frequencies for 'X:9757298' f[G,A] = [0.3888516,0.6111484] vs [0.5681,0.4319], chisq 354.5691
## Mismatched frequencies for 'X:9763942' f[T,C] = [0.04701142,0.9529886] vs [0.3102,0.6898], chisq 921.2903
## Mismatched frequencies for 'X:9766019' f[T,C] = [0.2038281,0.7961719] vs [0.431,0.569], chisq 581.1347
## Mismatched frequencies for 'X:9787331' f[T,C] = [0.271323,0.728677] vs [0.4722,0.5278], chisq 443.8299
## Mismatched frequencies for 'X:9795725' f[C,T] = [0.3055742,0.6944258] vs [0.4907,0.5093], chisq 374.8723
## Mismatched frequencies for 'X:9806794' f[C,A] = [0.3324379,0.6675621] vs [0.5335,0.4665], chisq 441.5858
## Mismatched frequencies for 'X:9814135' f[G,A] = [0.2152451,0.7847549] vs [0.4347,0.5653], chisq 540.6554
## Mismatched frequencies for 'X:9815802' f[G,A] = [0.241773,0.758227] vs [0.4581,0.5419], chisq 518.0977
## Mismatched frequencies for 'X:9825109' f[G,A] = [0.4143721,0.5856279] vs [0.5798,0.4202], chisq 303.8814
## Mismatched frequencies for 'X:9830445' f[G,T] = [0.3280725,0.6719274] vs [0.5197,0.4803], chisq 400.6944
## Mismatched frequencies for 'X:9836119' f[T,C] = [0.205507,0.794493] vs [0.4301,0.5699], chisq 568.2985
## Mismatched frequencies for 'X:9867511' f[C,T] = [0.3317663,0.6682337] vs [0.5245,0.4755], chisq 405.4251
## Mismatched frequencies for 'X:9942915' f[T,C] = [0.4200806,0.5799194] vs [0.5998,0.4002], chisq 362.8362
## Mismatched frequencies for 'X:9945032' f[A,G] = [0.01981195,0.9801881] vs [0.2931,0.7069], chisq 1033.302
## Mismatched frequencies for 'X:9948824' f[A,G] = [0.3985897,0.6014103] vs [0.5766,0.4234], chisq 351.0895
## Mismatched frequencies for 'X:10001651' f[A,G] = [0.02518469,0.9748153] vs [0.2959,0.7041], chisq 1006.903
## Mismatched frequencies for 'X:10054942' f[T,C] = [0.3049026,0.6950974] vs [0.4992,0.5008], chisq 412.4
## Mismatched frequencies for 'X:10162224' f[G,A] = [0.4113499,0.5886501] vs [0.6087,0.3913], chisq 439.894
## Mismatched frequencies for 'X:10164535' f[T,G] = [0.2179315,0.7820685] vs [0.4407,0.5593], chisq 554.9919
## Mismatched frequencies for 'X:10180880' f[G,C] = [0.4798523,0.5201477] vs [0.688,0.312], chisq 534.9503
## Mismatched frequencies for 'X:10239667' f[T,C] = [0.03492277,0.9650772] vs [0.3004,0.6996], chisq 957.623
## Mismatched frequencies for 'X:10245711' f[A,G] = [0.1860309,0.8139691] vs [0.4065,0.5935], chisq 558.3884
## Mismatched frequencies for 'X:10360284' f[A,G] = [0.08697112,0.9130289] vs [0.3424,0.6576], chisq 816.6244
## Mismatched frequencies for 'X:10542627' f[C,A] = [0.2874412,0.7125588] vs [0.4921,0.5079], chisq 458.1748
## Mismatched frequencies for 'X:10627109' f[T,C] = [0.9647414,0.03525856] vs [0.9976,0.0024], chisq 573.6815
## Mismatched frequencies for 'X:10710256' f[C,A] = [0.4630625,0.5369375] vs [0.6443,0.3557], chisq 383.9924
## Mismatched frequencies for 'X:10735037' f[C,T] = [0.08260578,0.9173942] vs [0.33,0.67], chisq 781.6095
## Mismatched frequencies for 'X:10866441' f[C,T] = [0.3942243,0.6057757] vs [0.5797,0.4203], chisq 381.6369
## Mismatched frequencies for 'X:10872756' f[C,T] = [0.2652787,0.7347213] vs [0.4731,0.5269], chisq 474.9929
## Mismatched frequencies for 'X:10980118' f[C,T] = [0.05238415,0.9476159] vs [0.308,0.692], chisq 871.8646
## Mismatched frequencies for 'X:11313027' f[T,C] = [0.309268,0.6907321] vs [0.5006,0.4994], chisq 399.8221
## Mismatched frequencies for 'X:11517970' f[T,C] = [0.0238415,0.9761585] vs [0.2909,0.7091], chisq 990.6174
## Mismatched frequencies for 'X:11565048' f[C,T] = [0.03492277,0.9650772] vs [0.2997,0.7003], chisq 953.9337
## Mismatched frequencies for 'X:11722528' f[A,G] = [0.2471457,0.7528543] vs [0.4423,0.5577], chisq 424.8884
## Mismatched frequencies for 'X:11801228' f[C,G] = [0.2300202,0.7699798] vs [0.4266,0.5734], chisq 435.7423
## Mismatched frequencies for 'X:11823498' f[G,C] = [0.1108126,0.8891874] vs [0.3555,0.6445], chisq 733.1757
## Mismatched frequencies for 'X:11846155' f[A,G] = [0.2830759,0.7169241] vs [0.4748,0.5252], chisq 403.834
## Mismatched frequencies for 'X:11897294' f[G,T] = [0.4066488,0.5933512] vs [0.5756,0.4244], chisq 316.2266
## Mismatched frequencies for 'X:12094341' f[T,C] = [0.0802552,0.9197448] vs [0.3349,0.6651], chisq 821.8667
## Mismatched frequencies for 'X:12271608' f[T,C] = [0.3361316,0.6638684] vs [0.5131,0.4869], chisq 341.7213
## Mismatched frequencies for 'X:12304998' f[T,C] = [0.2098724,0.7901276] vs [0.4198,0.5802], chisq 499.9989
## Mismatched frequencies for 'X:12374676' f[T,C] = [0.4180658,0.5819342] vs [0.5861,0.4139], chisq 314.6056
## Mismatched frequencies for 'X:12432922' f[C,A] = [0.4563465,0.5436535] vs [0.6256,0.3744], chisq 328.8928
## Mismatched frequencies for 'X:12434769' f[T,C] = [0.360309,0.6396911] vs [0.5325,0.4675], chisq 323.938
## Mismatched frequencies for 'X:12437896' f[T,C] = [0.3304231,0.6695769] vs [0.5159,0.4841], chisq 375.3661
## Mismatched frequencies for 'X:12441976' f[A,G] = [0.4066488,0.5933512] vs [0.5809,0.4191], chisq 337.2267
## Mismatched frequencies for 'X:12460765' f[G,A] = [0.2642713,0.7357287] vs [0.4608,0.5392], chisq 426.7292
## Mismatched frequencies for 'X:12499328' f[C,T] = [0.1934184,0.8065816] vs [0.4062,0.5938], chisq 519.9572
## Mismatched frequencies for 'X:12542800' f[G,C] = [0.3401612,0.6598388] vs [0.5204,0.4796], chisq 354.503
## Mismatched frequencies for 'X:12545365' f[A,G] = [0.2871054,0.7128946] vs [0.4773,0.5227], chisq 397.08
## Mismatched frequencies for 'X:12570783' f[G,T] = [0.2222968,0.7777032] vs [0.4381,0.5619], chisq 521.5092
## Mismatched frequencies for 'X:12573070' f[G,A] = [0.2484889,0.7515111] vs [0.4582,0.5418], chisq 486.7374
## Mismatched frequencies for 'X:12579786' f[G,A] = [0.3062458,0.6937542] vs [0.4969,0.5031], chisq 397.1947
## Mismatched frequencies for 'X:12598791' f[G,A] = [0.2699799,0.7300202] vs [0.466,0.534], chisq 423.5689
## Mismatched frequencies for 'X:12625810' f[G,A] = [0.3213566,0.6786434] vs [0.5151,0.4849], chisq 409.5731
## Mismatched frequencies for 'X:12673545' f[C,T] = [0.2471457,0.7528543] vs [0.4489,0.5511], chisq 452.5228
## Mismatched frequencies for 'X:12717744' f[G,C] = [0.3149765,0.6850235] vs [0.5005,0.4995], chisq 375.8967
## Mismatched frequencies for 'X:12755846' f[A,G] = [0.30591,0.69409] vs [0.5003,0.4997], chisq 412.7334
## Mismatched frequencies for 'X:12760070' f[C,T] = [0.3002015,0.6997985] vs [0.4924,0.5076], chisq 403.9764
## Mismatched frequencies for 'X:12770756' f[T,G] = [0.04398926,0.9560108] vs [0.3075,0.6925], chisq 928.8153
## Mismatched frequencies for 'X:12791478' f[A,C] = [0.1954332,0.8045668] vs [0.4133,0.5867], chisq 541.8088
## Mismatched frequencies for 'X:12807342' f[T,G] = [0.2021491,0.7978509] vs [0.4266,0.5734], chisq 569.0637
## Mismatched frequencies for 'X:12809661' f[G,A] = [0.3838146,0.6161854] vs [0.5547,0.4453], chisq 320.7168
## Mismatched frequencies for 'X:12814690' f[A,G] = [0.3797851,0.6202149] vs [0.5523,0.4477], chisq 326.6019
## Mismatched frequencies for 'X:12837558' f[C,T] = [0.2209537,0.7790464] vs [0.4453,0.5547], chisq 561.3233
## Mismatched frequencies for 'X:12838934' f[A,G] = [0.3525856,0.6474144] vs [0.5483,0.4517], chisq 419.6502
## Mismatched frequencies for 'X:12849523' f[C,T] = [0.2347213,0.7652787] vs [0.4395,0.5605], chisq 468.8806
## Mismatched frequencies for 'X:12864700' f[C,A] = [0.1383479,0.8616521] vs [0.3731,0.6269], chisq 657.876
## Mismatched frequencies for 'X:12875371' f[G,A] = [0.2545332,0.7454668] vs [0.4532,0.5468], chisq 437.7087
## Mismatched frequencies for 'X:12915902' f[T,C] = [0.2323707,0.7676293] vs [0.4407,0.5593], chisq 485.0041
## Mismatched frequencies for 'X:12916457' f[A,G] = [0.05910007,0.9408999] vs [0.3133,0.6867], chisq 852.7044
## Mismatched frequencies for 'X:12971524' f[C,T] = [0.2689725,0.7310275] vs [0.4786,0.5214], chisq 482.4183
## Mismatched frequencies for 'X:13009825' f[A,G] = [0.1850235,0.8149765] vs [0.3963,0.6037], chisq 517.5925
## Mismatched frequencies for 'X:13026861' f[C,T] = [0.04768301,0.952317] vs [0.3069,0.6931], chisq 899.2461
## Mismatched frequencies for 'X:13029207' f[A,G] = [0.2864338,0.7135661] vs [0.477,0.523], chisq 398.6744
## Mismatched frequencies for 'X:13191310' f[T,C] = [0.2941571,0.7058429] vs [0.4916,0.5084], chisq 426.4263
## Mismatched frequencies for 'X:13227350' f[C,T] = [0.2743452,0.7256548] vs [0.4755,0.5245], chisq 444.553
## Mismatched frequencies for 'X:13232833' f[C,T] = [0.241773,0.758227] vs [0.447,0.553], chisq 468.8144
## Mismatched frequencies for 'X:13376608' f[G,A] = [0.08730692,0.9126931] vs [0.3395,0.6605], chisq 799.5435
## Mismatched frequencies for 'X:13438769' f[A,G] = [0.2787105,0.7212895] vs [0.4877,0.5123], chisq 478.2724
## Mismatched frequencies for 'X:13496932' f[G,C] = [0.421088,0.578912] vs [0.5893,0.4107], chisq 315.8767
## Mismatched frequencies for 'X:13498278' f[G,A] = [0.3844862,0.6155137] vs [0.5675,0.4325], chisq 369.4779
## Mismatched frequencies for 'X:13535330' f[A,G] = [0.4180658,0.5819342] vs [0.5892,0.4108], chisq 326.8774
## Mismatched frequencies for 'X:13606861' f[C,T] = [0.3116185,0.6883815] vs [0.5127,0.4873], chisq 441.2145
## Mismatched frequencies for 'X:13640788' f[A,G] = [0.4120215,0.5879785] vs [0.5836,0.4164], chisq 327.4892
## Mismatched frequencies for 'X:13674234' f[G,A] = [0.4449295,0.5550705] vs [0.6213,0.3787], chisq 355.5373
## Mismatched frequencies for 'X:13681115' f[C,T] = [0.4382136,0.5617864] vs [0.6154,0.3846], chisq 356.9863
## Mismatched frequencies for 'X:13681638' f[C,T] = [0.437542,0.562458] vs [0.6154,0.3846], chisq 359.6806
## Mismatched frequencies for 'X:13681679' f[G,T] = [0.4304903,0.5695097] vs [0.6077,0.3923], chisq 354.8776
## Mismatched frequencies for 'X:13714062' f[A,G] = [0.3666891,0.633311] vs [0.5415,0.4585], chisq 334.3977
## Mismatched frequencies for 'X:13724997' f[G,A] = [0.3740766,0.6259235] vs [0.5447,0.4553], chisq 318.8287
## Mismatched frequencies for 'X:13850785' f[C,T] = [0.2981867,0.7018133] vs [0.4793,0.5207], chisq 359.7681
## Mismatched frequencies for 'X:13860540' f[C,T] = [0.3112827,0.6887172] vs [0.4961,0.5039], chisq 373.2643
## Mismatched frequencies for 'X:13872122' f[T,C] = [0.2971793,0.7028207] vs [0.4847,0.5153], chisq 385.1697
## Mismatched frequencies for 'X:13885784' f[C,G] = [0.4120215,0.5879785] vs [0.5787,0.4213], chisq 308.2957
## Mismatched frequencies for 'X:13891347' f[G,A] = [0.1571524,0.8428475] vs [0.3889,0.6111], chisq 628.8972
## Mismatched frequencies for 'X:13938480' f[C,T] = [0.2884486,0.7115514] vs [0.4823,0.5177], chisq 411.9306
## Mismatched frequencies for 'X:14081397' f[A,G] = [0.1403627,0.8596373] vs [0.3676,0.6324], chisq 620.3716
## Mismatched frequencies for 'X:14110696' f[T,G] = [0.02182673,0.9781733] vs [0.2928,0.7072], chisq 1016.121
## Mismatched frequencies for 'X:14111541' f[C,G] = [0.1440564,0.8559436] vs [0.3718,0.6282], chisq 619.7477
## Mismatched frequencies for 'X:14585133' f[C,T] = [0.4378778,0.5621222] vs [0.6068,0.3932], chisq 322.4104
## Mismatched frequencies for 'X:14602610' f[G,A] = [0.4026192,0.5973808] vs [0.5743,0.4257], chisq 326.2811
## Mismatched frequencies for 'X:14836765' f[G,A] = [0.404634,0.595366] vs [0.577,0.423], chisq 329.3232
## Mismatched frequencies for 'X:14862289' f[A,G] = [0.02552048,0.9744795] vs [0.2916,0.7084], chisq 981.5605
## Mismatched frequencies for 'X:14898674' f[A,G] = [0.384822,0.615178] vs [0.5574,0.4426], chisq 327.3822
## Mismatched frequencies for 'X:14952757' f[C,T] = [0.452317,0.547683] vs [0.6182,0.3818], chisq 313.8968
## Mismatched frequencies for 'X:15115139' f[G,C] = [0.9593687,0.0406313] vs [0.9955,0.0045], chisq 476.1686
## Mismatched frequencies for 'X:15205172' f[G,A] = [0.02484889,0.9751511] vs [0.2949,0.7051], chisq 1004.14
## Mismatched frequencies for 'X:15243610' f[T,C] = [0.03458697,0.965413] vs [0.2986,0.7014], chisq 950.6263
## Mismatched frequencies for 'X:15262432' f[A,C] = [0.1994627,0.8005373] vs [0.4232,0.5768], chisq 566.924
## Mismatched frequencies for 'X:15263265' f[T,C] = [0.2263264,0.7736736] vs [0.4396,0.5604], chisq 508.7887
## Mismatched frequencies for 'X:15496068' f[T,C] = [0.3096038,0.6903963] vs [0.4928,0.5072], chisq 366.9406
## Mismatched frequencies for 'X:15614145' f[G,A] = [0.3666891,0.633311] vs [0.5351,0.4649], chisq 310.0124
## Mismatched frequencies for 'X:15749031' f[A,G] = [0.2024849,0.7975151] vs [0.4362,0.5638], chisq 613.0749
## Mismatched frequencies for 'X:15753266' f[G,A] = [0.01276024,0.9872398] vs [0.2875,0.7125], chisq 1058.608
## Mismatched frequencies for 'X:15860834' f[T,C] = [0.2871054,0.7128946] vs [0.4612,0.5388], chisq 334.5281
## Mismatched frequencies for 'X:16042662' f[C,T] = [0.1524513,0.8475487] vs [0.3935,0.6065], chisq 677.5336
## Mismatched frequencies for 'X:16048056' f[G,T] = [0.04701142,0.9529886] vs [0.3128,0.6872], chisq 935.0072
## Mismatched frequencies for 'X:16048548' f[A,G] = [0.01779718,0.9822028] vs [0.2923,0.7077], chisq 1044.71
## Mismatched frequencies for 'X:16404153' f[T,C] = [0.06514439,0.9348556] vs [0.3201,0.6799], chisq 846.4886
## Mismatched frequencies for 'X:16608793' f[G,A] = [0.04734721,0.9526528] vs [0.31,0.69], chisq 917.8373
## Mismatched frequencies for 'X:16667224' f[C,T] = [0.05238415,0.9476159] vs [0.3168,0.6832], chisq 917.7698
## Mismatched frequencies for 'X:16771043' f[A,G] = [0.1675621,0.8324379] vs [0.3822,0.6178], chisq 542.7299
## Mismatched frequencies for 'X:16914085' f[G,A] = [0.197448,0.802552] vs [0.4037,0.5963], chisq 489.4414
## Mismatched frequencies for 'X:16951552' f[C,T] = [0.05775688,0.9422431] vs [0.3235,0.6765], chisq 915.2759
## Mismatched frequencies for 'X:16995148' f[G,A] = [0.2051713,0.7948288] vs [0.4113,0.5887], chisq 485.4339
## Mismatched frequencies for 'X:17098454' f[C,T] = [0.1991269,0.800873] vs [0.4113,0.5887], chisq 514.5527
## Mismatched frequencies for 'X:17146291' f[C,G] = [0.2068502,0.7931498] vs [0.4103,0.5897], chisq 473.2248
## Mismatched frequencies for 'X:17319018' f[C,G] = [0.1762928,0.8237072] vs [0.3997,0.6003], chisq 577.3297
## Mismatched frequencies for 'X:17523998' f[A,G] = [0.2011417,0.7988583] vs [0.4138,0.5862], chisq 515.7895
## Mismatched frequencies for 'X:17529332' f[A,G] = [0.287777,0.712223] vs [0.4752,0.5248], chisq 385.8212
## Mismatched frequencies for 'X:17574893' f[G,A] = [0.0809268,0.9190732] vs [0.3281,0.6719], chisq 782.8579
## Mismatched frequencies for 'X:17902830' f[T,C] = [0.06682337,0.9331766] vs [0.3186,0.6814], chisq 827.4779
## Mismatched frequencies for 'X:18152685' f[A,G] = [0.3431833,0.6568167] vs [0.5216,0.4784], chisq 347.3937
## Mismatched frequencies for 'X:18212905' f[A,G] = [0.3317663,0.6682337] vs [0.5143,0.4857], chisq 363.5492
## Mismatched frequencies for 'X:18419750' f[G,A] = [0.1064473,0.8935527] vs [0.3522,0.6478], chisq 743.3461
## Mismatched frequencies for 'X:18671795' f[A,G] = [0.2904634,0.7095366] vs [0.5124,0.4876], chisq 537.5278
## Mismatched frequencies for 'X:18673707' f[C,T] = [0.2871054,0.7128946] vs [0.5051,0.4949], chisq 518.8837
## Mismatched frequencies for 'X:18683522' f[T,C] = [0.3918738,0.6081263] vs [0.5808,0.4192], chisq 396.1373
## Mismatched frequencies for 'X:18739086' f[G,C] = [0.4402283,0.5597717] vs [0.6115,0.3885], chisq 332.6181
## Mismatched frequencies for 'X:18824274' f[A,G] = [0.307589,0.692411] vs [0.5186,0.4814], chisq 485.8327
## Mismatched frequencies for 'X:18824794' f[T,G] = [0.3082606,0.6917394] vs [0.5183,0.4817], chisq 481.3684
## Mismatched frequencies for 'X:18828563' f[G,T] = [0.4513096,0.5486904] vs [0.6232,0.3768], chisq 338.3989
## Mismatched frequencies for 'X:18846999' f[T,G] = [0.2394224,0.7605776] vs [0.4675,0.5325], chisq 573.722
## Mismatched frequencies for 'X:18863779' f[C,G] = [0.30591,0.69409] vs [0.4974,0.5026], chisq 400.6585
## Mismatched frequencies for 'X:18870942' f[G,A] = [0.2683009,0.7316991] vs [0.4678,0.5322], chisq 438.4717
## Mismatched frequencies for 'X:18874926' f[T,C] = [0.1588314,0.8411686] vs [0.3993,0.6007], chisq 670.1271
## Mismatched frequencies for 'X:18879795' f[A,G] = [0.1591672,0.8408328] vs [0.4098,0.5902], chisq 721.1141
## Mismatched frequencies for 'X:18885944' f[T,G] = [0.2259906,0.7740094] vs [0.4525,0.5475], chisq 569.909
## Mismatched frequencies for 'X:19066812' f[A,C] = [0.3277367,0.6722633] vs [0.5267,0.4733], chisq 432.11
## Mismatched frequencies for 'X:19069714' f[T,C] = [0.2958361,0.7041639] vs [0.4976,0.5024], chisq 444.8494
## Mismatched frequencies for 'X:19122321' f[A,G] = [0.05372733,0.9462727] vs [0.308,0.692], chisq 862.5227
## Mismatched frequencies for 'X:19464848' f[A,G] = [0.1427132,0.8572867] vs [0.3799,0.6201], chisq 666.0816
## Mismatched frequencies for 'X:19477177' f[C,T] = [0.1057757,0.8942243] vs [0.3651,0.6349], chisq 813.6778
## Mismatched frequencies for 'X:19482476' f[C,T] = [0.1077905,0.8922095] vs [0.3682,0.6318], chisq 817.1176
## Mismatched frequencies for 'X:19484274' f[T,C] = [0.1024177,0.8975823] vs [0.3567,0.6433], chisq 791.3416
## Mismatched frequencies for 'X:19504273' f[C,A] = [0.1202149,0.8797851] vs [0.3781,0.6219], chisq 790.8514
## Mismatched frequencies for 'X:19523404' f[C,T] = [0.1178643,0.8821357] vs [0.3577,0.6423], chisq 701.6987
## Mismatched frequencies for 'X:20101049' f[G,A] = [0.1403627,0.8596373] vs [0.3615,0.6385], chisq 592.0074
## Mismatched frequencies for 'X:20409842' f[G,A] = [0.0245131,0.9754869] vs [0.296,0.704], chisq 1012.57
## Mismatched frequencies for 'X:20421419' f[C,T] = [0.05204835,0.9479517] vs [0.3108,0.6892], chisq 888.7071
## Mismatched frequencies for 'X:20465043' f[A,G] = [0.0564137,0.9435863] vs [0.3191,0.6809], chisq 901.4708
## Mismatched frequencies for 'X:20582924' f[C,T] = [0.03626595,0.963734] vs [0.3001,0.6999], chisq 946.1441
## Mismatched frequencies for 'X:20886077' f[G,A] = [0.002350571,0.9976494] vs [0.2822,0.7178], chisq 1113.999
## Mismatched frequencies for 'X:21092652' f[A,G] = [0.2760242,0.7239758] vs [0.465,0.535], chisq 393.7381
## Mismatched frequencies for 'X:21099757' f[T,C] = [0.01914036,0.9808596] vs [0.2944,0.7056], chisq 1045.506
## Mismatched frequencies for 'X:21486834' f[T,G] = [0.06111484,0.9388851] vs [0.3211,0.6789], chisq 879.2411
## Mismatched frequencies for 'X:21633210' f[A,G] = [0.02249832,0.9775017] vs [0.2963,0.7037], chisq 1029.662
## Mismatched frequencies for 'X:21694673' f[A,G] = [0.05876427,0.9412357] vs [0.3291,0.6709], chisq 938.0652
## Mismatched frequencies for 'X:21766559' f[G,A] = [0.0245131,0.9754869] vs [0.297,0.703], chisq 1017.917
## Mismatched frequencies for 'X:22002856' f[G,A] = [0.1145064,0.8854936] vs [0.3568,0.6432], chisq 717.3125
## Mismatched frequencies for 'X:22004183' f[G,C] = [0.2766958,0.7233042] vs [0.4825,0.5175], chisq 464.3993
## Mismatched frequencies for 'X:22007752' f[A,G] = [0.4442579,0.5557421] vs [0.6096,0.3904], chisq 309.638
## Mismatched frequencies for 'X:22036245' f[G,A] = [0.3710544,0.6289456] vs [0.5376,0.4624], chisq 303.327
## Mismatched frequencies for 'X:22081875' f[T,G] = [0.241773,0.758227] vs [0.4441,0.5559], chisq 456.3667
## Mismatched frequencies for 'X:22147968' f[C,A] = [0.340497,0.659503] vs [0.5135,0.4865], chisq 326.5761
## Mismatched frequencies for 'X:22148051' f[C,T] = [0.3415044,0.6584956] vs [0.514,0.486], chisq 324.6623
## Mismatched frequencies for 'X:22162402' f[T,C] = [0.3995971,0.6004029] vs [0.5716,0.4284], chisq 327.0831
## Mismatched frequencies for 'X:22177027' f[G,A] = [0.3888516,0.6111484] vs [0.5775,0.4225], chisq 394.3076
## Mismatched frequencies for 'X:22307083' f[C,T] = [0.327401,0.6725991] vs [0.5102,0.4898], chisq 364.6443
## Mismatched frequencies for 'X:22448964' f[C,T] = [0.1652116,0.8347884] vs [0.4,0.6], chisq 638.0749
## Mismatched frequencies for 'X:22540197' f[A,G] = [0.02854264,0.9714574] vs [0.3018,0.6982], chisq 1012.905
## Mismatched frequencies for 'X:22648403' f[A,C] = [0.2521827,0.7478173] vs [0.4565,0.5435], chisq 462.3026
## Mismatched frequencies for 'X:22694412' f[C,A] = [0.3129617,0.6870383] vs [0.5066,0.4934], chisq 409.2796
## Mismatched frequencies for 'X:22751065' f[G,A] = [0.4996642,0.5003358] vs [0.6592,0.3408], chisq 303.5174
## Mismatched frequencies for 'X:22752561' f[A,G] = [0.07857622,0.9214238] vs [0.3361,0.6639], chisq 839.1656
## Mismatched frequencies for 'X:22760691' f[T,C] = [0.3116185,0.6883815] vs [0.5359,0.4641], chisq 549.5001
## Mismatched frequencies for 'X:22766721' f[C,A] = [0.1460712,0.8539288] vs [0.38,0.62], chisq 647.6152
## Mismatched frequencies for 'X:22787014' f[G,T] = [0.2914708,0.7085292] vs [0.4917,0.5083], chisq 438.5588
## Mismatched frequencies for 'X:22803131' f[A,G] = [0.3932169,0.6067831] vs [0.5584,0.4416], chisq 300.0984
## Mismatched frequencies for 'X:22807950' f[C,T] = [0.1967764,0.8032237] vs [0.4133,0.5867], chisq 535.0957
## Mismatched frequencies for 'X:22817683' f[C,T] = [0.2202821,0.7797179] vs [0.4285,0.5715], chisq 488.5308
## Mismatched frequencies for 'X:22852105' f[C,G] = [0.3482203,0.6517797] vs [0.5207,0.4793], chisq 324.6521
## Mismatched frequencies for 'X:22856079' f[A,G] = [0.2609134,0.7390866] vs [0.4563,0.5437], chisq 422.6575
## Mismatched frequencies for 'X:22862268' f[T,C] = [0.09368704,0.9063129] vs [0.338,0.662], chisq 751.4153
## Mismatched frequencies for 'X:22883547' f[A,G] = [0.04197448,0.9580255] vs [0.3066,0.6934], chisq 938.6583
## Mismatched frequencies for 'X:22892077' f[A,G] = [0.3374748,0.6625252] vs [0.5093,0.4907], chisq 322.1771
## Mismatched frequencies for 'X:22914644' f[C,G] = [0.1816656,0.8183345] vs [0.4007,0.5993], chisq 554.1899
## Mismatched frequencies for 'X:22920234' f[G,A] = [0.4036266,0.5963734] vs [0.5764,0.4236], chisq 330.7757
## Mismatched frequencies for 'X:22927485' f[T,C] = [0.2437878,0.7562122] vs [0.4552,0.5448], chisq 495.4369
## Mismatched frequencies for 'X:23007778' f[G,A] = [0.1662189,0.8337811] vs [0.4031,0.5969], chisq 647.5992
## Mismatched frequencies for 'X:23145797' f[T,C] = [0.3576226,0.6423774] vs [0.5508,0.4492], chisq 409.1374
## Mismatched frequencies for 'X:23150292' f[G,A] = [0.2081934,0.7918066] vs [0.4282,0.5718], chisq 545.9367
## Mismatched frequencies for 'X:23230309' f[A,G] = [0.356951,0.643049] vs [0.5396,0.4604], chisq 364.8659
## Mismatched frequencies for 'X:23294920' f[T,C] = [0.2686367,0.7313634] vs [0.4867,0.5133], chisq 520.9317
## Mismatched frequencies for 'X:23299480' f[T,C] = [0.3643385,0.6356615] vs [0.5628,0.4372], chisq 433.4508
## Mismatched frequencies for 'X:23301489' f[G,T] = [0.08999328,0.9100067] vs [0.3494,0.6506], chisq 833.2996
## Mismatched frequencies for 'X:23307761' f[T,G] = [0.1437206,0.8562794] vs [0.3862,0.6138], chisq 691.3219
## Mismatched frequencies for 'X:23312332' f[T,C] = [0.4254533,0.5745467] vs [0.6087,0.3913], chisq 379.6128
## Mismatched frequencies for 'X:23313842' f[T,C] = [0.1870383,0.8129617] vs [0.4126,0.5874], chisq 581.4497
## Mismatched frequencies for 'X:23320121' f[T,C] = [0.1390195,0.8609805] vs [0.3591,0.6409], chisq 588.2719
## Mismatched frequencies for 'X:23322621' f[C,A] = [0.3579583,0.6420416] vs [0.5238,0.4762], chisq 300.2144
## Mismatched frequencies for 'X:23333838' f[C,G] = [0.3263935,0.6736065] vs [0.5144,0.4856], chisq 385.6773
## Mismatched frequencies for 'X:23342599' f[C,T] = [0.0889859,0.9110141] vs [0.331,0.669], chisq 746.0558
## Mismatched frequencies for 'X:23374991' f[C,G] = [0.1648758,0.8351243] vs [0.3969,0.6031], chisq 624.982
## Mismatched frequencies for 'X:23383193' f[C,T] = [0.2820685,0.7179315] vs [0.4828,0.5172], chisq 441.6993
## Mismatched frequencies for 'X:23384395' f[C,G] = [0.2541974,0.7458026] vs [0.4563,0.5437], chisq 452.3375
## Mismatched frequencies for 'X:23391183' f[G,A] = [0.1642042,0.8357958] vs [0.3923,0.6077], chisq 606.7486
## Mismatched frequencies for 'X:23525464' f[A,G] = [0.3226998,0.6773002] vs [0.5073,0.4927], chisq 371.9261
## Mismatched frequencies for 'X:23635211' f[T,C] = [0.05473472,0.9452653] vs [0.3119,0.6881], chisq 875.633
## Mismatched frequencies for 'X:23673484' f[C,T] = [0.1574882,0.8425118] vs [0.3772,0.6228], chisq 572.4095
## Mismatched frequencies for 'X:23676892' f[T,C] = [0.1165212,0.8834788] vs [0.348,0.652], chisq 662.5527
## Mismatched frequencies for 'X:23710831' f[T,C] = [0.1051041,0.8948959] vs [0.3399,0.6601], chisq 690.8949
## Mismatched frequencies for 'X:23729668' f[A,G] = [0.01712559,0.9828744] vs [0.2907,0.7093], chisq 1041.385
## Mismatched frequencies for 'X:23737430' f[G,A] = [0.1783076,0.8216924] vs [0.4207,0.5793], chisq 667.6064
## Mismatched frequencies for 'X:23747478' f[A,G] = [0.3875084,0.6124916] vs [0.57,0.43], chisq 367.7766
## Mismatched frequencies for 'X:23788151' f[C,T] = [0.3650101,0.6349899] vs [0.5363,0.4637], chisq 320.7551
## Mismatched frequencies for 'X:23799738' f[A,C] = [0.2112156,0.7887844] vs [0.4451,0.5549], chisq 610.4374
## Mismatched frequencies for 'X:23800039' f[A,G] = [0.2118872,0.7881128] vs [0.4476,0.5524], chisq 619.1468
## Mismatched frequencies for 'X:23902490' f[A,G] = [0.177636,0.822364] vs [0.4079,0.5921], chisq 608.7755
## Mismatched frequencies for 'X:23928489' f[C,T] = [0.2807253,0.7192747] vs [0.5061,0.4939], chisq 554.5896
## Mismatched frequencies for 'X:23944707' f[T,C] = [0.1779718,0.8220282] vs [0.4083,0.5917], chisq 608.8901
## Mismatched frequencies for 'X:23962643' f[C,T] = [0.2810611,0.7189389] vs [0.5094,0.4906], chisq 569.1167
## Mismatched frequencies for 'X:24088952' f[G,A] = [0.3213566,0.6786434] vs [0.5192,0.4808], chisq 427.1002
## Mismatched frequencies for 'X:24110148' f[G,T] = [0.3129617,0.6870383] vs [0.5052,0.4948], chisq 403.4255
## Mismatched frequencies for 'X:24140982' f[T,C] = [0.278039,0.721961] vs [0.4905,0.5095], chisq 494.0092
## Mismatched frequencies for 'X:24209009' f[C,T] = [0.0802552,0.9197448] vs [0.3384,0.6616], chisq 839.9875
## Mismatched frequencies for 'X:24261585' f[T,C] = [0.03626595,0.963734] vs [0.3046,0.6954], chisq 969.9287
## Mismatched frequencies for 'X:24268705' f[T,C] = [0.03626595,0.963734] vs [0.3024,0.6976], chisq 958.2654
## Mismatched frequencies for 'X:24278867' f[G,A] = [0.4482874,0.5517126] vs [0.6137,0.3863], chisq 310.9353
## Mismatched frequencies for 'X:24443147' f[A,G] = [0.06380121,0.9361988] vs [0.3277,0.6723], chisq 895.3296
## Mismatched frequencies for 'X:24501753' f[T,C] = [0.0399597,0.9600403] vs [0.3015,0.6985], chisq 926.5102
## Mismatched frequencies for 'X:24578306' f[G,A] = [0.3532572,0.6467428] vs [0.5442,0.4558], chisq 399.0813
## Mismatched frequencies for 'X:24578803' f[C,T] = [0.3593015,0.6406984] vs [0.5446,0.4554], chisq 375.9115
## Mismatched frequencies for 'X:24613189' f[C,T] = [0.4100067,0.5899933] vs [0.5776,0.4224], chisq 311.4977
## Mismatched frequencies for 'X:24985875' f[T,C] = [0.2259906,0.7740094] vs [0.4406,0.5594], chisq 514.89
## Mismatched frequencies for 'X:25016033' f[G,A] = [0.0560779,0.9439221] vs [0.3178,0.6822], chisq 896.9971
## Mismatched frequencies for 'X:25093379' f[G,A] = [0.06883815,0.9311619] vs [0.3165,0.6835], chisq 803.3962
## Mismatched frequencies for 'X:25276610' f[A,G] = [0.02048355,0.9795164] vs [0.2927,0.7073], chisq 1025.956
## Mismatched frequencies for 'X:25631171' f[G,A] = [0.4435863,0.5564137] vs [0.616,0.384], chisq 338.2988
## Mismatched frequencies for 'X:25706324' f[C,T] = [0.2535258,0.7464741] vs [0.4599,0.5401], chisq 470.9287
## Mismatched frequencies for 'X:25717046' f[A,G] = [0.3156481,0.6843519] vs [0.5109,0.4891], chisq 416.0241
## Mismatched frequencies for 'X:25725344' f[T,C] = [0.3331095,0.6668905] vs [0.5148,0.4852], chisq 360.1971
## Mismatched frequencies for 'X:25751456' f[C,A] = [0.3593015,0.6406984] vs [0.532,0.468], chisq 325.8247
## Mismatched frequencies for 'X:25774782' f[C,T] = [0.2330423,0.7669577] vs [0.4636,0.5364], chisq 587.3152
## Mismatched frequencies for 'X:25778163' f[G,T] = [0.1642042,0.8357958] vs [0.4101,0.5899], chisq 693.6618
## Mismatched frequencies for 'X:26429860' f[A,G] = [0.2478173,0.7521827] vs [0.4503,0.5497], chisq 455.4613
## Mismatched frequencies for 'X:26719303' f[G,A] = [0.4778375,0.5221625] vs [0.6397,0.3603], chisq 305.2879
## Mismatched frequencies for 'X:26946350' f[G,A] = [0.1524513,0.8475487] vs [0.3855,0.6145], chisq 638.5247
## Mismatched frequencies for 'X:27029028' f[T,C] = [0.1289456,0.8710544] vs [0.3715,0.6285], chisq 704.3881
## Mismatched frequencies for 'X:27109578' f[A,G] = [0.2431162,0.7568838] vs [0.4508,0.5492], chisq 479.1443
## Mismatched frequencies for 'X:27110222' f[C,A] = [0.02921424,0.9707857] vs [0.2956,0.7044], chisq 974.8122
## Mismatched frequencies for 'X:27190319' f[C,T] = [0.2860981,0.7139019] vs [0.4858,0.5142], chisq 436.8276
## Mismatched frequencies for 'X:27237909' f[C,T] = [0.2857622,0.7142378] vs [0.4851,0.5149], chisq 435.3088
## Mismatched frequencies for 'X:27459852' f[T,C] = [0.2988583,0.7011417] vs [0.489,0.511], chisq 395.6361
## Mismatched frequencies for 'X:27494664' f[C,T] = [0.1642042,0.8357958] vs [0.4075,0.5925], chisq 680.5941
## Mismatched frequencies for 'X:27512043' f[G,A] = [0.2975151,0.7024849] vs [0.5223,0.4777], chisq 551.353
## Mismatched frequencies for 'X:27524625' f[C,G] = [0.302552,0.697448] vs [0.5258,0.4742], chisq 543.9217
## Mismatched frequencies for 'X:27563413' f[A,G] = [0.04130289,0.9586971] vs [0.314,0.686], chisq 983.0088
## Mismatched frequencies for 'X:27577924' f[T,C] = [0.1621894,0.8378106] vs [0.4027,0.5973], chisq 668.0634
## Mismatched frequencies for 'X:27579602' f[T,C] = [0.4281397,0.5718603] vs [0.603,0.397], chisq 344.3666
## Mismatched frequencies for 'X:27854625' f[C,G] = [0.04197448,0.9580255] vs [0.3024,0.6976], chisq 916.6389
## Mismatched frequencies for 'X:28084744' f[G,T] = [0.05339154,0.9466085] vs [0.3198,0.6802], chisq 926.5018
## Mismatched frequencies for 'X:28194472' f[G,A] = [0.3720618,0.6279382] vs [0.5447,0.4553], chisq 326.3894
## Mismatched frequencies for 'X:28233053' f[G,A] = [0.2854265,0.7145736] vs [0.4664,0.5336], chisq 360.797
## Mismatched frequencies for 'X:28378212' f[C,T] = [0.245131,0.754869] vs [0.4606,0.5394], chisq 513.3662
## Mismatched frequencies for 'X:28433309' f[C,T] = [0.2988583,0.7011417] vs [0.4838,0.5162], chisq 374.7125
## Mismatched frequencies for 'X:28455235' f[A,C] = [0.3441907,0.6558093] vs [0.5374,0.4626], chisq 408.0471
## Mismatched frequencies for 'X:28529453' f[T,C] = [0.2733378,0.7266622] vs [0.4824,0.5176], chisq 479.2692
## Mismatched frequencies for 'X:28543247' f[A,G] = [0.04096709,0.9590329] vs [0.3071,0.6929], chisq 948.6327
## Mismatched frequencies for 'X:28561647' f[C,T] = [0.2914708,0.7085292] vs [0.5033,0.4967], chisq 490.0182
## Mismatched frequencies for 'X:28647631' f[C,T] = [0.226998,0.773002] vs [0.4357,0.5643], chisq 488.3379
## Mismatched frequencies for 'X:28687244' f[A,G] = [0.3361316,0.6638684] vs [0.5135,0.4865], chisq 343.2661
## Mismatched frequencies for 'X:28841156' f[T,C] = [0.06548019,0.9345198] vs [0.3304,0.6696], chisq 897.9966
## Mismatched frequencies for 'X:29033630' f[A,G] = [0.05708529,0.9429147] vs [0.3154,0.6846], chisq 877.4479
## Mismatched frequencies for 'X:29079243' f[T,C] = [0.02854264,0.9714574] vs [0.297,0.703], chisq 987.2756
## Mismatched frequencies for 'X:29167809' f[A,G] = [0.3505709,0.6494291] vs [0.5405,0.4595], chisq 394.5537
## Mismatched frequencies for 'X:29182769' f[T,C] = [0.1376763,0.8623237] vs [0.3793,0.6207], chisq 692.056
## Mismatched frequencies for 'X:29218702' f[T,C] = [0.1564809,0.8435191] vs [0.425,0.575], chisq 817.8667
## Mismatched frequencies for 'X:29245608' f[A,C] = [0.3854936,0.6145064] vs [0.5997,0.4003], chisq 514.3922
## Mismatched frequencies for 'X:29245919' f[A,C] = [0.3290799,0.6709201] vs [0.5263,0.4737], chisq 424.563
## Mismatched frequencies for 'X:29253167' f[C,T] = [0.4573539,0.542646] vs [0.6364,0.3636], chisq 371.6844
## Mismatched frequencies for 'X:29276212' f[A,C] = [0.2981867,0.7018133] vs [0.5105,0.4895], chisq 491.9525
## Mismatched frequencies for 'X:29315217' f[G,A] = [0.3972465,0.6027535] vs [0.5676,0.4324], chisq 320.2866
## Mismatched frequencies for 'X:29358843' f[C,G] = [0.4150436,0.5849564] vs [0.6132,0.3868], chisq 445.0365
## Mismatched frequencies for 'X:29377273' f[A,C] = [0.4207522,0.5792478] vs [0.5982,0.4018], chisq 353.3774
## Mismatched frequencies for 'X:29406962' f[T,G] = [0.3670248,0.6329752] vs [0.5454,0.4546], chisq 348.4608
## Mismatched frequencies for 'X:29573719' f[A,C] = [0.44728,0.5527199] vs [0.6149,0.3851], chisq 319.5603
## Mismatched frequencies for 'X:29656527' f[C,T] = [0.006380121,0.9936199] vs [0.2838,0.7162], chisq 1089.811
## Mismatched frequencies for 'X:29830159' f[C,T] = [0.4284755,0.5715245] vs [0.6,0.4], chisq 330.7073
## Mismatched frequencies for 'X:29903337' f[T,C] = [0.1823371,0.8176628] vs [0.4167,0.5833], chisq 625.8653
## Mismatched frequencies for 'X:29934702' f[G,A] = [0.01276024,0.9872398] vs [0.2928,0.7072], chisq 1087.191
## Mismatched frequencies for 'X:30139299' f[T,C] = [0.3401612,0.6598388] vs [0.5374,0.4626], chisq 425.2207
## Mismatched frequencies for 'X:30254376' f[T,C] = [0.09234385,0.9076561] vs [0.3547,0.6453], chisq 845.7665
## Mismatched frequencies for 'X:30261158' f[G,C] = [0.09267965,0.9073203] vs [0.3547,0.6453], chisq 843.567
## Mismatched frequencies for 'X:30283575' f[A,G] = [0.09234385,0.9076561] vs [0.3547,0.6453], chisq 845.7665
## Mismatched frequencies for 'X:30304131' f[C,T] = [0.03693754,0.9630625] vs [0.3116,0.6884], chisq 1002.468
## Mismatched frequencies for 'X:30318173' f[C,G] = [0.03357958,0.9664204] vs [0.3094,0.6906], chisq 1015.772
## Mismatched frequencies for 'X:30331349' f[A,G] = [0.1148422,0.8851578] vs [0.3771,0.6229], chisq 819.3074
## Mismatched frequencies for 'X:30339327' f[T,C] = [0.2793821,0.7206179] vs [0.493,0.507], chisq 499.1518
## Mismatched frequencies for 'X:30406849' f[A,G] = [0.08159839,0.9184016] vs [0.3462,0.6538], chisq 872.025
## Mismatched frequencies for 'X:30411673' f[T,C] = [0.2555406,0.7444594] vs [0.4718,0.5282], chisq 514.7262
## Mismatched frequencies for 'X:30568572' f[C,T] = [0.1994627,0.8005373] vs [0.4201,0.5799], chisq 552.5866
## Mismatched frequencies for 'X:30577846' f[A,C] = [0.2501679,0.7498321] vs [0.4493,0.5507], chisq 440.6856
## Mismatched frequencies for 'X:30721628' f[G,A] = [0.3277367,0.6722633] vs [0.5115,0.4885], chisq 368.4848
## Mismatched frequencies for 'X:30782994' f[T,G] = [0.3596374,0.6403627] vs [0.5457,0.4543], chisq 379.1117
## Mismatched frequencies for 'X:30917669' f[G,T] = [0.1182001,0.8817999] vs [0.3587,0.6413], chisq 704.6268
## Mismatched frequencies for 'X:30949584' f[A,G] = [0.4123573,0.5876427] vs [0.5789,0.4211], chisq 307.8278
## Mismatched frequencies for 'X:30954662' f[C,T] = [0.1712559,0.8287441] vs [0.4042,0.5958], chisq 625.3731
## Mismatched frequencies for 'X:30970424' f[C,T] = [0.3314305,0.6685695] vs [0.5339,0.4661], chisq 447.8065
## Mismatched frequencies for 'X:30975535' f[A,G] = [0.157824,0.842176] vs [0.3975,0.6025], chisq 666.9129
## Mismatched frequencies for 'X:30980669' f[T,G] = [0.2024849,0.7975151] vs [0.4436,0.5564], chisq 649.6118
## Mismatched frequencies for 'X:30999375' f[G,T] = [0.1544661,0.8455339] vs [0.3895,0.6105], chisq 646.6259
## Mismatched frequencies for 'X:31015674' f[G,A] = [0.3038952,0.6961048] vs [0.5015,0.4985], chisq 426.4484
## Mismatched frequencies for 'X:31020702' f[C,T] = [0.2112156,0.7887844] vs [0.4321,0.5679], chisq 548.7676
## Mismatched frequencies for 'X:31156285' f[T,C] = [0.1165212,0.8834788] vs [0.3813,0.6187], chisq 830.9972
## Mismatched frequencies for 'X:31162781' f[G,T] = [0.1736064,0.8263935] vs [0.4076,0.5924], chisq 629.0187
## Mismatched frequencies for 'X:31211220' f[C,T] = [0.1527871,0.8472129] vs [0.3928,0.6072], chisq 672.1709
## Mismatched frequencies for 'X:31215747' f[A,C] = [0.3697112,0.6302888] vs [0.5414,0.4586], chisq 322.5707
## Mismatched frequencies for 'X:31224684' f[A,G] = [0.1252518,0.8747482] vs [0.361,0.639], chisq 674.4542
## Mismatched frequencies for 'X:31226314' f[A,G] = [0.02216252,0.9778375] vs [0.2914,0.7086], chisq 1006.097
## Mismatched frequencies for 'X:31231672' f[C,T] = [0.07790463,0.9220954] vs [0.3325,0.6675], chisq 824.995
## Mismatched frequencies for 'X:31232814' f[T,C] = [0.02518469,0.9748153] vs [0.2916,0.7084], chisq 984.1047
## Mismatched frequencies for 'X:31237433' f[C,T] = [0.2048355,0.7951645] vs [0.4243,0.5757], chisq 544.8514
## Mismatched frequencies for 'X:31311680' f[G,A] = [0.2162525,0.7837475] vs [0.412,0.588], chisq 437.1635
## Mismatched frequencies for 'X:31320892' f[C,T] = [0.0883143,0.9116857] vs [0.3349,0.6651], chisq 769.7669
## Mismatched frequencies for 'X:31437805' f[C,T] = [0.07689725,0.9231027] vs [0.3271,0.6729], chisq 803.9975
## Mismatched frequencies for 'X:31457752' f[A,C] = [0.3744124,0.6255876] vs [0.5675,0.4325], chisq 411.1273
## Mismatched frequencies for 'X:31496350' f[C,T] = [0.06380121,0.9361988] vs [0.3218,0.6782], chisq 864.4255
## Mismatched frequencies for 'X:31511939' f[C,T] = [0.06010745,0.9398925] vs [0.316,0.684], chisq 859.6984
## Mismatched frequencies for 'X:31620288' f[C,T] = [0.0648086,0.9351914] vs [0.3217,0.6783], chisq 857.0321
## Mismatched frequencies for 'X:31710873' f[G,C] = [0.01141706,0.988583] vs [0.2876,0.7124], chisq 1069.814
## Mismatched frequencies for 'X:31774258' f[G,T] = [0.3425117,0.6574882] vs [0.5194,0.4806], chisq 341.4358
## Mismatched frequencies for 'X:31896408' f[C,T] = [0.1087979,0.8912022] vs [0.3576,0.6424], chisq 756.0866
## Mismatched frequencies for 'X:32009476' f[A,G] = [0.3861652,0.6138348] vs [0.5653,0.4347], chisq 353.7073
## Mismatched frequencies for 'X:32020257' f[C,T] = [0.1964406,0.8035594] vs [0.4279,0.5721], chisq 604.8297
## Mismatched frequencies for 'X:32027155' f[C,T] = [0.131632,0.868368] vs [0.3817,0.6183], chisq 739.7501
## Mismatched frequencies for 'X:32032570' f[C,T] = [0.07488247,0.9251175] vs [0.3424,0.6576], chisq 897.2516
## Mismatched frequencies for 'X:32036898' f[T,C] = [0.009402284,0.9905977] vs [0.2858,0.7142], chisq 1076.237
## Mismatched frequencies for 'X:32088576' f[T,C] = [0.3022163,0.6977838] vs [0.4976,0.5024], chisq 417.1263
## Mismatched frequencies for 'X:32110463' f[A,T] = [0.3378106,0.6621894] vs [0.5094,0.4906], chisq 321.2919
## Mismatched frequencies for 'X:32128015' f[C,T] = [0.3475487,0.6524513] vs [0.5439,0.4561], chisq 421.9388
## Mismatched frequencies for 'X:32129200' f[A,G] = [0.1903962,0.8096037] vs [0.4267,0.5733], chisq 631.1874
## Mismatched frequencies for 'X:32148441' f[C,T] = [0.1773002,0.8226998] vs [0.4134,0.5866], chisq 637.0972
## Mismatched frequencies for 'X:32179025' f[C,A] = [0.2850907,0.7149093] vs [0.4764,0.5236], chisq 401.8744
## Mismatched frequencies for 'X:32195177' f[G,A] = [0.02887844,0.9711216] vs [0.3009,0.6991], chisq 1005.528
## Mismatched frequencies for 'X:32205011' f[G,A] = [0.07521827,0.9247817] vs [0.3414,0.6586], chisq 889.6241
## Mismatched frequencies for 'X:32206573' f[G,A] = [0.09872398,0.901276] vs [0.3648,0.6352], chisq 857.6353
## Mismatched frequencies for 'X:32212759' f[A,G] = [0.2494963,0.7505037] vs [0.4562,0.5438], chisq 473.282
## Mismatched frequencies for 'X:32213387' f[G,A] = [0.1356615,0.8643385] vs [0.3645,0.6355], chisq 631.9011
## Mismatched frequencies for 'X:32228675' f[G,A] = [0.0967092,0.9032908] vs [0.3424,0.6576], chisq 754.5326
## Mismatched frequencies for 'X:32231056' f[A,G] = [0.1218939,0.8781061] vs [0.3597,0.6403], chisq 687.7189
## Mismatched frequencies for 'X:32234477' f[C,T] = [0.161182,0.838818] vs [0.3823,0.6177], chisq 576.2967
## Mismatched frequencies for 'X:32274117' f[T,C] = [0.3106112,0.6893889] vs [0.4905,0.5095], chisq 353.9462
## Mismatched frequencies for 'X:32315137' f[C,T] = [0.3146407,0.6853593] vs [0.4977,0.5023], chisq 366.1019
## Mismatched frequencies for 'X:32337111' f[T,C] = [0.384822,0.615178] vs [0.5573,0.4427], chisq 326.9926
## Mismatched frequencies for 'X:32371245' f[A,G] = [0.2625923,0.7374077] vs [0.4553,0.5447], chisq 411.303
## Mismatched frequencies for 'X:32397921' f[T,C] = [0.2921424,0.7078576] vs [0.4741,0.5259], chisq 363.7245
## Mismatched frequencies for 'X:32484578' f[C,T] = [0.2793821,0.7206179] vs [0.4541,0.5459], chisq 338.0431
## Mismatched frequencies for 'X:32500485' f[A,G] = [0.304231,0.695769] vs [0.4808,0.5192], chisq 341.7596
## Mismatched frequencies for 'X:32528857' f[C,T] = [0.4311619,0.5688381] vs [0.5978,0.4022], chisq 311.744
## Mismatched frequencies for 'X:32580579' f[C,T] = [0.3196776,0.6803223] vs [0.5205,0.4795], chisq 440.0705
## Mismatched frequencies for 'X:32705004' f[G,A] = [0.2676293,0.7323707] vs [0.4657,0.5343], chisq 432.5606
## Mismatched frequencies for 'X:32828836' f[T,C] = [0.0728677,0.9271323] vs [0.3215,0.6785], chisq 802.0577
## Mismatched frequencies for 'X:32849544' f[A,G] = [0.4496306,0.5503694] vs [0.6273,0.3727], chisq 362.7528
## Mismatched frequencies for 'X:32882441' f[G,A] = [0.1188717,0.8811282] vs [0.3588,0.6412], chisq 701.1318
## Mismatched frequencies for 'X:32889854' f[G,A] = [0.2975151,0.7024849] vs [0.4955,0.5045], chisq 428.4656
## Mismatched frequencies for 'X:32932984' f[A,G] = [0.1853593,0.8146407] vs [0.4043,0.5957], chisq 551.7616
## Mismatched frequencies for 'X:33017099' f[A,G] = [0.01242445,0.9875755] vs [0.2869,0.7131], chisq 1058.055
## Mismatched frequencies for 'X:33067359' f[C,T] = [0.4110141,0.5889859] vs [0.5823,0.4177], chisq 326.1406
## Mismatched frequencies for 'X:33115576' f[C,T] = [0.4378778,0.5621222] vs [0.6041,0.3959], chisq 311.6028
## Mismatched frequencies for 'X:33139806' f[G,A] = [0.1242445,0.8757556] vs [0.3684,0.6316], chisq 716.781
## Mismatched frequencies for 'X:33157071' f[A,G] = [0.1155138,0.8844863] vs [0.3577,0.6423], chisq 715.726
## Mismatched frequencies for 'X:33206502' f[C,T] = [0.1749496,0.8250504] vs [0.426,0.574], chisq 713.5035
## Mismatched frequencies for 'X:33206634' f[T,C] = [0.02955003,0.97045] vs [0.3004,0.6996], chisq 997.7726
## Mismatched frequencies for 'X:33221282' f[A,G] = [0.1205507,0.8794493] vs [0.3734,0.6266], chisq 764.4199
## Mismatched frequencies for 'X:33244129' f[C,A] = [0.1484218,0.8515782] vs [0.4122,0.5878], chisq 797.7791
## Mismatched frequencies for 'X:33284575' f[C,T] = [0.1124916,0.8875084] vs [0.3837,0.6163], chisq 869.8766
## Mismatched frequencies for 'X:33284584' f[C,T] = [0.1121558,0.8878442] vs [0.3855,0.6145], chisq 881.9177
## Mismatched frequencies for 'X:33288229' f[A,G] = [0.3116185,0.6883815] vs [0.5042,0.4958], chisq 404.9054
## Mismatched frequencies for 'X:33315969' f[G,T] = [0.09939557,0.9006044] vs [0.3398,0.6602], chisq 724.9809
## Mismatched frequencies for 'X:33349779' f[G,A] = [0.3391538,0.6608462] vs [0.511,0.489], chisq 322.2373
## Mismatched frequencies for 'X:33518476' f[A,G] = [0.3458697,0.6541303] vs [0.521,0.479], chisq 334.7083
## Mismatched frequencies for 'X:33556867' f[A,G] = [0.3458697,0.6541303] vs [0.5238,0.4762], chisq 345.5502
## Mismatched frequencies for 'X:33611081' f[A,C] = [0.3744124,0.6255876] vs [0.555,0.445], chisq 358.1095
## Mismatched frequencies for 'X:33624416' f[T,A] = [0.2212895,0.7787105] vs [0.4185,0.5815], chisq 441.339
## Mismatched frequencies for 'X:33627520' f[T,C] = [0.3707186,0.6292814] vs [0.5586,0.4414], chisq 388.0067
## Mismatched frequencies for 'X:33708429' f[G,A] = [0.1064473,0.8935527] vs [0.3399,0.6601], chisq 682.8855
## Mismatched frequencies for 'X:33869539' f[G,C] = [0.2333781,0.7666219] vs [0.4359,0.5641], chisq 459.6232
## Mismatched frequencies for 'X:33964770' f[T,G] = [0.2374076,0.7625923] vs [0.436,0.564], chisq 441.8337
## Mismatched frequencies for 'X:34054470' f[T,C] = [0.2901276,0.7098724] vs [0.5087,0.4913], chisq 521.4686
## Mismatched frequencies for 'X:34078535' f[G,A] = [0.1746138,0.8253862] vs [0.4089,0.5911], chisq 629.8391
## Mismatched frequencies for 'X:34111826' f[G,A] = [0.3106112,0.6893889] vs [0.5268,0.4732], chisq 510.119
## Mismatched frequencies for 'X:34145623' f[A,C] = [0.320685,0.679315] vs [0.5232,0.4768], chisq 447.565
## Mismatched frequencies for 'X:34399866' f[T,C] = [0.0486904,0.9513096] vs [0.3038,0.6962], chisq 876.0954
## Mismatched frequencies for 'X:34406677' f[A,G] = [0.2991941,0.7008059] vs [0.4993,0.5007], chisq 437.4497
## Mismatched frequencies for 'X:34660646' f[C,T] = [0.05708529,0.9429147] vs [0.307,0.693], chisq 834.3157
## Mismatched frequencies for 'X:34748579' f[T,C] = [0.08764271,0.9123573] vs [0.3386,0.6614], chisq 792.7861
## Mismatched frequencies for 'X:34937765' f[T,G] = [0.04533244,0.9546676] vs [0.2992,0.7008], chisq 876.1334
## Mismatched frequencies for 'X:34994149' f[T,G] = [0.5211551,0.4788448] vs [0.6819,0.3181], chisq 318.0063
## Mismatched frequencies for 'X:34994353' f[C,A] = [0.2290128,0.7709872] vs [0.4429,0.5571], chisq 510.6773
## Mismatched frequencies for 'X:35017408' f[A,G] = [0.07018133,0.9298187] vs [0.3175,0.6825], chisq 799.5612
## Mismatched frequencies for 'X:35077154' f[T,G] = [0.1336467,0.8663533] vs [0.3569,0.6431], chisq 607.4987
## Mismatched frequencies for 'X:35277294' f[T,C] = [0.1977838,0.8022162] vs [0.4214,0.5786], chisq 567.1241
## Mismatched frequencies for 'X:35345542' f[T,C] = [0.2907992,0.7092008] vs [0.4848,0.5152], chisq 412.296
## Mismatched frequencies for 'X:35447740' f[C,T] = [0.2367361,0.7632639] vs [0.4351,0.5649], chisq 441.077
## Mismatched frequencies for 'X:35559546' f[A,G] = [0.2397582,0.7602418] vs [0.439,0.561], chisq 443.8776
## Mismatched frequencies for 'X:35569588' f[G,T] = [0.2397582,0.7602418] vs [0.4391,0.5609], chisq 444.2975
## Mismatched frequencies for 'X:36327646' f[G,A] = [0.03525856,0.9647414] vs [0.2988,0.7012], chisq 946.7262
## Mismatched frequencies for 'X:36500570' f[A,G] = [0.0322364,0.9677636] vs [0.2983,0.7017], chisq 966.4721
## Mismatched frequencies for 'X:36681986' f[C,A] = [0.8233714,0.1766286] vs [0.9999,1e-04], chisq 5779.786
## Mismatched frequencies for 'X:36865759' f[C,T] = [0.06010745,0.9398925] vs [0.3103,0.6897], chisq 830.512
## Mismatched frequencies for 'X:37228380' f[T,C] = [0.05137676,0.9486232] vs [0.3027,0.6973], chisq 851.7152
## Mismatched frequencies for 'X:37789913' f[T,C] = [0.1417058,0.8582941] vs [0.3849,0.6151], chisq 696.5046
## Mismatched frequencies for 'X:37790643' f[T,C] = [0.1702485,0.8297515] vs [0.4151,0.5849], chisq 684.6177
## Mismatched frequencies for 'X:37801032' f[A,G] = [0.02753526,0.9724647] vs [0.3132,0.6868], chisq 1082.884
## Mismatched frequencies for 'X:38062355' f[G,A] = [0.1450638,0.8549362] vs [0.3743,0.6257], chisq 625.9946
## Mismatched frequencies for 'X:38074516' f[T,G] = [0.2085292,0.7914708] vs [0.4339,0.5661], chisq 570.7116
## Mismatched frequencies for 'X:38106986' f[G,A] = [0.3596374,0.6403627] vs [0.5313,0.4687], chisq 321.9009
## Mismatched frequencies for 'X:38122907' f[G,A] = [0.2991941,0.7008059] vs [0.4824,0.5176], chisq 367.8317
## Mismatched frequencies for 'X:38206682' f[T,G] = [0.2934855,0.7065144] vs [0.4873,0.5127], chisq 411.253
## Mismatched frequencies for 'X:38319270' f[T,C] = [0.04231028,0.9576897] vs [0.3041,0.6959], chisq 923.096
## Mismatched frequencies for 'X:38390074' f[A,G] = [0.04231028,0.9576897] vs [0.3033,0.6967], chisq 918.9145
## Mismatched frequencies for 'X:38540836' f[G,A] = [0.5020148,0.4979852] vs [0.6662,0.3338], chisq 324.2603
## Mismatched frequencies for 'X:38547862' f[G,A] = [0.383143,0.6168569] vs [0.551,0.449], chisq 309.1189
## Mismatched frequencies for 'X:38642822' f[T,C] = [0.03895232,0.9610477] vs [0.3094,0.6906], chisq 975.6643
## Mismatched frequencies for 'X:38667241' f[C,A] = [0.2437878,0.7562122] vs [0.4694,0.5306], chisq 560.9024
## Mismatched frequencies for 'X:38760524' f[T,C] = [0.4751511,0.5248489] vs [0.6433,0.3567], chisq 330.569
## Mismatched frequencies for 'X:38817116' f[T,C] = [0.1803224,0.8196777] vs [0.4147,0.5853], chisq 627.0342
## Mismatched frequencies for 'X:38888659' f[T,C] = [0.09536602,0.904634] vs [0.3441,0.6559], chisq 771.527
## Mismatched frequencies for 'X:38916969' f[T,C] = [0.3572868,0.6427133] vs [0.557,0.443], chisq 438.0348
## Mismatched frequencies for 'X:38923442' f[G,A] = [0.2622566,0.7377434] vs [0.4795,0.5205], chisq 518.066
## Mismatched frequencies for 'X:39056926' f[G,A] = [0.07521827,0.9247817] vs [0.3291,0.6709], chisq 825.2784
## Mismatched frequencies for 'X:39066043' f[C,A] = [0.01511081,0.9848892] vs [0.2907,0.7093], chisq 1057.205
## Mismatched frequencies for 'X:39363581' f[C,T] = [0.371726,0.628274] vs [0.5432,0.4568], chisq 321.8952
## Mismatched frequencies for 'X:39417662' f[C,T] = [0.2595702,0.7404298] vs [0.475,0.525], chisq 510.1827
## Mismatched frequencies for 'X:39603351' f[G,A] = [0.4361988,0.5638012] vs [0.6078,0.3922], chisq 332.9167
## Mismatched frequencies for 'X:39607910' f[T,C] = [0.02619207,0.9738079] vs [0.3094,0.6906], chisq 1072.308
## Mismatched frequencies for 'X:39632673' f[T,G] = [0.1887173,0.8112828] vs [0.434,0.566], chisq 676.7663
## Mismatched frequencies for 'X:39645138' f[A,G] = [0.2679651,0.7320349] vs [0.4926,0.5074], chisq 552.1163
## Mismatched frequencies for 'X:39714302' f[C,T] = [0.4744795,0.5255205] vs [0.6364,0.3636], chisq 304.4368
## Mismatched frequencies for 'X:39723321' f[C,T] = [0.1796508,0.8203492] vs [0.4273,0.5727], chisq 693.4411
## Mismatched frequencies for 'X:39734948' f[A,G] = [0.01712559,0.9828744] vs [0.2899,0.7101], chisq 1037.107
## Mismatched frequencies for 'X:39752946' f[T,C] = [0.2770316,0.7229685] vs [0.4721,0.5279], chisq 418.4755
## Mismatched frequencies for 'X:39773862' f[A,G] = [0.3804567,0.6195433] vs [0.546,0.454], chisq 300.2558
## Mismatched frequencies for 'X:39947936' f[T,C] = [0.2051713,0.7948288] vs [0.4229,0.5771], chisq 536.7959
## Mismatched frequencies for 'X:40024182' f[A,G] = [0.03895232,0.9610477] vs [0.3021,0.6979], chisq 936.9806
## Mismatched frequencies for 'X:40064033' f[G,A] = [0.2975151,0.7024849] vs [0.4653,0.5347], chisq 310.1252
## Mismatched frequencies for 'X:40091933' f[C,T] = [0.0322364,0.9677636] vs [0.3076,0.6924], chisq 1016.172
## Mismatched frequencies for 'X:40102612' f[A,G] = [0.5308932,0.4691068] vs [0.6962,0.3038], chisq 343.885
## Mismatched frequencies for 'X:40109672' f[C,T] = [0.2316991,0.7683009] vs [0.4625,0.5375], chisq 588.8559
## Mismatched frequencies for 'X:40125952' f[G,A] = [0.3139691,0.6860309] vs [0.5408,0.4592], chisq 562.4731
## Mismatched frequencies for 'X:40127733' f[T,C] = [0.07857622,0.9214238] vs [0.3498,0.6502], chisq 911.7969
## Mismatched frequencies for 'X:40242991' f[C,T] = [0.0809268,0.9190732] vs [0.3653,0.6347], chisq 981.0732
## Mismatched frequencies for 'X:40251306' f[G,A] = [0.1094694,0.8905306] vs [0.3847,0.6153], chisq 895.1562
## Mismatched frequencies for 'X:40351243' f[G,A] = [0.3230356,0.6769644] vs [0.5258,0.4742], chisq 448.7373
## Mismatched frequencies for 'X:40428664' f[T,G] = [0.07488247,0.9251175] vs [0.3396,0.6604], chisq 882.3402
## Mismatched frequencies for 'X:40429910' f[A,G] = [0.1000672,0.8999329] vs [0.3732,0.6268], chisq 894.2035
## Mismatched frequencies for 'X:40473966' f[G,A] = [0.08361317,0.9163868] vs [0.3452,0.6548], chisq 853.2936
## Mismatched frequencies for 'X:40492463' f[T,C] = [0.2031565,0.7968435] vs [0.4314,0.5686], chisq 586.4982
## Mismatched frequencies for 'X:40556492' f[C,G] = [0.2918066,0.7081934] vs [0.4767,0.5233], chisq 375.2717
## Mismatched frequencies for 'X:40804609' f[G,A] = [0.1598388,0.8401612] vs [0.4138,0.5862], chisq 737.8666
## Mismatched frequencies for 'X:40812646' f[A,C] = [0.278039,0.721961] vs [0.5167,0.4833], chisq 621.5239
## Mismatched frequencies for 'X:40856473' f[G,A] = [0.2353929,0.7646071] vs [0.4461,0.5539], chisq 494.5752
## Mismatched frequencies for 'X:40861569' f[C,T] = [0.5070517,0.4929483] vs [0.6751,0.3249], chisq 343.7725
## Mismatched frequencies for 'X:40947596' f[T,C] = [0.4301545,0.5698456] vs [0.5989,0.4011], chisq 319.8835
## Mismatched frequencies for 'X:41020340' f[G,A] = [0.1329751,0.8670248] vs [0.3619,0.6381], chisq 634.6624
## Mismatched frequencies for 'X:41087820' f[A,G] = [0.3398254,0.6601746] vs [0.5197,0.4803], chisq 353.0624
## Mismatched frequencies for 'X:41123251' f[T,C] = [0.3952317,0.6047683] vs [0.5673,0.4327], chisq 326.7046
## Mismatched frequencies for 'X:41128493' f[C,T] = [0.2733378,0.7266622] vs [0.4777,0.5223], chisq 458.5544
## Mismatched frequencies for 'X:41252835' f[A,G] = [0.2199463,0.7800537] vs [0.4367,0.5633], chisq 526.6304
## Mismatched frequencies for 'X:41282288' f[T,C] = [0.2854265,0.7145736] vs [0.4905,0.5095], chisq 460.19
## Mismatched frequencies for 'X:41292544' f[A,G] = [0.4089993,0.5910007] vs [0.5759,0.4241], chisq 308.6699
## Mismatched frequencies for 'X:41329275' f[C,A] = [0.1548019,0.8451981] vs [0.3854,0.6146], chisq 625.0902
## Mismatched frequencies for 'X:41493905' f[C,T] = [0.1175285,0.8824714] vs [0.3715,0.6285], chisq 773.2323
## Mismatched frequencies for 'X:41652445' f[C,T] = [0.09939557,0.9006044] vs [0.3467,0.6533], chisq 759.3709
## Mismatched frequencies for 'X:41827452' f[G,A] = [0.04499664,0.9550034] vs [0.3064,0.6936], chisq 915.8016
## Mismatched frequencies for 'X:41947128' f[C,T] = [0.3122901,0.6877099] vs [0.4987,0.5013], chisq 379.5886
## Mismatched frequencies for 'X:41955510' f[T,C] = [0.3408328,0.6591672] vs [0.5357,0.4643], chisq 414.9562
## Mismatched frequencies for 'X:41967720' f[A,G] = [0.2038281,0.7961719] vs [0.4439,0.5561], chisq 643.8465
## Mismatched frequencies for 'X:42576676' f[G,A] = [0.4388852,0.5611149] vs [0.6078,0.3922], chisq 322.6313
## Mismatched frequencies for 'X:42636362' f[A,C] = [0.09066488,0.9093351] vs [0.3337,0.6663], chisq 748.9263
## Mismatched frequencies for 'X:43029509' f[G,A] = [0.1373405,0.8626595] vs [0.385,0.615], chisq 722.5498
## Mismatched frequencies for 'X:43065724' f[A,G] = [0.3186702,0.6813297] vs [0.5295,0.4705], chisq 485.2667
## Mismatched frequencies for 'X:43237249' f[A,G] = [0.02619207,0.9738079] vs [0.3073,0.6927], chisq 1060.772
## Mismatched frequencies for 'X:43323159' f[A,G] = [0.3132975,0.6867025] vs [0.5255,0.4745], chisq 491.449
## Mismatched frequencies for 'X:43372713' f[G,A] = [0.2458026,0.7541974] vs [0.4836,0.5164], chisq 620.2898
## Mismatched frequencies for 'X:43410668' f[A,G] = [0.2515111,0.7484889] vs [0.4829,0.5171], chisq 587.3351
## Mismatched frequencies for 'X:43493189' f[C,T] = [0.273002,0.726998] vs [0.501,0.499], chisq 567.95
## Mismatched frequencies for 'X:43517364' f[A,G] = [0.2726662,0.7273338] vs [0.4993,0.5007], chisq 561.3089
## Mismatched frequencies for 'X:43599521' f[T,C] = [0.3287441,0.6712559] vs [0.5331,0.4669], chisq 456.1322
## Mismatched frequencies for 'X:43603391' f[T,C] = [0.2860981,0.7139019] vs [0.4998,0.5002], chisq 498.9593
## Mismatched frequencies for 'X:43612708' f[G,A] = [0.3989255,0.6010746] vs [0.585,0.415], chisq 385.2032
## Mismatched frequencies for 'X:43742659' f[A,G] = [0.03055742,0.9694426] vs [0.3006,0.6994], chisq 991.2444
## Mismatched frequencies for 'X:43816206' f[T,C] = [0.4573539,0.542646] vs [0.6304,0.3696], chisq 345.2774
## Mismatched frequencies for 'X:43822924' f[T,C] = [0.320685,0.679315] vs [0.5123,0.4877], chisq 400.6446
## Mismatched frequencies for 'X:43877475' f[A,G] = [0.3690396,0.6309604] vs [0.5452,0.4548], chisq 339.8601
## Mismatched frequencies for 'X:43947707' f[G,T] = [0.1121558,0.8878442] vs [0.3592,0.6408], chisq 743.5497
## Mismatched frequencies for 'X:43949016' f[C,T] = [0.2689725,0.7310275] vs [0.4697,0.5303], chisq 443.5785
## Mismatched frequencies for 'X:43980175' f[C,T] = [0.08999328,0.9100067] vs [0.3307,0.6693], chisq 738.2654
## Mismatched frequencies for 'X:44006222' f[G,A] = [0.01208865,0.9879113] vs [0.2857,0.7143], chisq 1054.301
## Mismatched frequencies for 'X:44079458' f[C,T] = [0.3176629,0.6823372] vs [0.4877,0.5123], chisq 316.3678
## Mismatched frequencies for 'X:44226057' f[T,C] = [0.04801881,0.9519812] vs [0.3077,0.6923], chisq 901.0264
## Mismatched frequencies for 'X:44249895' f[A,G] = [0.04633983,0.9536602] vs [0.3088,0.6912], chisq 918.7477
## Mismatched frequencies for 'X:44281368' f[G,A] = [0.3962391,0.6037609] vs [0.5653,0.4347], chisq 315.1527
## Mismatched frequencies for 'X:44440039' f[A,G] = [0.2699799,0.7300202] vs [0.4697,0.5303], chisq 439.1232
## Mismatched frequencies for 'X:44440251' f[T,C] = [0.4415715,0.5584285] vs [0.6193,0.3807], chisq 360.3602
## Mismatched frequencies for 'X:44472620' f[G,A] = [0.4492948,0.5507052] vs [0.6235,0.3765], chisq 347.6078
## Mismatched frequencies for 'X:44474453' f[C,A] = [0.03794493,0.9620551] vs [0.3074,0.6926], chisq 972.4212
## Mismatched frequencies for 'X:44476910' f[A,G] = [0.3666891,0.633311] vs [0.5545,0.4455], chisq 387.1949
## Mismatched frequencies for 'X:44493610' f[C,G] = [0.113499,0.886501] vs [0.3584,0.6416], chisq 731.3602
## Mismatched frequencies for 'X:44527255' f[T,C] = [0.2337139,0.7662861] vs [0.4487,0.5513], chisq 514.2034
## Mismatched frequencies for 'X:44562672' f[T,C] = [0.350235,0.649765] vs [0.548,0.452], chisq 428.4385
## Mismatched frequencies for 'X:44635630' f[A,G] = [0.4157152,0.5842848] vs [0.593,0.407], chisq 351.5177
## Mismatched frequencies for 'X:44811118' f[T,C] = [0.03828073,0.9617193] vs [0.3025,0.6975], chisq 943.9891
## Mismatched frequencies for 'X:45040802' f[G,A] = [0.19409,0.80591] vs [0.4162,0.5838], chisq 561.8782
## Mismatched frequencies for 'X:45153245' f[T,G] = [0.3008731,0.699127] vs [0.5075,0.4925], chisq 466.0344
## Mismatched frequencies for 'X:45244798' f[A,G] = [0.01779718,0.9822028] vs [0.2921,0.7079], chisq 1043.637
## Mismatched frequencies for 'X:45437079' f[A,G] = [0.04969778,0.9503022] vs [0.3143,0.6857], chisq 923.686
## Mismatched frequencies for 'X:45518452' f[A,G] = [0.04398926,0.9560108] vs [0.3036,0.6964], chisq 908.4135
## Mismatched frequencies for 'X:45527650' f[T,C] = [0.1323036,0.8676965] vs [0.3744,0.6256], chisq 699.0726
## Mismatched frequencies for 'X:45549899' f[C,T] = [0.1336467,0.8663533] vs [0.3813,0.6187], chisq 725.7053
## Mismatched frequencies for 'X:45552235' f[C,G] = [0.195769,0.804231] vs [0.4446,0.5554], chisq 691.701
## Mismatched frequencies for 'X:45573361' f[T,C] = [0.144728,0.855272] vs [0.4123,0.5877], chisq 821.0583
## Mismatched frequencies for 'X:45586467' f[G,A] = [0.09939557,0.9006044] vs [0.3679,0.6321], chisq 869.8689
## Mismatched frequencies for 'X:45621472' f[G,A] = [0.2578912,0.7421088] vs [0.4803,0.5197], chisq 542.9331
## Mismatched frequencies for 'X:45795548' f[G,A] = [0.3280725,0.6719274] vs [0.5057,0.4943], chisq 344.3842
## Mismatched frequencies for 'X:45806699' f[C,T] = [0.0721961,0.9278039] vs [0.3372,0.6628], chisq 887.9031
## Mismatched frequencies for 'X:45810458' f[C,A] = [0.3431833,0.6568167] vs [0.5415,0.4585], chisq 430.1964
## Mismatched frequencies for 'X:45827482' f[T,C] = [0.1709201,0.8290799] vs [0.4223,0.5777], chisq 717.5303
## Mismatched frequencies for 'X:45830307' f[C,A] = [0.02149093,0.9785091] vs [0.2946,0.7054], chisq 1028.328
## Mismatched frequencies for 'X:45873682' f[T,C] = [0.44728,0.5527199] vs [0.6172,0.3828], chisq 328.9789
## Mismatched frequencies for 'X:45898681' f[C,T] = [0.1574882,0.8425118] vs [0.3931,0.6069], chisq 647.2747
## Mismatched frequencies for 'X:46059303' f[C,T] = [0.3304231,0.6695769] vs [0.5342,0.4658], chisq 453.6201
## Mismatched frequencies for 'X:46097094' f[T,C] = [0.01477502,0.985225] vs [0.2906,0.7094], chisq 1059.316
## Mismatched frequencies for 'X:46254035' f[C,T] = [0.342176,0.657824] vs [0.5163,0.4837], chisq 330.8244
## Mismatched frequencies for 'X:46285456' f[G,T] = [0.1470786,0.8529214] vs [0.4033,0.5967], chisq 758.7386
## Mismatched frequencies for 'X:46304404' f[C,T] = [0.3327737,0.6672263] vs [0.5095,0.4905], chisq 340.8219
## Mismatched frequencies for 'X:46598739' f[T,G] = [0.2790463,0.7209536] vs [0.4913,0.5087], chisq 492.9582
## Mismatched frequencies for 'X:46603628' f[C,T] = [0.4348556,0.5651444] vs [0.6152,0.3848], chisq 369.6811
## Mismatched frequencies for 'X:46941458' f[G,A] = [0.2588986,0.7411014] vs [0.4656,0.5344], chisq 471.2401
## Mismatched frequencies for 'X:46960120' f[C,T] = [0.3190061,0.680994] vs [0.534,0.466], chisq 504.8581
## Mismatched frequencies for 'X:47036593' f[G,A] = [0.3364674,0.6635326] vs [0.5417,0.4583], chisq 460.6895
## Mismatched frequencies for 'X:47086347' f[G,A] = [0.3149765,0.6850235] vs [0.5172,0.4828], chisq 446.2092
## Mismatched frequencies for 'X:47132056' f[A,G] = [0.07320349,0.9267965] vs [0.3362,0.6638], chisq 875.7543
## Mismatched frequencies for 'X:47172983' f[T,C] = [0.03492277,0.9650772] vs [0.3051,0.6949], chisq 982.5701
## Mismatched frequencies for 'X:47200127' f[C,A] = [0.4482874,0.5517126] vs [0.6251,0.3749], chisq 358.5468
## Mismatched frequencies for 'X:47374329' f[A,G] = [0.3626595,0.6373405] vs [0.539,0.461], chisq 340.0923
## Mismatched frequencies for 'X:47524211' f[C,T] = [0.04969778,0.9503022] vs [0.3109,0.6891], chisq 905.8169
## Mismatched frequencies for 'X:47608676' f[G,A] = [0.2508395,0.7491605] vs [0.4449,0.5551], chisq 419.4671
## Mismatched frequencies for 'X:47925966' f[A,C] = [0.0319006,0.9680994] vs [0.3054,0.6946], chisq 1006.837
## Mismatched frequencies for 'X:48116655' f[A,T] = [0.0003357958,0.9996642] vs [0.9999,1e-04], chisq 35392.86
## Mismatched frequencies for 'X:48150199' f[G,A] = [0.448959,0.5510409] vs [0.6491,0.3509], chisq 469.9629
## Mismatched frequencies for 'X:48456223' f[G,T] = [0.09167226,0.9083278] vs [0.3511,0.6489], chisq 831.2363
## Mismatched frequencies for 'X:48459962' f[G,A] = [0.09167226,0.9083278] vs [0.3512,0.6488], chisq 831.7593
## Mismatched frequencies for 'X:48486345' f[A,G] = [0.04768301,0.952317] vs [0.3123,0.6877], chisq 927.5406
## Mismatched frequencies for 'X:49164880' f[T,C] = [0.4019476,0.5980524] vs [0.583,0.417], chisq 364.3688
## Mismatched frequencies for 'X:49173299' f[C,G] = [0.3982539,0.6017461] vs [0.5823,0.4177], chisq 376.3219
## Mismatched frequencies for 'X:49370787' f[A,T] = [0.3992612,0.6007388] vs [0.5823,0.4177], chisq 372.2307
## Mismatched frequencies for 'X:49370901' f[G,A] = [0.3985897,0.6014103] vs [0.5823,0.4177], chisq 374.9557
## Mismatched frequencies for 'X:49401262' f[G,T] = [0.4006044,0.5993956] vs [0.5821,0.4179], chisq 365.9666
## Mismatched frequencies for 'X:49486929' f[A,T] = [0.3478845,0.6521155] vs [0.5393,0.4607], chisq 400.6517
## Mismatched frequencies for 'X:49697654' f[G,A] = [0.2343855,0.7656145] vs [0.4465,0.5535], chisq 501.1218
## Mismatched frequencies for 'X:49891340' f[A,G] = [0.03727334,0.9627267] vs [0.3,0.7], chisq 938.2326
## Mismatched frequencies for 'X:50058276' f[G,A] = [0.419409,0.580591] vs [0.6008,0.3992], chisq 369.8402
## Mismatched frequencies for 'X:50072940' f[A,G] = [0.1752854,0.8247146] vs [0.4164,0.5836], chisq 662.9424
## Mismatched frequencies for 'X:50108144' f[G,A] = [0.06917394,0.9308261] vs [0.3198,0.6802], chisq 817.8832
## Mismatched frequencies for 'X:50295570' f[A,G] = [0.1309604,0.8690396] vs [0.3808,0.6192], chisq 739.1887
## Mismatched frequencies for 'X:50324903' f[C,T] = [0.2753526,0.7246474] vs [0.4887,0.5113], chisq 498.3518
## Mismatched frequencies for 'X:50344695' f[A,G] = [0.2612491,0.7387508] vs [0.4897,0.5103], chisq 571.445
## Mismatched frequencies for 'X:50346131' f[C,T] = [0.2770316,0.7229685] vs [0.5041,0.4959], chisq 563.0909
## Mismatched frequencies for 'X:50379075' f[T,G] = [0.3448623,0.6551377] vs [0.5364,0.4636], chisq 400.9596
## Mismatched frequencies for 'X:50567071' f[A,G] = [0.3969107,0.6030893] vs [0.5644,0.4356], chisq 309.2232
## Mismatched frequencies for 'X:50604639' f[A,G] = [0.3885158,0.6114842] vs [0.5571,0.4429], chisq 312.409
## Mismatched frequencies for 'X:50610985' f[C,T] = [0.07051712,0.9294829] vs [0.3416,0.6584], chisq 923.0122
## Mismatched frequencies for 'X:50621872' f[T,C] = [0.1813298,0.8186703] vs [0.4309,0.5691], chisq 702.4031
## Mismatched frequencies for 'X:50768860' f[T,C] = [0.03559436,0.9644057] vs [0.315,0.685], chisq 1031.059
## Mismatched frequencies for 'X:50775077' f[G,A] = [0,1] vs [0.895,0.105], chisq 14791.72
## Mismatched frequencies for 'X:50795757' f[C,T] = [0.001007387,0.9989926] vs [0.2899,0.7101], chisq 1167.068
## Mismatched frequencies for 'X:50830238' f[C,T] = [0.3146407,0.6853593] vs [0.5235,0.4765], chisq 476.041
## Mismatched frequencies for 'X:50844180' f[T,C] = [0.01108126,0.9889187] vs [0.2912,0.7088], chisq 1091.933
## Mismatched frequencies for 'X:50919105' f[A,G] = [0.1964406,0.8035594] vs [0.4145,0.5855], chisq 542.2065
## Mismatched frequencies for 'X:50937700' f[G,A] = [0.1977838,0.8022162] vs [0.4204,0.5796], chisq 562.4824
## Mismatched frequencies for 'X:50965028' f[C,T] = [0.2192747,0.7807253] vs [0.436,0.564], chisq 526.7396
## Mismatched frequencies for 'X:51190145' f[G,A] = [0.287777,0.712223] vs [0.4821,0.5179], chisq 413.9646
## Mismatched frequencies for 'X:51241672' f[C,T] = [0.3646743,0.6353257] vs [0.5312,0.4688], chisq 302.9373
## Mismatched frequencies for 'X:51245461' f[C,A] = [0.3646743,0.6353257] vs [0.5315,0.4685], chisq 304.0414
## Mismatched frequencies for 'X:51299747' f[T,G] = [0.2112156,0.7887844] vs [0.4287,0.5713], chisq 533.2087
## Mismatched frequencies for 'X:51397726' f[G,A] = [0.3478845,0.6521155] vs [0.5176,0.4824], chisq 314.2952
## Mismatched frequencies for 'X:51475161' f[G,A] = [0.3237072,0.6762928] vs [0.495,0.505], chisq 320.6322
## Mismatched frequencies for 'X:51697194' f[C,T] = [0.3213566,0.6786434] vs [0.4965,0.5035], chisq 335.1502
## Mismatched frequencies for 'X:51779102' f[A,G] = [0.3210208,0.6789792] vs [0.4945,0.5055], chisq 328.905
## Mismatched frequencies for 'X:51994546' f[G,C] = [0.3925453,0.6074547] vs [0.5649,0.4351], chisq 327.4616
## Mismatched frequencies for 'X:52833945' f[T,C] = [0.02316991,0.9768301] vs [0.3012,0.6988], chisq 1050.916
## Mismatched frequencies for 'X:53017633' f[G,A] = [0.1749496,0.8250504] vs [0.4086,0.5914], chisq 626.5692
## Mismatched frequencies for 'X:53032280' f[A,G] = [0.2095366,0.7904634] vs [0.4244,0.5756], chisq 522.0469
## Mismatched frequencies for 'X:53033559' f[T,C] = [0.03156481,0.9684352] vs [0.2937,0.7063], chisq 947.3011
## Mismatched frequencies for 'X:53055916' f[A,G] = [0.1453996,0.8546004] vs [0.3835,0.6165], chisq 668.3964
## Mismatched frequencies for 'X:53124816' f[A,G] = [0.1910678,0.8089322] vs [0.4312,0.5688], chisq 649.7563
## Mismatched frequencies for 'X:53145835' f[C,G] = [0.1773002,0.8226998] vs [0.4202,0.5798], chisq 670.7072
## Mismatched frequencies for 'X:53238854' f[T,C] = [0.02686367,0.9731363] vs [0.3135,0.6865], chisq 1089.774
## Mismatched frequencies for 'X:53255291' f[T,G] = [0.02350571,0.9764943] vs [0.3009,0.6991], chisq 1046.687
## Mismatched frequencies for 'X:53291886' f[T,G] = [0.02350571,0.9764943] vs [0.2998,0.7002], chisq 1040.734
## Mismatched frequencies for 'X:53297928' f[C,T] = [0.0245131,0.9754869] vs [0.3018,0.6982], chisq 1043.777
## Mismatched frequencies for 'X:53306207' f[T,C] = [0.06883815,0.9311619] vs [0.3416,0.6584], chisq 934.7012
## Mismatched frequencies for 'X:53471786' f[A,G] = [0.4093351,0.5906649] vs [0.5888,0.4112], chisq 359.2362
## Mismatched frequencies for 'X:53843563' f[A,G] = [0.5157824,0.4842176] vs [0.6803,0.3197], chisq 332.1469
## Mismatched frequencies for 'X:53904405' f[G,T] = [0.2034923,0.7965077] vs [0.4341,0.5659], chisq 597.6435
## Mismatched frequencies for 'X:54460107' f[C,T] = [0.143049,0.856951] vs [0.3737,0.6263], chisq 634.3242
## Mismatched frequencies for 'X:54888768' f[G,A] = [0.3253862,0.6746138] vs [0.5386,0.4614], chisq 496.8783
## Mismatched frequencies for 'X:54918028' f[C,T] = [0.3280725,0.6719274] vs [0.5401,0.4599], chisq 491.4997
## Mismatched frequencies for 'X:54953647' f[G,A] = [0.3300873,0.6699127] vs [0.5418,0.4582], chisq 490.1985
## Mismatched frequencies for 'X:55116466' f[C,G] = [0.002686367,0.9973136] vs [0.2856,0.7144], chisq 1129.652
## Mismatched frequencies for 'X:55208161' f[G,A] = [0.4351914,0.5648086] vs [0.6146,0.3854], chisq 365.6959
## Mismatched frequencies for 'X:55287820' f[T,G] = [0.0245131,0.9754869] vs [0.3078,0.6922], chisq 1076.554
## Mismatched frequencies for 'X:55289774' f[T,C] = [0.02552048,0.9744795] vs [0.3082,0.6918], chisq 1070.918
## Mismatched frequencies for 'X:55310295' f[A,C] = [0.02518469,0.9748153] vs [0.3084,0.6916], chisq 1074.629
## Mismatched frequencies for 'X:55354496' f[C,T] = [0.3337811,0.6662189] vs [0.5531,0.4469], chisq 527.377
## Mismatched frequencies for 'X:55433100' f[C,T] = [0.02048355,0.9795164] vs [0.3069,0.6931], chisq 1103.205
## Mismatched frequencies for 'X:55651001' f[T,C] = [0.02216252,0.9778375] vs [0.3077,0.6923], chisq 1094.4
## Mismatched frequencies for 'X:55778139' f[T,C] = [0.2766958,0.7233042] vs [0.5209,0.4791], chisq 650.7016
## Mismatched frequencies for 'X:55852696' f[G,T] = [0.2756884,0.7243116] vs [0.5204,0.4796], chisq 653.408
## Mismatched frequencies for 'X:55853321' f[G,A] = [0.2766958,0.7233042] vs [0.5204,0.4796], chisq 648.0393
## Mismatched frequencies for 'X:55862240' f[A,G] = [0.02316991,0.9768301] vs [0.3075,0.6925], chisq 1085.392
## Mismatched frequencies for 'X:55920595' f[T,C] = [0.02283412,0.9771659] vs [0.307,0.693], chisq 1085.264
## Mismatched frequencies for 'X:55936822' f[A,G] = [0.2854265,0.7145736] vs [0.5051,0.4949], chisq 526.9152
## Mismatched frequencies for 'X:55960724' f[T,C] = [0.1349899,0.8650101] vs [0.3979,0.6021], chisq 803.7911
## Mismatched frequencies for 'X:56152985' f[G,A] = [0.2494963,0.7505037] vs [0.5021,0.4979], chisq 697.2527
## Mismatched frequencies for 'X:56226649' f[G,A] = [0.2431162,0.7568838] vs [0.495,0.505], chisq 694.1708
## Mismatched frequencies for 'X:56345127' f[G,A] = [0.2276696,0.7723304] vs [0.471,0.529], chisq 652.4325
## Mismatched frequencies for 'X:56428273' f[C,T] = [0.1380121,0.8619879] vs [0.401,0.599], chisq 801.6743
## Mismatched frequencies for 'X:56495976' f[C,T] = [0.2568838,0.7431162] vs [0.5074,0.4926], chisq 685.2838
## Mismatched frequencies for 'X:56544404' f[G,A] = [0.01746138,0.9825386] vs [0.2983,0.7017], chisq 1079.807
## Mismatched frequencies for 'X:56574856' f[A,G] = [0.01712559,0.9828744] vs [0.303,0.697], chisq 1108.261
## Mismatched frequencies for 'X:56640134' f[T,C] = [0.2454668,0.7545332] vs [0.4976,0.5024], chisq 695.1886
## Mismatched frequencies for 'X:56681198' f[T,G] = [0.09503022,0.9049698] vs [0.348,0.652], chisq 793.5275
## Mismatched frequencies for 'X:56847280' f[G,A] = [0.1813298,0.8186703] vs [0.4452,0.5548], chisq 778.1641
## Mismatched frequencies for 'X:56870961' f[C,T] = [0.1813298,0.8186703] vs [0.4447,0.5553], chisq 775.4424
## Mismatched frequencies for 'X:57008216' f[C,T] = [0.2276696,0.7723304] vs [0.4875,0.5125], chisq 740.1288
## Mismatched frequencies for 'X:57010138' f[C,T] = [0.2098724,0.7901276] vs [0.4643,0.5357], chisq 715.6483
## Mismatched frequencies for 'X:57204184' f[A,C] = [0.02854264,0.9714574] vs [0.2976,0.7024], chisq 990.4618
## Mismatched frequencies for 'X:57329089' f[G,A] = [0.2310275,0.7689725] vs [0.4893,0.5107], chisq 730.9012
## Mismatched frequencies for 'X:58282545' f[T,G] = [0.02283412,0.9771659] vs [0.3039,0.6961], chisq 1068.24
## Mismatched frequencies for 'X:58483247' f[G,A] = [0.07958361,0.9204164] vs [0.3194,0.6806], chisq 748.1235
## Mismatched frequencies for 'X:62059511' f[C,T] = [0.02149093,0.9785091] vs [0.2989,0.7011], chisq 1051.487
## Mismatched frequencies for 'X:63029564' f[G,T] = [0.02719946,0.9728005] vs [0.3045,0.6955], chisq 1037.742
## Mismatched frequencies for 'X:63562254' f[C,A] = [0.01443922,0.9855608] vs [0.2912,0.7088], chisq 1065.199
## Mismatched frequencies for 'X:63688588' f[A,G] = [0.04533244,0.9546676] vs [0.3098,0.6902], chisq 931.2442
## Mismatched frequencies for 'X:63920087' f[C,G] = [0.02887844,0.9711216] vs [0.3043,0.6957], chisq 1023.82
## Mismatched frequencies for 'X:64041387' f[A,G] = [0.1715917,0.8284083] vs [0.4044,0.5956], chisq 624.5155
## Mismatched frequencies for 'X:64115622' f[C,T] = [0.1715917,0.8284083] vs [0.3999,0.6001], chisq 603.0679
## Mismatched frequencies for 'X:64978060' f[T,C] = [0.03895232,0.9610477] vs [0.3086,0.6914], chisq 971.3882
## Mismatched frequencies for 'X:65328292' f[G,A] = [0.1376763,0.8623237] vs [0.3855,0.6145], chisq 723.0967
## Mismatched frequencies for 'X:65420609' f[A,G] = [0.07152452,0.9284755] vs [0.3183,0.6817], chisq 794.7463
## Mismatched frequencies for 'X:65537415' f[C,T] = [0.2444594,0.7555406] vs [0.4499,0.5501], chisq 469.0317
## Mismatched frequencies for 'X:65563508' f[A,C] = [0.2008059,0.7991941] vs [0.4205,0.5795], chisq 547.6578
## Mismatched frequencies for 'X:65606556' f[C,G] = [0.2081934,0.7918066] vs [0.4276,0.5724], chisq 543.1867
## Mismatched frequencies for 'X:65606693' f[T,A] = [0.2028207,0.7971793] vs [0.4222,0.5778], chisq 545.3293
## Mismatched frequencies for 'X:65632779' f[A,G] = [0.2014775,0.7985225] vs [0.4221,0.5779], chisq 551.6176
## Mismatched frequencies for 'X:65698694' f[G,A] = [0.2125588,0.7874412] vs [0.4316,0.5684], chisq 539.7803
## Mismatched frequencies for 'X:65810074' f[T,C] = [0.205507,0.794493] vs [0.4291,0.5709], chisq 563.6294
## Mismatched frequencies for 'X:65824986' f[C,T] = [0.2024849,0.7975151] vs [0.427,0.573], chisq 569.2181
## Mismatched frequencies for 'X:65998455' f[A,G] = [0.1524513,0.8475487] vs [0.3981,0.6019], chisq 700.4944
## Mismatched frequencies for 'X:66136420' f[C,T] = [0.1501007,0.8498992] vs [0.3972,0.6028], chisq 709.551
## Mismatched frequencies for 'X:66170500' f[G,A] = [0.1531229,0.8468771] vs [0.3982,0.6018], chisq 697.1305
## Mismatched frequencies for 'X:66335096' f[A,G] = [0.1531229,0.8468771] vs [0.3977,0.6023], chisq 694.621
## Mismatched frequencies for 'X:66405249' f[C,T] = [0.2683009,0.7316991] vs [0.4896,0.5104], chisq 536.1635
## Mismatched frequencies for 'X:66481800' f[C,A] = [0.1746138,0.8253862] vs [0.4105,0.5895], chisq 637.6059
## Mismatched frequencies for 'X:66510984' f[G,A] = [0.1840161,0.8159839] vs [0.415,0.585], chisq 608.6952
## Mismatched frequencies for 'X:66875756' f[T,C] = [0.1574882,0.8425118] vs [0.3968,0.6032], chisq 665.3538
## Mismatched frequencies for 'X:67003584' f[C,A] = [0.1944258,0.8055742] vs [0.4295,0.5705], chisq 623.2607
## Mismatched frequencies for 'X:67021550' f[C,T] = [0.1930826,0.8069174] vs [0.4284,0.5716], chisq 625.0768
## Mismatched frequencies for 'X:67050113' f[G,A] = [0.19409,0.80591] vs [0.4286,0.5714], chisq 620.6695
## Mismatched frequencies for 'X:67281956' f[T,G] = [0.07320349,0.9267965] vs [0.3417,0.6583], chisq 905.005
## Mismatched frequencies for 'X:67319294' f[C,G] = [0.3875084,0.6124916] vs [0.5613,0.4387], chisq 332.459
## Mismatched frequencies for 'X:67422048' f[G,C] = [0.08797851,0.9120215] vs [0.345,0.655], chisq 823.5252
## Mismatched frequencies for 'X:67431814' f[A,G] = [0.2280054,0.7719947] vs [0.4456,0.5544], chisq 527.7719
## Mismatched frequencies for 'X:67432612' f[T,C] = [0.08428475,0.9157152] vs [0.3361,0.6639], chisq 801.7134
## Mismatched frequencies for 'X:67625009' f[C,A] = [0.2041639,0.7958361] vs [0.4345,0.5655], chisq 596.06
## Mismatched frequencies for 'X:67627600' f[A,G] = [0.09503022,0.9049698] vs [0.3633,0.6367], chisq 873.9067
## Mismatched frequencies for 'X:67645007' f[G,A] = [0.09905977,0.9009402] vs [0.376,0.624], chisq 916.341
## Mismatched frequencies for 'X:67707597' f[T,C] = [0.07118872,0.9288113] vs [0.354,0.646], chisq 986.4138
## Mismatched frequencies for 'X:67891779' f[T,G] = [0.1138348,0.8861652] vs [0.3572,0.6428], chisq 723.3432
## Mismatched frequencies for 'X:67977850' f[T,C] = [0.2098724,0.7901276] vs [0.4162,0.5838], chisq 484.3189
## Mismatched frequencies for 'X:68069525' f[C,T] = [0.3912022,0.6087978] vs [0.5753,0.4247], chisq 375.1776
## Mismatched frequencies for 'X:68101801' f[G,A] = [0.4153794,0.5846205] vs [0.59,0.41], chisq 340.4375
## Mismatched frequencies for 'X:68112281' f[A,C] = [0.1618536,0.8381464] vs [0.3836,0.6164], chisq 578.7307
## Mismatched frequencies for 'X:68210468' f[C,G] = [0.04231028,0.9576897] vs [0.3104,0.6896], chisq 956.3415
## Mismatched frequencies for 'X:68226731' f[A,C] = [0.2061786,0.7938213] vs [0.4315,0.5685], chisq 571.434
## Mismatched frequencies for 'X:68280741' f[T,G] = [0.2169241,0.7830759] vs [0.4179,0.5821], chisq 458.6975
## Mismatched frequencies for 'X:68326037' f[A,G] = [0.02820685,0.9717932] vs [0.2969,0.7031], chisq 989.2792
## Mismatched frequencies for 'X:68354952' f[C,T] = [0.2192747,0.7807253] vs [0.4169,0.5831], chisq 443.7942
## Mismatched frequencies for 'X:68377937' f[A,G] = [0.3505709,0.6494291] vs [0.5368,0.4632], chisq 379.0956
## Mismatched frequencies for 'X:68379039' f[G,T] = [0.2787105,0.7212895] vs [0.4693,0.5307], chisq 399.8342
## Mismatched frequencies for 'X:68414806' f[G,A] = [0.1104768,0.8895232] vs [0.3739,0.6261], chisq 830.1096
## Mismatched frequencies for 'X:68416088' f[T,C] = [0.1067831,0.8932169] vs [0.3704,0.6296], chisq 835.1946
## Mismatched frequencies for 'X:68422477' f[A,G] = [0.1564809,0.8435191] vs [0.4047,0.5953], chisq 710.6226
## Mismatched frequencies for 'X:68447052' f[A,G] = [0.1971122,0.8028879] vs [0.4255,0.5745], chisq 589.8517
## Mismatched frequencies for 'X:68458859' f[C,T] = [0.3116185,0.6883815] vs [0.518,0.482], chisq 464.7479
## Mismatched frequencies for 'X:68477888' f[A,G] = [0.2172599,0.7827401] vs [0.4301,0.5699], chisq 510.0099
## Mismatched frequencies for 'X:68494318' f[A,G] = [0.3969107,0.6030893] vs [0.5688,0.4312], chisq 326.2397
## Mismatched frequencies for 'X:68533584' f[T,C] = [0.07454667,0.9254533] vs [0.3311,0.6689], chisq 840.0592
## Mismatched frequencies for 'X:68538608' f[A,G] = [0.2175957,0.7824043] vs [0.4336,0.5664], chisq 524.0812
## Mismatched frequencies for 'X:68613835' f[C,A] = [0.05809268,0.9419074] vs [0.3345,0.6655], chisq 972.1231
## Mismatched frequencies for 'X:68687450' f[T,C] = [0.1373405,0.8626595] vs [0.3716,0.6284], chisq 656.3525
## Mismatched frequencies for 'X:68690089' f[G,A] = [0.3556078,0.6443922] vs [0.53,0.47], chisq 332.1535
## Mismatched frequencies for 'X:68774475' f[G,A] = [0.4355272,0.5644728] vs [0.6221,0.3779], chisq 397.8393
## Mismatched frequencies for 'X:68792240' f[T,C] = [0.2696441,0.7303559] vs [0.4686,0.5314], chisq 435.9425
## Mismatched frequencies for 'X:69121191' f[G,A] = [0.2182673,0.7817327] vs [0.4238,0.5762], chisq 477.6224
## Mismatched frequencies for 'X:69163134' f[G,A] = [0.03928811,0.9607119] vs [0.3198,0.6802], chisq 1029.567
## Mismatched frequencies for 'X:69286983' f[C,A] = [0.0003357958,0.9996642] vs [0.2876,0.7124], chisq 1160.005
## Mismatched frequencies for 'X:69385475' f[T,C] = [0.1521155,0.8478845] vs [0.4074,0.5926], chisq 750.1151
## Mismatched frequencies for 'X:69415250' f[A,C] = [0.05238415,0.9476159] vs [0.3059,0.6941], chisq 861.0725
## Mismatched frequencies for 'X:69491415' f[T,C] = [0.2387508,0.7612492] vs [0.4568,0.5432], chisq 526.755
## Mismatched frequencies for 'X:69510335' f[C,T] = [0.01544661,0.9845534] vs [0.2853,0.7147], chisq 1025.751
## Mismatched frequencies for 'X:69510961' f[C,T] = [0.08428475,0.9157152] vs [0.3388,0.6612], chisq 815.561
## Mismatched frequencies for 'X:69631496' f[A,C] = [0.439221,0.560779] vs [0.629,0.371], chisq 414.1558
## Mismatched frequencies for 'X:69652762' f[A,G] = [0.04298187,0.9570181] vs [0.317,0.683], chisq 986.8231
## Mismatched frequencies for 'X:69749852' f[A,G] = [0.0402955,0.9597045] vs [0.3174,0.6826], chisq 1008.897
## Mismatched frequencies for 'X:69793817' f[G,A] = [0.4157152,0.5842848] vs [0.6063,0.3937], chisq 409.6842
## Mismatched frequencies for 'X:69928830' f[T,C] = [0.210544,0.789456] vs [0.4403,0.5597], chisq 590.7297
## Mismatched frequencies for 'X:69937612' f[A,G] = [0.2857622,0.7142378] vs [0.5177,0.4823], chisq 586.9803
## Mismatched frequencies for 'X:69994057' f[A,G] = [0.2118872,0.7881128] vs [0.4385,0.5615], chisq 575.2556
## Mismatched frequencies for 'X:70093038' f[C,T] = [0.4701142,0.5298858] vs [0.6399,0.3601], chisq 335.7394
## Mismatched frequencies for 'X:70106555' f[G,C] = [0.04365346,0.9563465] vs [0.3154,0.6846], chisq 973.2617
## Mismatched frequencies for 'X:70119149' f[A,G] = [0.1114842,0.8885158] vs [0.3905,0.6095], chisq 914.0571
## Mismatched frequencies for 'X:70165798' f[G,C] = [0.0322364,0.9677636] vs [0.31,0.69], chisq 1029.195
## Mismatched frequencies for 'X:70872967' f[T,C] = [0.1511081,0.8488919] vs [0.3917,0.6083], chisq 676.2682
## Mismatched frequencies for 'X:70882144' f[C,T] = [0.2740094,0.7259906] vs [0.5062,0.4938], chisq 588.6703
## Mismatched frequencies for 'X:71097678' f[T,C] = [0.05574211,0.9442579] vs [0.3512,0.6488], chisq 1083.101
## Mismatched frequencies for 'X:71113628' f[T,C] = [0.05507052,0.9449295] vs [0.3163,0.6837], chisq 896.1954
## Mismatched frequencies for 'X:71125466' f[C,T] = [0.1222297,0.8777703] vs [0.3783,0.6217], chisq 779.4167
## Mismatched frequencies for 'X:71156602' f[G,A] = [0.1017461,0.8982539] vs [0.3676,0.6324], chisq 852.87
## Mismatched frequencies for 'X:71225152' f[C,T] = [0.03660174,0.9633983] vs [0.3272,0.6728], chisq 1091.186
## Mismatched frequencies for 'X:71239857' f[T,C] = [0.01712559,0.9828744] vs [0.3038,0.6962], chisq 1112.683
## Mismatched frequencies for 'X:71275525' f[G,C] = [0.1044325,0.8955675] vs [0.3751,0.6249], chisq 875.7227
## Mismatched frequencies for 'X:71334368' f[A,G] = [0.1359973,0.8640027] vs [0.4034,0.5966], chisq 827.1028
## Mismatched frequencies for 'X:71344303' f[T,C] = [0.207186,0.792814] vs [0.4506,0.5494], chisq 659.3647
## Mismatched frequencies for 'X:71349753' f[G,A] = [0.2169241,0.7830759] vs [0.4627,0.5373], chisq 668.0773
## Mismatched frequencies for 'X:71349774' f[T,C] = [0.2061786,0.7938213] vs [0.4527,0.5473], chisq 675.608
## Mismatched frequencies for 'X:71379702' f[T,C] = [0.2622566,0.7377434] vs [0.4934,0.5066], chisq 584.5423
## Mismatched frequencies for 'X:71397788' f[C,T] = [0.261585,0.7384151] vs [0.4921,0.5079], chisq 581.5233
## Mismatched frequencies for 'X:71401607' f[G,A] = [0.03660174,0.9633983] vs [0.3239,0.6761], chisq 1072.648
## Mismatched frequencies for 'X:71401614' f[C,A] = [0.03660174,0.9633983] vs [0.3238,0.6762], chisq 1072.089
## Mismatched frequencies for 'X:71507276' f[C,T] = [0.2323707,0.7676293] vs [0.4675,0.5325], chisq 609.8989
## Mismatched frequencies for 'X:71521867' f[G,C] = [0.1145064,0.8854936] vs [0.3693,0.6307], chisq 780.5969
## Mismatched frequencies for 'X:71532360' f[T,C] = [0.1232371,0.8767629] vs [0.3763,0.6237], chisq 762.8904
## Mismatched frequencies for 'X:71538575' f[T,C] = [0.210544,0.789456] vs [0.4659,0.5341], chisq 720.3804
## Mismatched frequencies for 'X:71544289' f[G,T] = [0.1380121,0.8619879] vs [0.3941,0.6059], chisq 765.2665
## Mismatched frequencies for 'X:71559393' f[A,G] = [0.1423774,0.8576226] vs [0.3945,0.6055], chisq 741.1602
## Mismatched frequencies for 'X:72209124' f[T,C] = [0.03458697,0.965413] vs [0.2996,0.7004], chisq 955.8877
## Mismatched frequencies for 'X:72248827' f[G,T] = [0.3321021,0.6678979] vs [0.5219,0.4781], chisq 393.1151
## Mismatched frequencies for 'X:72262913' f[T,C] = [0.3327737,0.6672263] vs [0.5223,0.4777], chisq 391.9991
## Mismatched frequencies for 'X:72286111' f[G,A] = [0.2743452,0.7256548] vs [0.4629,0.5371], chisq 392.3256
## Mismatched frequencies for 'X:72344165' f[C,A] = [0.161182,0.838818] vs [0.384,0.616], chisq 584.1269
## Mismatched frequencies for 'X:72414164' f[T,G] = [0.1027535,0.8972465] vs [0.3544,0.6456], chisq 777.4237
## Mismatched frequencies for 'X:72458400' f[C,T] = [0.3492277,0.6507723] vs [0.5442,0.4558], chisq 416.0714
## Mismatched frequencies for 'X:72480526' f[C,T] = [0.1309604,0.8690396] vs [0.3636,0.6364], chisq 654.1643
## Mismatched frequencies for 'X:72508846' f[T,C] = [0.1302888,0.8697112] vs [0.3657,0.6343], chisq 668.1304
## Mismatched frequencies for 'X:72510820' f[A,G] = [0.07454667,0.9254533] vs [0.3211,0.6789], chisq 789.0381
## Mismatched frequencies for 'X:73190853' f[G,A] = [0.1225655,0.8774345] vs [0.3537,0.6463], chisq 654.8492
## Mismatched frequencies for 'X:73460618' f[T,C] = [0.05171256,0.9482874] vs [0.3111,0.6889], chisq 892.6282
## Mismatched frequencies for 'X:73543879' f[T,C] = [0.1067831,0.8932169] vs [0.3535,0.6465], chisq 747.8101
## Mismatched frequencies for 'X:73583771' f[C,T] = [0.1040967,0.8959033] vs [0.3563,0.6437], chisq 778.7141
## Mismatched frequencies for 'X:73644493' f[C,T] = [0.04936199,0.950638] vs [0.3083,0.6917], chisq 894.6355
## Mismatched frequencies for 'X:73725976' f[C,A] = [0.2585628,0.7414372] vs [0.4951,0.5049], chisq 611.9861
## Mismatched frequencies for 'X:73749319' f[T,G] = [0.1850235,0.8149765] vs [0.4419,0.5581], chisq 738.747
## Mismatched frequencies for 'X:74100169' f[G,A] = [0.003357958,0.996642] vs [0.2819,0.7181], chisq 1104.143
## Mismatched frequencies for 'X:74290784' f[C,T] = [0.9415715,0.05842847] vs [0.9989,0.0011], chisq 1524.373
## Mismatched frequencies for 'X:74578900' f[C,T] = [0.02753526,0.9724647] vs [0.3089,0.6911], chisq 1059.164
## Mismatched frequencies for 'X:74884991' f[G,A] = [0.1712559,0.8287441] vs [0.4284,0.5716], chisq 747.4588
## Mismatched frequencies for 'X:75229863' f[C,T] = [0.3787777,0.6212223] vs [0.5721,0.4279], chisq 412.9464
## Mismatched frequencies for 'X:75260944' f[A,G] = [0.3750839,0.6249161] vs [0.5597,0.4403], chisq 374.8175
## Mismatched frequencies for 'X:75286200' f[G,A] = [0.2222968,0.7777032] vs [0.4569,0.5431], chisq 610.1698
## Mismatched frequencies for 'X:75287667' f[A,G] = [0.02652787,0.9734721] vs [0.3112,0.6888], chisq 1079.634
## Mismatched frequencies for 'X:75475093' f[T,G] = [0.9479517,0.05204835] vs [0.9952,0.0048], chisq 700.5617
## Mismatched frequencies for 'X:75530806' f[C,T] = [0.02149093,0.9785091] vs [0.3097,0.6903], chisq 1110.794
## Mismatched frequencies for 'X:75830162' f[T,C] = [0.2891202,0.7108798] vs [0.4647,0.5353], chisq 339.78
## Mismatched frequencies for 'X:75907631' f[A,G] = [0.08462055,0.9153795] vs [0.3276,0.6724], chisq 756.7202
## Mismatched frequencies for 'X:76188415' f[T,C] = [0.16454,0.8354601] vs [0.4187,0.5813], chisq 735.8548
## Mismatched frequencies for 'X:76240616' f[T,C] = [0.1739422,0.8260577] vs [0.4277,0.5723], chisq 728.1359
## Mismatched frequencies for 'X:76253913' f[T,C] = [0.1453996,0.8546004] vs [0.3761,0.6239], chisq 632.6815
## Mismatched frequencies for 'X:76316148' f[A,G] = [0.3260578,0.6739423] vs [0.51,0.49], chisq 369.2239
## Mismatched frequencies for 'X:76349873' f[A,C] = [0.02014775,0.9798523] vs [0.2891,0.7109], chisq 1009.399
## Mismatched frequencies for 'X:76359165' f[G,A] = [0.1195433,0.8804567] vs [0.3563,0.6437], chisq 684.9376
## Mismatched frequencies for 'X:76400171' f[G,A] = [0.327401,0.6725991] vs [0.5109,0.4891], chisq 367.4332
## Mismatched frequencies for 'X:76473325' f[G,A] = [0.3482203,0.6517797] vs [0.544,0.456], chisq 419.4995
## Mismatched frequencies for 'X:76504010' f[G,A] = [0.3415044,0.6584956] vs [0.5318,0.4682], chisq 395.5192
## Mismatched frequencies for 'X:76591669' f[G,A] = [0.3445265,0.6554735] vs [0.5291,0.4709], chisq 371.9932
## Mismatched frequencies for 'X:76605082' f[A,C] = [0.02249832,0.9775017] vs [0.3061,0.6939], chisq 1082.936
## Mismatched frequencies for 'X:77541469' f[C,T] = [0.1987911,0.8012088] vs [0.4339,0.5661], chisq 621.4549
## Mismatched frequencies for 'X:77594717' f[C,T] = [0.2824043,0.7175957] vs [0.5127,0.4873], chisq 578.7934
## Mismatched frequencies for 'X:77635122' f[T,G] = [0.2249832,0.7750168] vs [0.4523,0.5477], chisq 574.0627
## Mismatched frequencies for 'X:77711036' f[A,G] = [0.2790463,0.7209536] vs [0.5108,0.4892], chisq 586.2179
## Mismatched frequencies for 'X:77770928' f[T,C] = [0.05977166,0.9402283] vs [0.3089,0.6911], chisq 825.6869
## Mismatched frequencies for 'X:77886291' f[G,A] = [0.1040967,0.8959033] vs [0.3518,0.6482], chisq 755.8422
## Mismatched frequencies for 'X:77938635' f[A,G] = [0.01746138,0.9825386] vs [0.2849,0.7151], chisq 1007.962
## Mismatched frequencies for 'X:78210388' f[A,G] = [0.1403627,0.8596373] vs [0.3738,0.6262], chisq 649.8534
## Mismatched frequencies for 'X:78614083' f[T,C] = [0.1433848,0.8566152] vs [0.3623,0.6377], chisq 579.3745
## Mismatched frequencies for 'X:78630857' f[T,C] = [0.06145064,0.9385493] vs [0.3128,0.6872], chisq 834.1249
## Mismatched frequencies for 'X:78649193' f[C,T] = [0.4200806,0.5799194] vs [0.5865,0.4135], chisq 308.6856
## Mismatched frequencies for 'X:78843413' f[A,G] = [0.3562794,0.6437206] vs [0.542,0.458], chisq 377.405
## Mismatched frequencies for 'X:78932289' f[G,A] = [0.4308261,0.5691739] vs [0.6056,0.3944], chisq 344.6916
## Mismatched frequencies for 'X:79079041' f[A,G] = [0.1188717,0.8811282] vs [0.379,0.621], chisq 803.9554
## Mismatched frequencies for 'X:79114521' f[A,G] = [0.3139691,0.6860309] vs [0.5205,0.4795], chisq 465.4387
## Mismatched frequencies for 'X:79143384' f[G,A] = [0.2901276,0.7098724] vs [0.4965,0.5035], chisq 465.5148
## Mismatched frequencies for 'X:79485731' f[A,G] = [0.3203492,0.6796508] vs [0.5121,0.4879], chisq 401.2152
## Mismatched frequencies for 'X:79509262' f[G,A] = [0.3055742,0.6944258] vs [0.5195,0.4805], chisq 499.3506
## Mismatched frequencies for 'X:79698593' f[C,G] = [0.2991941,0.7008059] vs [0.5123,0.4877], chisq 495.588
## Mismatched frequencies for 'X:80072758' f[G,A] = [0.3116185,0.6883815] vs [0.5382,0.4618], chisq 560.9996
## Mismatched frequencies for 'X:80128689' f[C,T] = [0.07421088,0.9257891] vs [0.3396,0.6604], chisq 886.9073
## Mismatched frequencies for 'X:80272022' f[T,C] = [0.213902,0.7860981] vs [0.4532,0.5468], chisq 636.2089
## Mismatched frequencies for 'X:80307705' f[C,T] = [0.2149093,0.7850907] vs [0.4553,0.5447], chisq 641.3404
## Mismatched frequencies for 'X:80603124' f[C,T] = [0.3525856,0.6474144] vs [0.5537,0.4463], chisq 443.7322
## Mismatched frequencies for 'X:80622873' f[T,G] = [0.3220282,0.6779718] vs [0.5334,0.4666], chisq 487.9716
## Mismatched frequencies for 'X:80653531' f[G,A] = [0.3183345,0.6816655] vs [0.5281,0.4719], chisq 480.3241
## Mismatched frequencies for 'X:80666423' f[G,A] = [0.1531229,0.8468771] vs [0.3777,0.6223], chisq 597.9742
## Mismatched frequencies for 'X:80803089' f[G,T] = [0.04801881,0.9519812] vs [0.3053,0.6947], chisq 888.5672
## Mismatched frequencies for 'X:80856643' f[A,G] = [0.3186702,0.6813297] vs [0.528,0.472], chisq 478.3278
## Mismatched frequencies for 'X:80913284' f[C,A] = [0.3190061,0.680994] vs [0.5284,0.4716], chisq 478.6373
## Mismatched frequencies for 'X:80947705' f[C,T] = [0.3203492,0.6796508] vs [0.5312,0.4688], chisq 485.4468
## Mismatched frequencies for 'X:81171086' f[T,C] = [0.350235,0.649765] vs [0.5389,0.4611], chisq 389.2079
## Mismatched frequencies for 'X:81194812' f[T,C] = [0.3485561,0.6514439] vs [0.5378,0.4622], chisq 391.5194
## Mismatched frequencies for 'X:81308952' f[G,C] = [0.1514439,0.8485561] vs [0.3795,0.6205], chisq 615.5117
## Mismatched frequencies for 'X:81827765' f[T,G] = [0.4785091,0.5214909] vs [0.6473,0.3527], chisq 334.5826
## Mismatched frequencies for 'X:81845659' f[T,G] = [0.14137,0.8586299] vs [0.3799,0.6201], chisq 673.7394
## Mismatched frequencies for 'X:82216507' f[C,A] = [0.06950974,0.9304903] vs [0.3217,0.6783], chisq 825.3318
## Mismatched frequencies for 'X:82330656' f[T,C] = [0.3431833,0.6568167] vs [0.5252,0.4748], chisq 361.6331
## Mismatched frequencies for 'X:82954490' f[C,T] = [0.1564809,0.8435191] vs [0.401,0.599], chisq 691.9323
## Mismatched frequencies for 'X:83015739' f[T,C] = [0.3663532,0.6336467] vs [0.5507,0.4493], chisq 372.6538
## Mismatched frequencies for 'X:83068926' f[T,C] = [0.1195433,0.8804567] vs [0.3593,0.6407], chisq 699.6117
## Mismatched frequencies for 'X:83156564' f[G,A] = [0.2444594,0.7555406] vs [0.4603,0.5397], chisq 515.2182
## Mismatched frequencies for 'X:83352970' f[T,C] = [0.1178643,0.8821357] vs [0.373,0.627], chisq 778.906
## Mismatched frequencies for 'X:83509098' f[G,A] = [0.1114842,0.8885158] vs [0.3656,0.6344], chisq 780.3066
## Mismatched frequencies for 'X:83562000' f[A,G] = [0.08159839,0.9184016] vs [0.3439,0.6561], chisq 859.8606
## Mismatched frequencies for 'X:83789203' f[C,T] = [0.6856951,0.3143049] vs [0.9983,0.0017], chisq 9807.413
## Mismatched frequencies for 'X:83797361' f[C,T] = [0.3838146,0.6161854] vs [0.5649,0.4351], chisq 361.37
## Mismatched frequencies for 'X:83809094' f[T,C] = [0.3828072,0.6171927] vs [0.5622,0.4378], chisq 354.2916
## Mismatched frequencies for 'X:83809649' f[A,G] = [0.06715917,0.9328408] vs [0.3375,0.6625], chisq 924.2616
## Mismatched frequencies for 'X:83924645' f[G,A] = [0.1551377,0.8448623] vs [0.3814,0.6186], chisq 604.3765
## Mismatched frequencies for 'X:84140833' f[G,T] = [0.1262592,0.8737408] vs [0.3826,0.6174], chisq 776.978
## Mismatched frequencies for 'X:84144412' f[T,C] = [0.4408999,0.5591001] vs [0.6043,0.3957], chisq 301.2101
## Mismatched frequencies for 'X:84159052' f[C,T] = [0.3143049,0.6856951] vs [0.5111,0.4889], chisq 422.6249
## Mismatched frequencies for 'X:84239175' f[G,A] = [0.3049026,0.6950974] vs [0.5016,0.4984], chisq 422.5319
## Mismatched frequencies for 'X:84272263' f[T,C] = [0.3085964,0.6914036] vs [0.5042,0.4958], chisq 417.7237
## Mismatched frequencies for 'X:84363140' f[A,G] = [0.3132975,0.6867025] vs [0.4985,0.5015], chisq 374.6922
## Mismatched frequencies for 'X:84380619' f[A,G] = [0.3505709,0.6494291] vs [0.5441,0.4559], chisq 409.9365
## Mismatched frequencies for 'X:84408111' f[A,G] = [0.3626595,0.6373405] vs [0.5339,0.4661], chisq 320.4426
## Mismatched frequencies for 'X:84465089' f[G,A] = [0.04499664,0.9550034] vs [0.3033,0.6967], chisq 899.6562
## Mismatched frequencies for 'X:84475720' f[C,A] = [0.2263264,0.7736736] vs [0.4311,0.5689], chisq 471.5167
## Mismatched frequencies for 'X:84563135' f[T,A] = [0.2246474,0.7753526] vs [0.4238,0.5762], chisq 448.2444
## Mismatched frequencies for 'X:84625516' f[A,C] = [0.2061786,0.7938213] vs [0.4182,0.5818], chisq 510.7674
## Mismatched frequencies for 'X:84694918' f[C,A] = [0.2407656,0.7592344] vs [0.4355,0.5645], chisq 424.8836
## Mismatched frequencies for 'X:84991524' f[T,G] = [0.2162525,0.7837475] vs [0.4231,0.5769], chisq 484.0578
## Mismatched frequencies for 'X:85037643' f[A,C] = [0.03257219,0.9674278] vs [0.2947,0.7053], chisq 945.0703
## Mismatched frequencies for 'X:85125119' f[G,A] = [0.2918066,0.7081934] vs [0.4895,0.5105], chisq 427.6988
## Mismatched frequencies for 'X:85393785' f[T,C] = [0.2293486,0.7706515] vs [0.4484,0.5516], chisq 534.0291
## Mismatched frequencies for 'X:85528423' f[C,A] = [0.4049698,0.5950302] vs [0.5755,0.4245], chisq 322.1277
## Mismatched frequencies for 'X:85581014' f[T,C] = [0.4291471,0.5708529] vs [0.5973,0.4027], chisq 317.3006
## Mismatched frequencies for 'X:85633748' f[G,A] = [0.4220954,0.5779046] vs [0.5892,0.4108], chisq 311.73
## Mismatched frequencies for 'X:85639348' f[T,C] = [0.3522498,0.6477501] vs [0.5394,0.4606], chisq 383.0281
## Mismatched frequencies for 'X:85704658' f[T,G] = [0.3015447,0.6984553] vs [0.4912,0.5088], chisq 393.4316
## Mismatched frequencies for 'X:85752102' f[C,T] = [0.2629281,0.7370719] vs [0.4582,0.5418], chisq 421.7741
## Mismatched frequencies for 'X:85850711' f[A,C] = [0.04701142,0.9529886] vs [0.307,0.693], chisq 904.5402
## Mismatched frequencies for 'X:85929478' f[G,T] = [0.2092008,0.7907992] vs [0.4277,0.5723], chisq 538.6317
## Mismatched frequencies for 'X:85938457' f[G,A] = [0.2175957,0.7824043] vs [0.4302,0.5698], chisq 508.8362
## Mismatched frequencies for 'X:86131772' f[T,C] = [0.1541303,0.8458697] vs [0.3949,0.6051], chisq 674.9312
## Mismatched frequencies for 'X:86192003' f[G,T] = [0.2985225,0.7014775] vs [0.4837,0.5163], chisq 375.6801
## Mismatched frequencies for 'X:86208976' f[T,C] = [0.07824043,0.9217595] vs [0.3271,0.6729], chisq 795.2245
## Mismatched frequencies for 'X:86212793' f[T,C] = [0.2897918,0.7102082] vs [0.4667,0.5333], chisq 344.6828
## Mismatched frequencies for 'X:86423568' f[G,T] = [0.03525856,0.9647414] vs [0.3027,0.6973], chisq 967.3023
## Mismatched frequencies for 'X:86560925' f[T,C] = [0.1336467,0.8663533] vs [0.38,0.62], chisq 719.1474
## Mismatched frequencies for 'X:86611721' f[A,G] = [0.1568167,0.8431833] vs [0.3966,0.6034], chisq 668.1471
## Mismatched frequencies for 'X:86652039' f[A,G] = [0.2864338,0.7135661] vs [0.4973,0.5027], chisq 485.9748
## Mismatched frequencies for 'X:86742460' f[C,T] = [0.1967764,0.8032237] vs [0.4205,0.5795], chisq 568.089
## Mismatched frequencies for 'X:86811737' f[C,T] = [0.2192747,0.7807253] vs [0.4323,0.5677], chisq 510.1004
## Mismatched frequencies for 'X:86889557' f[T,C] = [0.2488247,0.7511753] vs [0.4641,0.5359], chisq 511.6302
## Mismatched frequencies for 'X:86960216' f[T,C] = [0.1806582,0.8193418] vs [0.4162,0.5838], chisq 632.5049
## Mismatched frequencies for 'X:87042698' f[T,C] = [0.1356615,0.8643385] vs [0.383,0.617], chisq 722.3619
## Mismatched frequencies for 'X:87065831' f[C,T] = [0.2605776,0.7394224] vs [0.4726,0.5274], chisq 494.5434
## Mismatched frequencies for 'X:87113324' f[G,T] = [0.09939557,0.9006044] vs [0.3437,0.6563], chisq 744.3259
## Mismatched frequencies for 'X:87144045' f[C,T] = [0.2538617,0.7461383] vs [0.4714,0.5286], chisq 520.9319
## Mismatched frequencies for 'X:87220675' f[C,T] = [0.307589,0.692411] vs [0.5261,0.4739], chisq 521.1061
## Mismatched frequencies for 'X:87513306' f[A,G] = [0.0564137,0.9435863] vs [0.3161,0.6839], chisq 885.7619
## Mismatched frequencies for 'X:87537213' f[T,C] = [0.1964406,0.8035594] vs [0.4386,0.5614], chisq 657.4215
## Mismatched frequencies for 'X:87665920' f[C,A] = [0.4113499,0.5886501] vs [0.5771,0.4229], chisq 304.6296
## Mismatched frequencies for 'X:87699794' f[G,A] = [0.3760913,0.6239086] vs [0.5417,0.4583], chisq 300.1821
## Mismatched frequencies for 'X:87710745' f[A,G] = [0.03895232,0.9610477] vs [0.3009,0.6991], chisq 930.6928
## Mismatched frequencies for 'X:87734171' f[C,T] = [0.4879113,0.5120887] vs [0.6522,0.3478], chisq 318.9393
## Mismatched frequencies for 'X:87810629' f[A,G] = [0.2965077,0.7034923] vs [0.4984,0.5016], chisq 445.3623
## Mismatched frequencies for 'X:88008423' f[A,C] = [0.1229013,0.8770987] vs [0.3722,0.6278], chisq 743.9746
## Mismatched frequencies for 'X:88008807' f[G,A] = [0.5698456,0.4301545] vs [0.7262,0.2738], chisq 325.9289
## Mismatched frequencies for 'X:88016385' f[C,T] = [0.3905306,0.6094694] vs [0.584,0.416], chisq 416.0514
## Mismatched frequencies for 'X:88020175' f[C,T] = [0.5691739,0.4308261] vs [0.7262,0.2738], chisq 328.6962
## Mismatched frequencies for 'X:88028744' f[T,C] = [0.1235729,0.8764271] vs [0.3723,0.6277], chisq 740.424
## Mismatched frequencies for 'X:88066919' f[G,A] = [0.5651444,0.4348556] vs [0.7231,0.2769], chisq 330.4293
## Mismatched frequencies for 'X:88089953' f[G,A] = [0.3247146,0.6752854] vs [0.5353,0.4647], chisq 484.4744
## Mismatched frequencies for 'X:88094262' f[T,G] = [0.4778375,0.5221625] vs [0.6517,0.3483], chisq 356.6395
## Mismatched frequencies for 'X:88127730' f[G,A] = [0.1981195,0.8018805] vs [0.4328,0.5672], chisq 619.6617
## Mismatched frequencies for 'X:88154167' f[G,A] = [0.1020819,0.8979181] vs [0.3568,0.6432], chisq 793.9821
## Mismatched frequencies for 'X:88246726' f[C,T] = [0.3660175,0.6339825] vs [0.538,0.462], chisq 323.451
## Mismatched frequencies for 'X:88272497' f[A,G] = [0.4331766,0.5668234] vs [0.5969,0.4031], chisq 300.7981
## Mismatched frequencies for 'X:88303033' f[C,A] = [0.3784419,0.6215581] vs [0.546,0.454], chisq 307.5956
## Mismatched frequencies for 'X:88326079' f[G,A] = [0.0245131,0.9754869] vs [0.2904,0.7096], chisq 982.8764
## Mismatched frequencies for 'X:88447984' f[A,T] = [0.05540631,0.9445937] vs [0.3198,0.6802], chisq 912.2418
## Mismatched frequencies for 'X:88469506' f[C,T] = [0.05507052,0.9449295] vs [0.3188,0.6812], chisq 909.3306
## Mismatched frequencies for 'X:88498119' f[A,G] = [0.3918738,0.6081263] vs [0.6216,0.3784], chisq 600.9915
## Mismatched frequencies for 'X:88526520' f[A,G] = [0.02350571,0.9764943] vs [0.2926,0.7074], chisq 1002.177
## Mismatched frequencies for 'X:88568457' f[T,C] = [0.06548019,0.9345198] vs [0.3181,0.6819], chisq 833.9536
## Mismatched frequencies for 'X:88748498' f[G,T] = [0.1605104,0.8394896] vs [0.4016,0.5984], chisq 672.0555
## Mismatched frequencies for 'X:88781779' f[T,G] = [0.03156481,0.9684352] vs [0.2975,0.7025], chisq 967.2545
## Mismatched frequencies for 'X:88791705' f[T,C] = [0.5869711,0.4130289] vs [0.7812,0.2188], chisq 572.2206
## Mismatched frequencies for 'X:88801579' f[G,A] = [0.2155809,0.7844191] vs [0.4524,0.5476], chisq 623.2978
## Mismatched frequencies for 'X:88852134' f[C,T] = [0.0893217,0.9106783] vs [0.3538,0.6462], chisq 860.9083
## Mismatched frequencies for 'X:88859595' f[A,G] = [0.1165212,0.8834788] vs [0.3659,0.6341], chisq 750.7651
## Mismatched frequencies for 'X:88900692' f[C,A] = [0.2397582,0.7602418] vs [0.4519,0.5481], chisq 499.7391
## Mismatched frequencies for 'X:88941652' f[C,T] = [0.1366689,0.8633311] vs [0.3794,0.6206], chisq 698.4082
## Mismatched frequencies for 'X:88947747' f[C,T] = [0.1343183,0.8656816] vs [0.373,0.627], chisq 680.4612
## Mismatched frequencies for 'X:88970308' f[G,A] = [0.06010745,0.9398925] vs [0.321,0.679], chisq 885.688
## Mismatched frequencies for 'X:89102166' f[G,A] = [0.1944258,0.8055742] vs [0.409,0.591], chisq 527.4566
## Mismatched frequencies for 'X:89125471' f[A,G] = [0.1766286,0.8233714] vs [0.3929,0.6071], chisq 544.5363
## Mismatched frequencies for 'X:89135541' f[G,A] = [0.7934856,0.2065144] vs [0.9255,0.0745], chisq 607.4232
## Mismatched frequencies for 'X:89156036' f[A,G] = [0.1786434,0.8213566] vs [0.3946,0.6054], chisq 541.9587
## Mismatched frequencies for 'X:89177673' f[G,A] = [0.3096038,0.6903963] vs [0.506,0.494], chisq 421.0496
## Mismatched frequencies for 'X:89276219' f[T,C] = [0.02283412,0.9771659] vs [0.2903,0.7097], chisq 995.1323
## Mismatched frequencies for 'X:89276776' f[G,A] = [0.100403,0.8995971] vs [0.3479,0.6521], chisq 759.1348
## Mismatched frequencies for 'X:89303998' f[T,C] = [0.3979181,0.6020819] vs [0.5822,0.4178], chisq 377.2621
## Mismatched frequencies for 'X:89329447' f[T,C] = [0.05003358,0.9499664] vs [0.3117,0.6883], chisq 907.6231
## Mismatched frequencies for 'X:89360687' f[A,G] = [0.3982539,0.6017461] vs [0.5897,0.4103], chisq 408.777
## Mismatched frequencies for 'X:89463365' f[T,C] = [0.06615178,0.9338482] vs [0.3211,0.6789], chisq 844.8187
## Mismatched frequencies for 'X:89655321' f[G,T] = [0.2783748,0.7216253] vs [0.4911,0.5089], chisq 495.1767
## Mismatched frequencies for 'X:89804127' f[A,G] = [0.2437878,0.7562122] vs [0.4445,0.5555], chisq 448.9685
## Mismatched frequencies for 'X:90124163' f[T,C] = [0.3307589,0.6692411] vs [0.7774,0.2226], chisq 2827.45
## Mismatched frequencies for 'X:90137337' f[G,T] = [0.04298187,0.9570181] vs [0.3029,0.6971], chisq 911.9958
## Mismatched frequencies for 'X:90138507' f[A,G] = [0.3364674,0.6635326] vs [0.5386,0.4614], chisq 446.6429
## Mismatched frequencies for 'X:90173807' f[G,A] = [0.7125588,0.2874412] vs [0.8391,0.1609], chisq 307.3696
## Mismatched frequencies for 'X:90190233' f[C,A] = [0.5463398,0.4536602] vs [0.8002,0.1998], chisq 1020.695
## Mismatched frequencies for 'X:90347546' f[A,G] = [0.3713902,0.6286098] vs [0.5422,0.4578], chisq 319.3378
## Mismatched frequencies for 'X:90394269' f[C,G] = [0.3129617,0.6870383] vs [0.5122,0.4878], chisq 433.1682
## Mismatched frequencies for 'X:90397644' f[A,G] = [0.3623237,0.6376763] vs [0.5574,0.4426], chisq 418.0381
## Mismatched frequencies for 'X:90410634' f[G,A] = [0.304231,0.695769] vs [0.5222,0.4778], chisq 518.4308
## Mismatched frequencies for 'X:90422974' f[A,C] = [0.6517797,0.3482203] vs [0.8318,0.1682], chisq 590.459
## Mismatched frequencies for 'X:90658632' f[T,C] = [0.368368,0.631632] vs [0.549,0.451], chisq 357.6487
## Mismatched frequencies for 'X:90917367' f[T,G] = [0.3727334,0.6272667] vs [0.5616,0.4384], chisq 392.4951
## Mismatched frequencies for 'X:91020390' f[T,C] = [0.03257219,0.9674278] vs [0.2958,0.7042], chisq 950.8271
## Mismatched frequencies for 'X:91345831' f[A,G] = [0.2857622,0.7142378] vs [0.4702,0.5298], chisq 374.2429
## Mismatched frequencies for 'X:91428477' f[C,A] = [0.3972465,0.6027535] vs [0.5675,0.4325], chisq 319.898
## Mismatched frequencies for 'X:91452896' f[T,C] = [0.04499664,0.9550034] vs [0.3298,0.6702], chisq 1042.137
## Mismatched frequencies for 'X:91477739' f[C,T] = [0.2051713,0.7948288] vs [0.4243,0.5757], chisq 543.1734
## Mismatched frequencies for 'X:91517038' f[A,C] = [0.2347213,0.7652787] vs [0.461,0.539], chisq 566.3022
## Mismatched frequencies for 'X:91541188' f[T,C] = [0.2189389,0.7810611] vs [0.4368,0.5632], chisq 532.0228
## Mismatched frequencies for 'X:91570046' f[A,G] = [0.03122901,0.968771] vs [0.2934,0.7066], chisq 948.2234
## Mismatched frequencies for 'X:91640119' f[A,G] = [0.4781733,0.5218267] vs [0.6632,0.3368], chisq 409.235
## Mismatched frequencies for 'X:91640969' f[C,T] = [0.4781733,0.5218267] vs [0.6474,0.3526], chisq 336.3369
## Mismatched frequencies for 'X:91643118' f[G,A] = [0.4862324,0.5137676] vs [0.6491,0.3509], chisq 312.3416
## Mismatched frequencies for 'X:91658048' f[A,C] = [0.1145064,0.8854936] vs [0.3668,0.6332], chisq 767.7291
## Mismatched frequencies for 'X:91687416' f[A,C] = [0.1934184,0.8065816] vs [0.4351,0.5649], chisq 656.3879
## Mismatched frequencies for 'X:91704963' f[T,C] = [0.2182673,0.7817327] vs [0.4488,0.5512], chisq 591.6684
## Mismatched frequencies for 'X:91707918' f[A,C] = [0.6501008,0.3498993] vs [0.7944,0.2056], chisq 333.4872
## Mismatched frequencies for 'X:91782965' f[G,T] = [0.03156481,0.9684352] vs [0.299,0.701], chisq 975.1851
## Mismatched frequencies for 'X:91795415' f[G,A] = [0.3760913,0.6239086] vs [0.5434,0.4566], chisq 306.4859
## Mismatched frequencies for 'X:91946844' f[G,T] = [0.6057757,0.3942243] vs [0.8261,0.1739], chisq 852.1624
## Mismatched frequencies for 'X:92102468' f[G,A] = [0.3458697,0.6541303] vs [0.6362,0.3638], chisq 968.1413
## Mismatched frequencies for 'X:92103217' f[C,T] = [0.3455339,0.6544661] vs [0.5444,0.4556], chisq 432.8436
## Mismatched frequencies for 'X:92128217' f[T,C] = [0.351914,0.648086] vs [0.5444,0.4556], chisq 405.5645
## Mismatched frequencies for 'X:92128826' f[G,C] = [0.3529214,0.6470786] vs [0.5442,0.4558], chisq 400.4836
## Mismatched frequencies for 'X:92133307' f[G,A] = [0.3844862,0.6155137] vs [0.5546,0.4454], chisq 317.8234
## Mismatched frequencies for 'X:92239004' f[G,C] = [0.0648086,0.9351914] vs [0.326,0.674], chisq 879.4357
## Mismatched frequencies for 'X:92357401' f[G,A] = [0.0963734,0.9036266] vs [0.3765,0.6235], chisq 937.2679
## Mismatched frequencies for 'X:92392650' f[C,T] = [0.08629953,0.9137005] vs [0.368,0.632], chisq 958.7991
## Mismatched frequencies for 'X:92417576' f[T,C] = [0.0567495,0.9432505] vs [0.3444,0.6556], chisq 1036.856
## Mismatched frequencies for 'X:92421113' f[C,T] = [0.06212223,0.9378778] vs [0.3494,0.6506], chisq 1025.766
## Mismatched frequencies for 'X:92468672' f[T,C] = [0.4456011,0.5543989] vs [0.6358,0.3642], chisq 418.7715
## Mismatched frequencies for 'X:92568120' f[A,G] = [0.1051041,0.8948959] vs [0.3605,0.6395], chisq 793.9888
## Mismatched frequencies for 'X:92576361' f[C,T] = [0.1997985,0.8002015] vs [0.4397,0.5603], chisq 644.6645
## Mismatched frequencies for 'X:92927634' f[G,C] = [0.3539288,0.6460712] vs [0.5464,0.4536], chisq 405.6927
## Mismatched frequencies for 'X:92947672' f[C,T] = [0.3582942,0.6417059] vs [0.5436,0.4564], chisq 375.8553
## Mismatched frequencies for 'X:92952292' f[A,C] = [0.2078576,0.7921424] vs [0.4414,0.5586], chisq 610.0529
## Mismatched frequencies for 'X:92956349' f[C,A] = [0.4738079,0.5261921] vs [0.635,0.365], chisq 301.2845
## Mismatched frequencies for 'X:93225725' f[G,T] = [0.2014775,0.7985225] vs [0.4305,0.5695], chisq 590.9238
## Mismatched frequencies for 'X:93285005' f[C,A] = [0.1846877,0.8153123] vs [0.4243,0.5757], chisq 650.3498
## Mismatched frequencies for 'X:93310514' f[A,G] = [0.03391538,0.9660846] vs [0.3166,0.6834], chisq 1052.596
## Mismatched frequencies for 'X:93319894' f[G,A] = [0.2662861,0.7337139] vs [0.4897,0.5103], chisq 546.4697
## Mismatched frequencies for 'X:93346524' f[T,C] = [0.226998,0.773002] vs [0.4606,0.5394], chisq 603.8419
## Mismatched frequencies for 'X:93350616' f[C,T] = [0.3018805,0.6981195] vs [0.4936,0.5064], chisq 401.8731
## Mismatched frequencies for 'X:93471491' f[G,C] = [0.1027535,0.8972465] vs [0.3514,0.6486], chisq 762.1676
## Mismatched frequencies for 'X:93508164' f[T,C] = [0.1840161,0.8159839] vs [0.4264,0.5736], chisq 664.5041
## Mismatched frequencies for 'X:93524150' f[A,G] = [0.01141706,0.988583] vs [0.2942,0.7058], chisq 1105.57
## Mismatched frequencies for 'X:93528070' f[C,A] = [0.01276024,0.9872398] vs [0.2958,0.7042], chisq 1103.54
## Mismatched frequencies for 'X:93529491' f[C,T] = [0.01242445,0.9875755] vs [0.3017,0.6983], chisq 1138.771
## Mismatched frequencies for 'X:93531409' f[G,A] = [0.01208865,0.9879113] vs [0.3017,0.6983], chisq 1141.488
## Mismatched frequencies for 'X:93532839' f[G,T] = [0.01242445,0.9875755] vs [0.3014,0.6986], chisq 1137.105
## Mismatched frequencies for 'X:93602161' f[G,T] = [0.3784419,0.6215581] vs [0.5614,0.4386], chisq 368.3619
## Mismatched frequencies for 'X:93614026' f[T,C] = [0.3777703,0.6222297] vs [0.5566,0.4434], chisq 351.3725
## Mismatched frequencies for 'X:93647329' f[C,A] = [0.3794493,0.6205507] vs [0.8329,0.1671], chisq 3439.131
## Mismatched frequencies for 'X:93722367' f[A,G] = [0.09838818,0.9016118] vs [0.3625,0.6375], chisq 847.5692
## Mismatched frequencies for 'X:94056870' f[T,C] = [0.1312962,0.8687038] vs [0.386,0.614], chisq 763.8729
## Mismatched frequencies for 'X:94069533' f[A,C] = [0.2316991,0.7683009] vs [0.4503,0.5497], chisq 531.2543
## Mismatched frequencies for 'X:94072741' f[T,C] = [0.2750168,0.7249832] vs [0.4936,0.5064], chisq 522.6073
## Mismatched frequencies for 'X:94114429' f[T,C] = [0.02820685,0.9717932] vs [0.304,0.696], chisq 1027.322
## Mismatched frequencies for 'X:94239821' f[G,C] = [0.4771659,0.5228341] vs [0.6391,0.3609], chisq 305.359
## Mismatched frequencies for 'X:94275569' f[A,G] = [0.004701142,0.9952989] vs [0.2907,0.7093], chisq 1140.951
## Mismatched frequencies for 'X:94349078' f[C,T] = [0.4509738,0.5490262] vs [0.6142,0.3858], chisq 302.9427
## Mismatched frequencies for 'X:94397018' f[G,A] = [0.4163868,0.5836132] vs [0.5955,0.4045], chisq 359.354
## Mismatched frequencies for 'X:94535408' f[C,T] = [0.3129617,0.6870383] vs [0.5251,0.4749], chisq 491.14
## Mismatched frequencies for 'X:94770092' f[C,A] = [0.2736736,0.7263264] vs [0.4852,0.5148], chisq 490.2878
## Mismatched frequencies for 'X:94827219' f[C,T] = [0.04936199,0.950638] vs [0.3066,0.6934], chisq 885.8177
## Mismatched frequencies for 'X:94861142' f[G,T] = [0.05540631,0.9445937] vs [0.3288,0.6712], chisq 960.3835
## Mismatched frequencies for 'X:95048068' f[C,T] = [0.4439221,0.5560779] vs [0.6099,0.3901], chisq 312.0851
## Mismatched frequencies for 'X:95055676' f[C,A] = [0.04163868,0.9583613] vs [0.3162,0.6838], chisq 992.409
## Mismatched frequencies for 'X:95086705' f[G,T] = [0.2471457,0.7528543] vs [0.4783,0.5217], chisq 586.9839
## Mismatched frequencies for 'X:95100266' f[T,C] = [0.3347884,0.6652116] vs [0.5439,0.4561], chisq 478.4511
## Mismatched frequencies for 'X:95110543' f[C,A] = [0.1185359,0.8814641] vs [0.3698,0.6302], chisq 758.3121
## Mismatched frequencies for 'X:95140595' f[C,T] = [0.2508395,0.7491605] vs [0.4818,0.5182], chisq 585.3479
## Mismatched frequencies for 'X:95161121' f[A,G] = [0.1047683,0.8952317] vs [0.3754,0.6246], chisq 875.1483
## Mismatched frequencies for 'X:95173812' f[G,A] = [0.2629281,0.7370719] vs [0.501,0.499], chisq 619.3255
## Mismatched frequencies for 'X:95231526' f[C,T] = [0.1581598,0.8418402] vs [0.3987,0.6013], chisq 670.945
## Mismatched frequencies for 'X:95291414' f[T,C] = [0.258227,0.741773] vs [0.483,0.517], chisq 554.1228
## Mismatched frequencies for 'X:95292076' f[A,G] = [0.1655473,0.8344526] vs [0.395,0.605], chisq 612.2883
## Mismatched frequencies for 'X:95294529' f[G,A] = [0.1752854,0.8247146] vs [0.423,0.577], chisq 696.184
## Mismatched frequencies for 'X:95328176' f[G,A] = [0.03022163,0.9697784] vs [0.2921,0.7079], chisq 948.9146
## Mismatched frequencies for 'X:95521025' f[T,C] = [0.06581598,0.934184] vs [0.3278,0.6722], chisq 881.9625
## Mismatched frequencies for 'X:95543588' f[C,T] = [0.304231,0.695769] vs [0.5063,0.4937], chisq 445.7307
## Mismatched frequencies for 'X:95736453' f[T,C] = [0.2112156,0.7887844] vs [0.4545,0.5455], chisq 657.2391
## Mismatched frequencies for 'X:95766259' f[T,C] = [0.2152451,0.7847549] vs [0.4432,0.5568], chisq 580.3784
## Mismatched frequencies for 'X:95803439' f[T,C] = [0.0322364,0.9677636] vs [0.3136,0.6864], chisq 1048.885
## Mismatched frequencies for 'X:95804106' f[A,G] = [0.06984554,0.9301544] vs [0.3332,0.6668], chisq 882.7935
## Mismatched frequencies for 'X:95820513' f[A,G] = [0.1783076,0.8216924] vs [0.4129,0.5871], chisq 629.1978
## Mismatched frequencies for 'X:95833558' f[T,G] = [0.02887844,0.9711216] vs [0.3013,0.6987], chisq 1007.672
## Mismatched frequencies for 'X:96072046' f[G,A] = [0.02719946,0.9728005] vs [0.2954,0.7046], chisq 988.9364
## Mismatched frequencies for 'X:96283685' f[G,T] = [0.04734721,0.9526528] vs [0.3081,0.6919], chisq 907.8882
## Mismatched frequencies for 'X:96347438' f[G,A] = [0.02350571,0.9764943] vs [0.2922,0.7078], chisq 1000.056
## Mismatched frequencies for 'X:96397369' f[G,A] = [0.4314977,0.5685024] vs [0.6061,0.3939], chisq 344.1486
## Mismatched frequencies for 'X:96410191' f[A,G] = [0.3804567,0.6195433] vs [0.5539,0.4461], chisq 330.2826
## Mismatched frequencies for 'X:96436380' f[G,A] = [0.3730692,0.6269308] vs [0.5664,0.4336], chisq 411.9742
## Mismatched frequencies for 'X:96520542' f[G,A] = [0.4019476,0.5980524] vs [0.5952,0.4048], chisq 417.9212
## Mismatched frequencies for 'X:96847022' f[T,C] = [0.4405641,0.5594358] vs [0.6162,0.3838], chisq 351.0406
## Mismatched frequencies for 'X:96873053' f[T,C] = [0.05910007,0.9408999] vs [0.3294,0.6706], chisq 937.2997
## Mismatched frequencies for 'X:97081211' f[C,A] = [0.3102754,0.6897246] vs [0.4784,0.5216], chisq 309.9993
## Mismatched frequencies for 'X:97098163' f[G,C] = [0.2411014,0.7588986] vs [0.4712,0.5288], chisq 583.1042
## Mismatched frequencies for 'X:97100358' f[G,A] = [0.1893889,0.8106111] vs [0.4247,0.5753], chisq 626.833
## Mismatched frequencies for 'X:97102624' f[G,A] = [0.2847549,0.7152451] vs [0.4989,0.5011], chisq 501.1009
## Mismatched frequencies for 'X:97107574' f[A,G] = [0.1215581,0.8784419] vs [0.3661,0.6339], chisq 721.325
## Mismatched frequencies for 'X:97396467' f[A,G] = [0.3257219,0.674278] vs [0.5043,0.4957], chisq 348.1211
## Mismatched frequencies for 'X:97401268' f[T,C] = [0.3260578,0.6739423] vs [0.5044,0.4956], chisq 347.1989
## Mismatched frequencies for 'X:97476194' f[G,A] = [0.2491605,0.7508395] vs [0.4532,0.5468], chisq 461.8116
## Mismatched frequencies for 'X:97542407' f[G,A] = [0.2696441,0.7303559] vs [0.4669,0.5331], chisq 428.7881
## Mismatched frequencies for 'X:97644313' f[C,T] = [0.3562794,0.6437206] vs [0.5281,0.4719], chisq 322.3669
## Mismatched frequencies for 'X:97701619' f[C,G] = [0.2018133,0.7981867] vs [0.4223,0.5777], chisq 550.8454
## Mismatched frequencies for 'X:97708809' f[C,T] = [0.2609134,0.7390866] vs [0.4815,0.5185], chisq 533.8541
## Mismatched frequencies for 'X:97864354' f[T,C] = [0.241773,0.758227] vs [0.45,0.55], chisq 481.8764
## Mismatched frequencies for 'X:98264288' f[T,C] = [0.7155809,0.2844191] vs [0.9976,0.0024], chisq 8537.649
## Mismatched frequencies for 'X:98359829' f[A,G] = [0.2820685,0.7179315] vs [0.4606,0.5394], chisq 351.9462
## Mismatched frequencies for 'X:98407829' f[C,T] = [0.3448623,0.6551377] vs [0.5198,0.4802], chisq 333.9544
## Mismatched frequencies for 'X:98536813' f[A,G] = [0,1] vs [0.29,0.71], chisq 1176.013
## Mismatched frequencies for 'X:98537264' f[C,A] = [0.001007387,0.9989926] vs [0.2931,0.7069], chisq 1184.773
## Mismatched frequencies for 'X:98549339' f[G,A] = [0,1] vs [0.2904,0.7096], chisq 1178.222
## Mismatched frequencies for 'X:98813260' f[A,G] = [0.06850235,0.9314976] vs [0.3407,0.6593], chisq 932.1687
## Mismatched frequencies for 'X:98835982' f[C,T] = [0.05171256,0.9482874] vs [0.3352,0.6648], chisq 1022.373
## Mismatched frequencies for 'X:99054391' f[G,A] = [0.1111484,0.8888516] vs [0.3806,0.6194], chisq 861.7441
## Mismatched frequencies for 'X:99074987' f[G,A] = [0.1296172,0.8703828] vs [0.3848,0.6152], chisq 767.8671
## Mismatched frequencies for 'X:99092511' f[T,G] = [0.08462055,0.9153795] vs [0.3625,0.6375], chisq 939.7886
## Mismatched frequencies for 'X:99227329' f[A,C] = [0.1030893,0.8969107] vs [0.3698,0.6302], chisq 855.8997
## Mismatched frequencies for 'X:99298279' f[T,C] = [0.2719946,0.7280053] vs [0.4936,0.5064], chisq 537.1857
## Mismatched frequencies for 'X:99389483' f[G,C] = [0.0003357958,0.9996642] vs [0.282,0.718], chisq 1129.497
## Mismatched frequencies for 'X:99483759' f[A,G] = [0.3002015,0.6997985] vs [0.4684,0.5316], chisq 311.2919
## Mismatched frequencies for 'X:99552280' f[G,A] = [0.05540631,0.9445937] vs [0.335,0.665], chisq 994.2586
## Mismatched frequencies for 'X:99672001' f[G,T] = [0.4798523,0.5201477] vs [0.6527,0.3473], chisq 352.9445
## Mismatched frequencies for 'X:99700786' f[C,T] = [0.4231028,0.5768973] vs [0.6015,0.3985], chisq 357.9745
## Mismatched frequencies for 'X:99722163' f[C,T] = [0.3888516,0.6111484] vs [0.5663,0.4337], chisq 347.242
## Mismatched frequencies for 'X:99743538' f[C,T] = [0.4738079,0.5261921] vs [0.6526,0.3474], chisq 377.3677
## Mismatched frequencies for 'X:99828252' f[C,T] = [0.3116185,0.6883815] vs [0.4945,0.5055], chisq 365.5707
## Mismatched frequencies for 'X:99847554' f[A,G] = [0.1497649,0.850235] vs [0.3913,0.6087], chisq 681.9413
## Mismatched frequencies for 'X:99906875' f[T,G] = [0.3945601,0.6054399] vs [0.5628,0.4372], chisq 311.7935
## Mismatched frequencies for 'X:99920975' f[G,A] = [0.02014775,0.9798523] vs [0.297,0.703], chisq 1051.67
## Mismatched frequencies for 'X:99993277' f[T,C] = [0.47045,0.52955] vs [0.6409,0.3591], chisq 338.7158
## Mismatched frequencies for 'X:100003215' f[T,C] = [0.4402283,0.5597717] vs [0.6101,0.3899], chisq 326.8665
## Mismatched frequencies for 'X:100084686' f[A,G] = [0.4288113,0.5711887] vs [0.5996,0.4004], chisq 327.798
## Mismatched frequencies for 'X:100105008' f[T,C] = [0.007051712,0.9929483] vs [0.2845,0.7155], chisq 1088.149
## Mismatched frequencies for 'X:100109374' f[A,G] = [0.3992612,0.6007388] vs [0.5671,0.4329], chisq 310.8615
## Mismatched frequencies for 'X:100131584' f[C,G] = [0.402955,0.597045] vs [0.5708,0.4292], chisq 311.396
## Mismatched frequencies for 'X:100146046' f[T,C] = [0.01040967,0.9895903] vs [0.2892,0.7108], chisq 1086.484
## Mismatched frequencies for 'X:100240089' f[A,G] = [0.129953,0.870047] vs [0.3864,0.6136], chisq 774.1353
## Mismatched frequencies for 'X:100243459' f[G,T] = [0.0802552,0.9197448] vs [0.3436,0.6564], chisq 867.2627
## Mismatched frequencies for 'X:100455040' f[T,C] = [0.3999328,0.6000671] vs [0.5687,0.4313], chisq 314.5183
## Mismatched frequencies for 'X:100547933' f[A,G] = [0.01343183,0.9865681] vs [0.2882,0.7118], chisq 1057.043
## Mismatched frequencies for 'X:100652086' f[T,C] = [0.2535258,0.7464741] vs [0.4514,0.5486], chisq 434.6173
## Mismatched frequencies for 'X:100686282' f[G,C] = [0.353593,0.646407] vs [0.5348,0.4652], chisq 358.8322
## Mismatched frequencies for 'X:100701655' f[T,C] = [0.2394224,0.7605776] vs [0.4422,0.5578], chisq 458.9385
## Mismatched frequencies for 'X:100742272' f[T,C] = [0.2864338,0.7135661] vs [0.4832,0.5168], chisq 424.3364
## Mismatched frequencies for 'X:100743826' f[A,G] = [0.2951645,0.7048355] vs [0.4873,0.5127], chisq 404.1454
## Mismatched frequencies for 'X:100749585' f[C,T] = [0.3347884,0.6652116] vs [0.523,0.477], chisq 386.5962
## Mismatched frequencies for 'X:100911066' f[C,T] = [0.097045,0.902955] vs [0.3362,0.6638], chisq 721.6902
## Mismatched frequencies for 'X:101324294' f[T,G] = [0.371726,0.628274] vs [0.5502,0.4498], chisq 349.288
## Mismatched frequencies for 'X:101806677' f[T,G] = [0.3129617,0.6870383] vs [0.5021,0.4979], chisq 390.629
## Mismatched frequencies for 'X:101815364' f[T,C] = [0.4006044,0.5993956] vs [0.5708,0.4292], chisq 320.1499
## Mismatched frequencies for 'X:102241591' f[G,A] = [0.02854264,0.9714574] vs [0.2958,0.7042], chisq 980.9176
## Mismatched frequencies for 'X:102458192' f[G,A] = [0.1175285,0.8824714] vs [0.3642,0.6358], chisq 736.0468
## Mismatched frequencies for 'X:102494592' f[A,G] = [0.3868368,0.6131632] vs [0.5631,0.4369], chisq 342.1912
## Mismatched frequencies for 'X:102666281' f[G,A] = [0.06044325,0.9395568] vs [0.3231,0.6769], chisq 894.377
## Mismatched frequencies for 'X:102720961' f[G,T] = [0.2662861,0.7337139] vs [0.471,0.529], chisq 461.2044
## Mismatched frequencies for 'X:102742742' f[G,A] = [0.05439892,0.9456011] vs [0.3113,0.6887], chisq 874.865
## Mismatched frequencies for 'X:102946721' f[C,T] = [0.3472129,0.6527871] vs [0.5211,0.4789], chisq 329.9768
## Mismatched frequencies for 'X:102979486' f[T,C] = [0.05036937,0.9496306] vs [0.3098,0.6902], chisq 895.325
## Mismatched frequencies for 'X:103036412' f[A,G] = [0.3290799,0.6709201] vs [0.5142,0.4858], chisq 373.9258
## Mismatched frequencies for 'X:103120236' f[G,A] = [0.3196776,0.6803223] vs [0.515,0.485], chisq 416.2771
## Mismatched frequencies for 'X:103267865' f[C,T] = [0.340497,0.659503] vs [0.5228,0.4772], chisq 362.7106
## Mismatched frequencies for 'X:104465974' f[C,T] = [0.3767629,0.6232371] vs [0.5488,0.4512], chisq 324.4692
## Mismatched frequencies for 'X:104566045' f[C,T] = [0.06245803,0.937542] vs [0.3355,0.6645], chisq 946.4652
## Mismatched frequencies for 'X:104637978' f[C,T] = [0.0241773,0.9758227] vs [0.3146,0.6854], chisq 1116.97
## Mismatched frequencies for 'X:104816403' f[G,A] = [0.3811283,0.6188718] vs [0.5627,0.4373], chisq 362.9945
## Mismatched frequencies for 'X:105179132' f[C,T] = [0.3895232,0.6104768] vs [0.5633,0.4367], chisq 332.6587
## Mismatched frequencies for 'X:105300358' f[G,A] = [0.1121558,0.8878442] vs [0.3732,0.6268], chisq 815.7151
## Mismatched frequencies for 'X:105319355' f[G,A] = [0.1064473,0.8935527] vs [0.375,0.625], chisq 862.0051
## Mismatched frequencies for 'X:105360289' f[A,G] = [0.3196776,0.6803223] vs [0.4947,0.5053], chisq 334.7789
## Mismatched frequencies for 'X:105670409' f[A,G] = [0.01208865,0.9879113] vs [0.2859,0.7141], chisq 1055.369
## Mismatched frequencies for 'X:106468708' f[T,G] = [0.2810611,0.7189389] vs [0.4667,0.5333], chisq 379.6526
## Mismatched frequencies for 'X:106554804' f[C,T] = [0.04902619,0.9509738] vs [0.308,0.692], chisq 895.4499
## Mismatched frequencies for 'X:106709803' f[A,G] = [0.04499664,0.9550034] vs [0.3057,0.6943], chisq 912.1441
## Mismatched frequencies for 'X:106753580' f[T,C] = [0.2159167,0.7840833] vs [0.4251,0.5749], chisq 494.3614
## Mismatched frequencies for 'X:106927959' f[A,G] = [0.3451981,0.6548019] vs [0.5371,0.4629], chisq 402.5305
## Mismatched frequencies for 'X:106954772' f[C,T] = [0.1323036,0.8676965] vs [0.4026,0.5974], chisq 845.9959
## Mismatched frequencies for 'X:107050397' f[C,G] = [0.351914,0.648086] vs [0.5322,0.4678], chisq 355.0623
## Mismatched frequencies for 'X:107092263' f[A,G] = [0.04633983,0.9536602] vs [0.3043,0.6957], chisq 895.2831
## Mismatched frequencies for 'X:107328436' f[G,A] = [0.3190061,0.680994] vs [0.5123,0.4877], chisq 407.6982
## Mismatched frequencies for 'X:107393147' f[G,T] = [0.1816656,0.8183345] vs [0.4109,0.5891], chisq 601.6259
## Mismatched frequencies for 'X:107433688' f[A,G] = [0.2081934,0.7918066] vs [0.4473,0.5527], chisq 637.3249
## Mismatched frequencies for 'X:107476909' f[C,A] = [0.2155809,0.7844191] vs [0.445,0.555], chisq 587.2524
## Mismatched frequencies for 'X:107481989' f[C,T] = [0.2182673,0.7817327] vs [0.452,0.548], chisq 607.2043
## Mismatched frequencies for 'X:107738231' f[G,A] = [0.2145735,0.7854264] vs [0.4411,0.5589], chisq 573.8436
## Mismatched frequencies for 'X:107770928' f[C,T] = [0.3149765,0.6850235] vs [0.5142,0.4858], chisq 433.0794
## Mismatched frequencies for 'X:108072003' f[G,A] = [0.207186,0.792814] vs [0.4494,0.5506], chisq 653.2919
## Mismatched frequencies for 'X:108115365' f[C,T] = [0.1531229,0.8468771] vs [0.4035,0.5965], chisq 724.0206
## Mismatched frequencies for 'X:108207148' f[T,C] = [0.1202149,0.8797851] vs [0.3698,0.6302], chisq 748.0712
## Mismatched frequencies for 'X:108303770' f[T,C] = [0.2028207,0.7971793] vs [0.4414,0.5586], chisq 636.8247
## Mismatched frequencies for 'X:108434258' f[C,A] = [0.04902619,0.9509738] vs [0.3172,0.6828], chisq 943.8852
## Mismatched frequencies for 'X:108507511' f[A,G] = [0.02149093,0.9785091] vs [0.2913,0.7087], chisq 1010.726
## Mismatched frequencies for 'X:108627203' f[T,C] = [0.2209537,0.7790464] vs [0.4389,0.5611], chisq 531.7033
## Mismatched frequencies for 'X:108684908' f[C,T] = [0.243452,0.7565481] vs [0.4507,0.5493], chisq 477.1519
## Mismatched frequencies for 'X:108708516' f[C,T] = [0.1655473,0.8344526] vs [0.3942,0.6058], chisq 608.5003
## Mismatched frequencies for 'X:108904729' f[C,T] = [0.006044325,0.9939557] vs [0.2869,0.7131], chisq 1109.263
## Mismatched frequencies for 'X:108964592' f[G,C] = [0.3226998,0.6773002] vs [0.5045,0.4955], chisq 360.7993
## Mismatched frequencies for 'X:109106747' f[A,C] = [0.2991941,0.7008059] vs [0.4987,0.5013], chisq 434.8644
## Mismatched frequencies for 'X:109173476' f[T,C] = [0.09402283,0.9059772] vs [0.3405,0.6595], chisq 761.8304
## Mismatched frequencies for 'X:109285322' f[T,C] = [0.2471457,0.7528543] vs [0.4735,0.5265], chisq 563.7241
## Mismatched frequencies for 'X:109291468' f[T,C] = [0.3710544,0.6289456] vs [0.5705,0.4295], chisq 439.1078
## Mismatched frequencies for 'X:109375110' f[A,G] = [0.1692411,0.8307589] vs [0.4203,0.5797], chisq 716.8742
## Mismatched frequencies for 'X:109485665' f[G,A] = [0.2871054,0.7128946] vs [0.4708,0.5292], chisq 371.1437
## Mismatched frequencies for 'X:109537062' f[C,T] = [0.4231028,0.5768973] vs [0.5883,0.4117], chisq 304.5163
## Mismatched frequencies for 'X:110332269' f[C,T] = [0.01914036,0.9808596] vs [0.3061,0.6939], chisq 1109.406
## Mismatched frequencies for 'X:110489520' f[A,G] = [0.04566823,0.9543318] vs [0.3129,0.6871], chisq 945.2295
## Mismatched frequencies for 'X:111150510' f[T,C] = [0.1648758,0.8351243] vs [0.3978,0.6022], chisq 629.3006
## Mismatched frequencies for 'X:111152951' f[A,G] = [0.1840161,0.8159839] vs [0.4216,0.5784], chisq 640.6922
## Mismatched frequencies for 'X:111156671' f[G,A] = [0.07353929,0.9264607] vs [0.3333,0.6667], chisq 858.2571
## Mismatched frequencies for 'X:111281680' f[G,A] = [0.1054399,0.8945601] vs [0.3561,0.6439], chisq 769.294
## Mismatched frequencies for 'X:111400754' f[T,C] = [0.2132304,0.7867696] vs [0.4293,0.5707], chisq 526.0154
## Mismatched frequencies for 'X:111404128' f[G,A] = [0.2568838,0.7431162] vs [0.4609,0.5391], chisq 459.9748
## Mismatched frequencies for 'X:111511839' f[G,A] = [0.213902,0.7860981] vs [0.4325,0.5675], chisq 537.2398
## Mismatched frequencies for 'X:111514180' f[G,A] = [0.2239758,0.7760242] vs [0.4385,0.5615], chisq 515.1747
## Mismatched frequencies for 'X:111524772' f[T,C] = [0.09872398,0.901276] vs [0.3432,0.6568], chisq 745.9934
## Mismatched frequencies for 'X:111533248' f[A,G] = [0.04096709,0.9590329] vs [0.3084,0.6916], chisq 955.5244
## Mismatched frequencies for 'X:111646464' f[C,T] = [0.2468099,0.75319] vs [0.4714,0.5286], chisq 555.3776
## Mismatched frequencies for 'X:111648632' f[A,G] = [0.06010745,0.9398925] vs [0.3364,0.6636], chisq 968.0774
## Mismatched frequencies for 'X:111664389' f[A,G] = [0.03357958,0.9664204] vs [0.3127,0.6873], chisq 1033.73
## Mismatched frequencies for 'X:112079982' f[T,C] = [0.4197448,0.5802552] vs [0.584,0.416], chisq 300.3033
## Mismatched frequencies for 'X:112080302' f[G,A] = [0.1521155,0.8478845] vs [0.392,0.608], chisq 672.0318
## Mismatched frequencies for 'X:112184753' f[C,G] = [0.1171927,0.8828073] vs [0.3611,0.6389], chisq 722.5459
## Mismatched frequencies for 'X:112358776' f[A,C] = [0.3498993,0.6501008] vs [0.5348,0.4652], chisq 373.5922
## Mismatched frequencies for 'X:112397966' f[C,T] = [0.03425118,0.9657488] vs [0.2951,0.7049], chisq 934.7839
## Mismatched frequencies for 'X:112413133' f[C,T] = [0.3478845,0.6521155] vs [0.5334,0.4666], chisq 375.9996
## Mismatched frequencies for 'X:112485470' f[C,T] = [0.3710544,0.6289456] vs [0.5399,0.4601], chisq 311.8926
## Mismatched frequencies for 'X:112528386' f[A,G] = [0.4079919,0.5920081] vs [0.5791,0.4209], chisq 324.9044
## Mismatched frequencies for 'X:112626107' f[T,A] = [0.0003357958,0.9996642] vs [0.2934,0.7066], chisq 1192.055
## Mismatched frequencies for 'X:112661931' f[T,C] = [0.4042982,0.5957018] vs [0.5949,0.4051], chisq 406.5154
## Mismatched frequencies for 'X:112715610' f[T,C] = [0.416051,0.583949] vs [0.6081,0.3919], chisq 416.5297
## Mismatched frequencies for 'X:112798604' f[C,T] = [0.07790463,0.9220954] vs [0.3357,0.6643], chisq 841.5497
## Mismatched frequencies for 'X:112808948' f[A,G] = [0.4278039,0.5721961] vs [0.6178,0.3822], chisq 410.9276
## Mismatched frequencies for 'X:112889289' f[T,C] = [0.4365346,0.5634654] vs [0.6059,0.3941], chisq 323.8727
## Mismatched frequencies for 'X:112893370' f[A,G] = [0.3801209,0.6198791] vs [0.5697,0.4303], chisq 396.7425
## Mismatched frequencies for 'X:112988494' f[C,T] = [0.07454667,0.9254533] vs [0.335,0.665], chisq 860.3673
## Mismatched frequencies for 'X:113019754' f[T,C] = [0.04566823,0.9543318] vs [0.3131,0.6869], chisq 946.2923
## Mismatched frequencies for 'X:113310348' f[G,A] = [0.146407,0.853593] vs [0.3803,0.6197], chisq 647.1796
## Mismatched frequencies for 'X:113311824' f[G,T] = [0.09335124,0.9066488] vs [0.3413,0.6587], chisq 770.0933
## Mismatched frequencies for 'X:113315715' f[G,A] = [0.2471457,0.7528543] vs [0.4593,0.5407], chisq 497.9315
## Mismatched frequencies for 'X:113577197' f[T,G] = [0.3626595,0.6373405] vs [0.5315,0.4685], chisq 311.4223
## Mismatched frequencies for 'X:113687692' f[T,C] = [0.3781061,0.6218939] vs [0.5458,0.4542], chisq 308.0776
## Mismatched frequencies for 'X:113747685' f[T,C] = [0.4002686,0.5997314] vs [0.5687,0.4313], chisq 313.2718
## Mismatched frequencies for 'X:113767219' f[T,C] = [0.0721961,0.9278039] vs [0.3364,0.6636], chisq 883.6634
## Mismatched frequencies for 'X:113768869' f[A,G] = [0.4257891,0.5742109] vs [0.5898,0.4102], chisq 300.454
## Mismatched frequencies for 'X:113897581' f[A,G] = [0.02686367,0.9731363] vs [0.3001,0.6999], chisq 1016.562
## Mismatched frequencies for 'X:114036809' f[T,C] = [0.1739422,0.8260577] vs [0.3885,0.6115], chisq 538.4331
## Mismatched frequencies for 'X:114056106' f[T,C] = [0.1773002,0.8226998] vs [0.3899,0.6101], chisq 527.7396
## Mismatched frequencies for 'X:114086293' f[G,A] = [0.1766286,0.8233714] vs [0.3905,0.6095], chisq 533.7836
## Mismatched frequencies for 'X:114138144' f[C,G] = [0.177636,0.822364] vs [0.3917,0.6083], chisq 534.0592
## Mismatched frequencies for 'X:114140485' f[G,T] = [0.1766286,0.8233714] vs [0.3889,0.6111], chisq 526.6734
## Mismatched frequencies for 'X:114219365' f[C,T] = [0.1779718,0.8220282] vs [0.3829,0.6171], chisq 493.8637
## Mismatched frequencies for 'X:114425400' f[G,A] = [0.2830759,0.7169241] vs [0.4733,0.5267], chisq 397.7245
## Mismatched frequencies for 'X:114426171' f[C,T] = [0.001007387,0.9989926] vs [0.2841,0.7159], chisq 1135.335
## Mismatched frequencies for 'X:114426917' f[C,T] = [0.2840833,0.7159167] vs [0.4731,0.5269], chisq 392.7051
## Mismatched frequencies for 'X:114749162' f[T,C] = [0.2619207,0.7380792] vs [0.4697,0.5303], chisq 475.4003
## Mismatched frequencies for 'X:114766346' f[C,T] = [0.5134319,0.4865681] vs [0.6924,0.3076], chisq 399.7905
## Mismatched frequencies for 'X:114806391' f[C,T] = [0.2199463,0.7800537] vs [0.4323,0.5677], chisq 506.869
## Mismatched frequencies for 'X:114956872' f[C,T] = [0.1037609,0.8962391] vs [0.3634,0.6366], chisq 817.627
## Mismatched frequencies for 'X:115020940' f[C,T] = [0.3102754,0.6897246] vs [0.5139,0.4861], chisq 452.4326
## Mismatched frequencies for 'X:115402527' f[A,G] = [0.2813969,0.7186031] vs [0.4899,0.5101], chisq 475.8029
## Mismatched frequencies for 'X:115488259' f[G,A] = [0.3035594,0.6964406] vs [0.517,0.483], chisq 497.0849
## Mismatched frequencies for 'X:115578634' f[G,A] = [0.016454,0.983546] vs [0.2912,0.7088], chisq 1049.326
## Mismatched frequencies for 'X:115627155' f[A,G] = [0.1323036,0.8676965] vs [0.3729,0.6271], chisq 691.6552
## Mismatched frequencies for 'X:115642226' f[A,G] = [0.3875084,0.6124916] vs [0.5567,0.4433], chisq 314.6154
## Mismatched frequencies for 'X:115654173' f[T,C] = [0.386501,0.613499] vs [0.5565,0.4435], chisq 317.5961
## Mismatched frequencies for 'X:115750294' f[G,T] = [0.4032908,0.5967092] vs [0.5846,0.4154], chisq 365.7258
## Mismatched frequencies for 'X:115794587' f[A,G] = [0.3169913,0.6830087] vs [0.5148,0.4852], chisq 426.945
## Mismatched frequencies for 'X:116057537' f[A,C] = [0.1245803,0.8754197] vs [0.3825,0.6175], chisq 786.7999
## Mismatched frequencies for 'X:116178545' f[T,C] = [0.01074547,0.9892545] vs [0.2993,0.7007], chisq 1139.051
## Mismatched frequencies for 'X:116310686' f[T,C] = [0.1440564,0.8559436] vs [0.397,0.603], chisq 744.055
## Mismatched frequencies for 'X:116363791' f[T,C] = [0.4657488,0.5342512] vs [0.6328,0.3672], chisq 322.698
## Mismatched frequencies for 'X:116381658' f[G,A] = [0.4550033,0.5449966] vs [0.6293,0.3707], chisq 349.8751
## Mismatched frequencies for 'X:116393532' f[G,A] = [0.453996,0.5460041] vs [0.6229,0.3771], chisq 326.7279
## Mismatched frequencies for 'X:116423255' f[T,G] = [0.01343183,0.9865681] vs [0.2999,0.7001], chisq 1120.682
## Mismatched frequencies for 'X:116542560' f[T,G] = [0.3841504,0.6158495] vs [0.5524,0.4476], chisq 310.695
## Mismatched frequencies for 'X:116675118' f[T,C] = [0.02719946,0.9728005] vs [0.2937,0.7063], chisq 979.9447
## Mismatched frequencies for 'X:117180867' f[A,G] = [0.07958361,0.9204164] vs [0.3486,0.6514], chisq 898.4528
## Mismatched frequencies for 'X:117317492' f[T,C] = [0.2239758,0.7760242] vs [0.4579,0.5421], chisq 606.3186
## Mismatched frequencies for 'X:117319820' f[C,T] = [0.2162525,0.7837475] vs [0.4484,0.5516], chisq 600.1721
## Mismatched frequencies for 'X:117332576' f[C,A] = [0.2068502,0.7931498] vs [0.4455,0.5545], chisq 635.5661
## Mismatched frequencies for 'X:117337058' f[T,C] = [0.02484889,0.9751511] vs [0.3118,0.6882], chisq 1096.06
## Mismatched frequencies for 'X:117345882' f[T,C] = [0.1729349,0.8270652] vs [0.4157,0.5843], chisq 672.5417
## Mismatched frequencies for 'X:117349685' f[T,C] = [0.1638684,0.8361316] vs [0.3981,0.6019], chisq 636.2596
## Mismatched frequencies for 'X:117351703' f[T,C] = [0.1917394,0.8082606] vs [0.4296,0.5704], chisq 638.1875
## Mismatched frequencies for 'X:117385565' f[A,G] = [0.3549362,0.6450638] vs [0.548,0.452], chisq 408.3523
## Mismatched frequencies for 'X:117405664' f[A,G] = [0.2770316,0.7229685] vs [0.4884,0.5116], chisq 489.1648
## Mismatched frequencies for 'X:117423478' f[T,C] = [0.1155138,0.8844863] vs [0.3709,0.6291], chisq 782.6135
## Mismatched frequencies for 'X:117624940' f[G,A] = [0.3730692,0.6269308] vs [0.5446,0.4554], chisq 322.2151
## Mismatched frequencies for 'X:117637568' f[G,A] = [0.3378106,0.6621894] vs [0.5279,0.4721], chisq 394.4921
## Mismatched frequencies for 'X:117688749' f[C,T] = [0.243452,0.7565481] vs [0.4589,0.5411], chisq 513.6785
## Mismatched frequencies for 'X:117791956' f[C,T] = [0.207186,0.792814] vs [0.4149,0.5851], chisq 491.4407
## Mismatched frequencies for 'X:117792437' f[G,A] = [0.1057757,0.8942243] vs [0.3532,0.6468], chisq 752.5124
## Mismatched frequencies for 'X:117832367' f[C,T] = [0.1406985,0.8593016] vs [0.3962,0.6038], chisq 760.0004
## Mismatched frequencies for 'X:117886036' f[C,T] = [0.08663533,0.9133647] vs [0.3479,0.6521], chisq 847.4864
## Mismatched frequencies for 'X:118114595' f[A,G] = [0.1658831,0.8341169] vs [0.409,0.591], chisq 678.6206
## Mismatched frequencies for 'X:118165092' f[T,G] = [0.1625252,0.8374748] vs [0.4125,0.5875], chisq 715.5099
## Mismatched frequencies for 'X:118174037' f[A,G] = [0.1652116,0.8347884] vs [0.4208,0.5792], chisq 742.9002
## Mismatched frequencies for 'X:118291392' f[T,C] = [0.03693754,0.9630625] vs [0.3192,0.6808], chisq 1043.984
## Mismatched frequencies for 'X:118325423' f[G,A] = [0.02619207,0.9738079] vs [0.3107,0.6893], chisq 1079.481
## Mismatched frequencies for 'X:118485219' f[G,A] = [0.09100067,0.9089993] vs [0.3408,0.6592], chisq 782.4785
## Mismatched frequencies for 'X:118504453' f[T,C] = [0.02048355,0.9795164] vs [0.2929,0.7071], chisq 1027.025
## Mismatched frequencies for 'X:118534119' f[G,A] = [0.2887844,0.7112156] vs [0.4772,0.5228], chisq 389.6805
## Mismatched frequencies for 'X:118544448' f[T,C] = [0.07018133,0.9298187] vs [0.3226,0.6774], chisq 825.4507
## Mismatched frequencies for 'X:118567702' f[T,C] = [0.2535258,0.7464741] vs [0.4512,0.5488], chisq 433.7815
## Mismatched frequencies for 'X:118693279' f[G,A] = [0.3250504,0.6749496] vs [0.5052,0.4948], chisq 354.253
## Mismatched frequencies for 'X:118703075' f[C,T] = [0.2934855,0.7065144] vs [0.4787,0.5213], chisq 376.3496
## Mismatched frequencies for 'X:118722024' f[G,T] = [0.3230356,0.6769644] vs [0.5016,0.4984], chisq 348.1586
## Mismatched frequencies for 'X:118744432' f[G,T] = [0.2266622,0.7733378] vs [0.4374,0.5626], chisq 497.4046
## Mismatched frequencies for 'X:118749139' f[T,C] = [0.2155809,0.7844191] vs [0.4287,0.5713], chisq 511.8797
## Mismatched frequencies for 'X:118865122' f[G,A] = [0.3226998,0.6773002] vs [0.5472,0.4528], chisq 551.7039
## Mismatched frequencies for 'X:118868942' f[G,A] = [0.4536602,0.5463398] vs [0.6402,0.3598], chisq 404.7895
## Mismatched frequencies for 'X:118886604' f[T,C] = [0.2427804,0.7572196] vs [0.4609,0.5391], chisq 526.0551
## Mismatched frequencies for 'X:118888586' f[C,T] = [0.2770316,0.7229685] vs [0.4801,0.5199], chisq 452.4176
## Mismatched frequencies for 'X:118893137' f[T,C] = [0.3542646,0.6457354] vs [0.5402,0.4598], chisq 378.1378
## Mismatched frequencies for 'X:118895641' f[T,G] = [0.3875084,0.6124916] vs [0.56,0.44], chisq 327.3588
## Mismatched frequencies for 'X:118907637' f[G,A] = [0.5057085,0.4942915] vs [0.6871,0.3129], chisq 407.11
## Mismatched frequencies for 'X:119159256' f[T,C] = [0.03861652,0.9613835] vs [0.3013,0.6987], chisq 935.2338
## Mismatched frequencies for 'X:119356133' f[C,A] = [0.1823371,0.8176628] vs [0.4102,0.5898], chisq 594.7652
## Mismatched frequencies for 'X:119389966' f[C,T] = [0.3106112,0.6893889] vs [0.504,0.496], chisq 408.3182
## Mismatched frequencies for 'X:119395677' f[C,T] = [0.3750839,0.6249161] vs [0.5463,0.4537], chisq 321.1717
## Mismatched frequencies for 'X:119503451' f[G,A] = [0.4775017,0.5224983] vs [0.6469,0.3531], chisq 336.821
## Mismatched frequencies for 'X:119511311' f[G,A] = [0.4563465,0.5436535] vs [0.6269,0.3731], chisq 334.3397
## Mismatched frequencies for 'X:119536591' f[T,C] = [0.4096709,0.5903291] vs [0.5785,0.4215], chisq 316.2394
## Mismatched frequencies for 'X:119664545' f[C,T] = [0.3713902,0.6286098] vs [0.5481,0.4519], chisq 342.233
## Mismatched frequencies for 'X:119842752' f[G,T] = [0.1648758,0.8351243] vs [0.3951,0.6049], chisq 616.3903
## Mismatched frequencies for 'X:119849032' f[T,C] = [0.0564137,0.9435863] vs [0.3145,0.6855], chisq 877.4372
## Mismatched frequencies for 'X:119852817' f[A,C] = [0.07958361,0.9204164] vs [0.3263,0.6737], chisq 782.4733
## Mismatched frequencies for 'X:119877881' f[G,A] = [0.2206179,0.7793821] vs [0.4285,0.5715], chisq 486.9463
## Mismatched frequencies for 'X:119904393' f[T,C] = [0.3482203,0.6517797] vs [0.5282,0.4718], chisq 353.6875
## Mismatched frequencies for 'X:119933081' f[C,T] = [0.1571524,0.8428475] vs [0.3831,0.6169], chisq 601.4669
## Mismatched frequencies for 'X:119944165' f[G,A] = [0.1897246,0.8102754] vs [0.4195,0.5805], chisq 599.9842
## Mismatched frequencies for 'X:120171335' f[T,C] = [0.03055742,0.9694426] vs [0.3048,0.6952], chisq 1013.76
## Mismatched frequencies for 'X:120261350' f[T,C] = [0.3730692,0.6269308] vs [0.5437,0.4563], chisq 318.7798
## Mismatched frequencies for 'X:120371989' f[C,T] = [0.4301545,0.5698456] vs [0.6091,0.3909], chisq 362.2156
## Mismatched frequencies for 'X:120377132' f[T,C] = [0.2961719,0.7038281] vs [0.5005,0.4995], chisq 456.0516
## Mismatched frequencies for 'X:120427950' f[T,C] = [0.0245131,0.9754869] vs [0.2951,0.7049], chisq 1007.769
## Mismatched frequencies for 'X:120599945' f[G,A] = [0.2125588,0.7874412] vs [0.4378,0.5622], chisq 568.5338
## Mismatched frequencies for 'X:120971710' f[A,G] = [0.3213566,0.6786434] vs [0.5165,0.4835], chisq 415.5114
## Mismatched frequencies for 'X:121029926' f[A,G] = [0.1296172,0.8703828] vs [0.3741,0.6259], chisq 713.3787
## Mismatched frequencies for 'X:121088651' f[C,G] = [0.1752854,0.8247146] vs [0.4174,0.5826], chisq 667.9238
## Mismatched frequencies for 'X:121502982' f[C,T] = [0.06816655,0.9318334] vs [0.3314,0.6686], chisq 884.7877
## Mismatched frequencies for 'X:121503136' f[A,G] = [0.2521827,0.7478173] vs [0.4875,0.5125], chisq 606.7304
## Mismatched frequencies for 'X:121503432' f[A,G] = [0.04398926,0.9560108] vs [0.3118,0.6882], chisq 951.5585
## Mismatched frequencies for 'X:121520007' f[A,C] = [0.0799194,0.9200806] vs [0.3405,0.6595], chisq 853.1891
## Mismatched frequencies for 'X:121541208' f[T,C] = [0.07320349,0.9267965] vs [0.3288,0.6712], chisq 837.1359
## Mismatched frequencies for 'X:121546704' f[C,T] = [0.3287441,0.6712559] vs [0.5233,0.4767], chisq 413.0931
## Mismatched frequencies for 'X:121551623' f[C,T] = [0.08327737,0.9167227] vs [0.3353,0.6647], chisq 804.1648
## Mismatched frequencies for 'X:121567382' f[G,A] = [0.3314305,0.6685695] vs [0.5383,0.4617], chisq 467.7667
## Mismatched frequencies for 'X:121574077' f[T,C] = [0.09267965,0.9073203] vs [0.3403,0.6597], chisq 769.2915
## Mismatched frequencies for 'X:121579673' f[G,A] = [0.2414372,0.7585628] vs [0.4547,0.5453], chisq 504.3172
## Mismatched frequencies for 'X:121585278' f[C,T] = [0.1276024,0.8723976] vs [0.372,0.628], chisq 714.8119
## Mismatched frequencies for 'X:121761189' f[G,A] = [0.3401612,0.6598388] vs [0.5349,0.4651], chisq 414.36
## Mismatched frequencies for 'X:121804192' f[A,G] = [0.06883815,0.9311619] vs [0.3403,0.6597], chisq 927.6639
## Mismatched frequencies for 'X:121837051' f[G,A] = [0.3784419,0.6215581] vs [0.5759,0.4241], chisq 431.4988
## Mismatched frequencies for 'X:121972773' f[C,T] = [0.4395567,0.5604432] vs [0.6226,0.3774], chisq 383.2023
## Mismatched frequencies for 'X:121980825' f[T,C] = [0.434184,0.565816] vs [0.6142,0.3858], chisq 368.0389
## Mismatched frequencies for 'X:122076020' f[C,A] = [0.1010745,0.8989254] vs [0.3538,0.6462], chisq 784.9201
## Mismatched frequencies for 'X:122098514' f[A,C] = [0.0893217,0.9106783] vs [0.3468,0.6532], chisq 824.1236
## Mismatched frequencies for 'X:122213876' f[C,T] = [0.2699799,0.7300202] vs [0.4774,0.5226], chisq 472.4644
## Mismatched frequencies for 'X:122326318' f[T,C] = [0.2390866,0.7609134] vs [0.4593,0.5407], chisq 536.6533
## Mismatched frequencies for 'X:122352835' f[A,G] = [0.07723304,0.922767] vs [0.3349,0.6651], chisq 841.8613
## Mismatched frequencies for 'X:122354683' f[G,A] = [0.1155138,0.8844863] vs [0.3707,0.6293], chisq 781.5781
## Mismatched frequencies for 'X:122358869' f[C,A] = [0.3653459,0.6346541] vs [0.5555,0.4445], chisq 397.0171
## Mismatched frequencies for 'X:122364962' f[A,C] = [0.3777703,0.6222297] vs [0.56,0.44], chisq 365.2557
## Mismatched frequencies for 'X:122386057' f[A,G] = [0.3653459,0.6346541] vs [0.5514,0.4486], chisq 379.649
## Mismatched frequencies for 'X:122429119' f[A,G] = [0.258227,0.741773] vs [0.4503,0.5497], chisq 409.641
## Mismatched frequencies for 'X:122441479' f[G,A] = [0.2867697,0.7132304] vs [0.4812,0.5188], chisq 414.5272
## Mismatched frequencies for 'X:122503729' f[A,G] = [0.1836803,0.8163197] vs [0.4089,0.5911], chisq 581.6234
## Mismatched frequencies for 'X:122515696' f[A,G] = [0.03626595,0.963734] vs [0.315,0.685], chisq 1025.991
## Mismatched frequencies for 'X:122531872' f[C,T] = [0.06077905,0.939221] vs [0.3223,0.6777], chisq 887.8441
## Mismatched frequencies for 'X:122570930' f[A,C] = [0.1712559,0.8287441] vs [0.4157,0.5843], chisq 681.9608
## Mismatched frequencies for 'X:122576606' f[A,G] = [0.2149093,0.7850907] vs [0.4514,0.5486], chisq 621.905
## Mismatched frequencies for 'X:122579104' f[A,C] = [0.1165212,0.8834788] vs [0.3671,0.6329], chisq 756.8702
## Mismatched frequencies for 'X:122595993' f[C,T] = [0.05574211,0.9442579] vs [0.3144,0.6856], chisq 881.5895
## Mismatched frequencies for 'X:122628259' f[T,C] = [0.0245131,0.9754869] vs [0.3038,0.6962], chisq 1054.646
## Mismatched frequencies for 'X:122644988' f[A,C] = [0.4163868,0.5836132] vs [0.5902,0.4098], chisq 337.3525
## Mismatched frequencies for 'X:122660050' f[A,C] = [0.1208865,0.8791135] vs [0.3673,0.6327], chisq 731.3701
## Mismatched frequencies for 'X:122692171' f[T,C] = [0.3549362,0.6450638] vs [0.5248,0.4752], chisq 314.9703
## Mismatched frequencies for 'X:122876619' f[G,A] = [0.2652787,0.7347213] vs [0.4762,0.5238], chisq 488.7886
## Mismatched frequencies for 'X:122928082' f[T,G] = [0.3952317,0.6047683] vs [0.5842,0.4158], chisq 397.0447
## Mismatched frequencies for 'X:122928528' f[C,T] = [0.08462055,0.9153795] vs [0.3335,0.6665], chisq 786.3236
## Mismatched frequencies for 'X:122942431' f[G,A] = [0.1504365,0.8495635] vs [0.3834,0.6166], chisq 639.6169
## Mismatched frequencies for 'X:122944839' f[G,A] = [0.2454668,0.7545332] vs [0.4619,0.5381], chisq 517.6798
## Mismatched frequencies for 'X:122958467' f[T,C] = [0.468771,0.531229] vs [0.6368,0.3632], chisq 327.8013
## Mismatched frequencies for 'X:122970766' f[A,G] = [0.1302888,0.8697112] vs [0.3741,0.6259], chisq 709.4135
## Mismatched frequencies for 'X:123131239' f[G,A] = [0.07891202,0.921088] vs [0.3245,0.6755], chisq 777.7731
## Mismatched frequencies for 'X:123204486' f[G,T] = [0.4503022,0.5496978] vs [0.6301,0.3699], chisq 372.4312
## Mismatched frequencies for 'X:123250497' f[G,A] = [0.2199463,0.7800537] vs [0.4611,0.5389], chisq 643.5554
## Mismatched frequencies for 'X:123309357' f[G,A] = [0.3498993,0.6501008] vs [0.5443,0.4557], chisq 413.649
## Mismatched frequencies for 'X:123342874' f[T,C] = [0.5278711,0.472129] vs [0.6904,0.3096], chisq 329.3874
## Mismatched frequencies for 'X:123372017' f[A,G] = [0.2907992,0.7092008] vs [0.4863,0.5137], chisq 418.5541
## Mismatched frequencies for 'X:123438153' f[G,A] = [0.04231028,0.9576897] vs [0.3038,0.6962], chisq 921.5268
## Mismatched frequencies for 'X:123457841' f[C,T] = [0.1692411,0.8307589] vs [0.3868,0.6132], chisq 554.8133
## Mismatched frequencies for 'X:123507894' f[C,T] = [0.04600403,0.9539959] vs [0.3131,0.6869], chisq 943.8633
## Mismatched frequencies for 'X:123536223' f[G,A] = [0.4042982,0.5957018] vs [0.5694,0.4306], chisq 301.1404
## Mismatched frequencies for 'X:123549333' f[T,C] = [0.01343183,0.9865681] vs [0.2894,0.7106], chisq 1063.484
## Mismatched frequencies for 'X:123555621' f[C,G] = [0.3901948,0.6098052] vs [0.5875,0.4125], chisq 433.4909
## Mismatched frequencies for 'X:123590006' f[G,T] = [0.2031565,0.7968435] vs [0.4424,0.5576], chisq 639.9879
## Mismatched frequencies for 'X:123613551' f[G,A] = [0.3431833,0.6568167] vs [0.5117,0.4883], chisq 309.8643
## Mismatched frequencies for 'X:123680082' f[T,C] = [0.08159839,0.9184016] vs [0.3369,0.6631], chisq 823.3512
## Mismatched frequencies for 'X:124186142' f[T,C] = [0.009066488,0.9909335] vs [0.292,0.708], chisq 1112.504
## Mismatched frequencies for 'X:124219165' f[C,T] = [0.03458697,0.965413] vs [0.3019,0.6981], chisq 968.0417
## Mismatched frequencies for 'X:124261531' f[C,T] = [0.1514439,0.8485561] vs [0.3904,0.6096], chisq 667.9621
## Mismatched frequencies for 'X:124268338' f[A,C] = [0.2723304,0.7276696] vs [0.4913,0.5087], chisq 524.7108
## Mismatched frequencies for 'X:124276789' f[T,C] = [0.2578912,0.7421088] vs [0.4652,0.5348], chisq 474.1035
## Mismatched frequencies for 'X:124302565' f[A,G] = [0.4580255,0.5419745] vs [0.6225,0.3775], chisq 309.8077
## Mismatched frequencies for 'X:124327660' f[G,T] = [0.3969107,0.6030893] vs [0.5752,0.4248], chisq 351.9428
## Mismatched frequencies for 'X:124394761' f[A,G] = [0.1893889,0.8106111] vs [0.4241,0.5759], chisq 623.9116
## Mismatched frequencies for 'X:124395833' f[G,A] = [0.1910678,0.8089322] vs [0.419,0.581], chisq 590.567
## Mismatched frequencies for 'X:124496835' f[A,G] = [0.4026192,0.5973808] vs [0.5677,0.4323], chisq 300.8374
## Mismatched frequencies for 'X:124539242' f[C,T] = [0.3495635,0.6504365] vs [0.5328,0.4672], chisq 366.7971
## Mismatched frequencies for 'X:124564413' f[G,A] = [0.2726662,0.7273338] vs [0.475,0.525], chisq 449.8701
## Mismatched frequencies for 'X:124572254' f[A,G] = [0.2642713,0.7357287] vs [0.4618,0.5382], chisq 430.9062
## Mismatched frequencies for 'X:124604731' f[C,A] = [0.2367361,0.7632639] vs [0.4445,0.5555], chisq 481.2396
## Mismatched frequencies for 'X:124624726' f[T,C] = [0.3032236,0.6967763] vs [0.4815,0.5185], chisq 348.3487
## Mismatched frequencies for 'X:124660471' f[G,T] = [0.2535258,0.7464741] vs [0.4395,0.5605], chisq 386.3362
## Mismatched frequencies for 'X:124682585' f[G,C] = [0.03055742,0.9694426] vs [0.2954,0.7046], chisq 963.7057
## Mismatched frequencies for 'X:124727521' f[T,G] = [0.3341169,0.6658831] vs [0.5212,0.4788], chisq 381.9414
## Mismatched frequencies for 'X:124732971' f[C,T] = [0.3331095,0.6668905] vs [0.9546,0.0454], chisq 11961.6
## Mismatched frequencies for 'X:124813248' f[A,G] = [0.02719946,0.9728005] vs [0.2942,0.7058], chisq 982.5853
## Mismatched frequencies for 'X:125048452' f[C,T] = [0.016454,0.983546] vs [0.3,0.7], chisq 1097.085
## Mismatched frequencies for 'X:125060265' f[T,C] = [0.2679651,0.7320349] vs [0.4844,0.5156], chisq 513.4722
## Mismatched frequencies for 'X:125084224' f[T,C] = [0.3163197,0.6836803] vs [0.5175,0.4825], chisq 441.6182
## Mismatched frequencies for 'X:125487171' f[A,G] = [0.3509066,0.6490933] vs [0.5522,0.4478], chisq 444.3271
## Mismatched frequencies for 'X:125529604' f[C,T] = [0.3912022,0.6087978] vs [0.5857,0.4143], chisq 420.8658
## Mismatched frequencies for 'X:125581882' f[T,C] = [0.3646743,0.6353257] vs [0.5838,0.4162], chisq 533.0333
## Mismatched frequencies for 'X:125636162' f[T,C] = [0.583949,0.416051] vs [0.7352,0.2648], chisq 311.2466
## Mismatched frequencies for 'X:125643773' f[T,C] = [0.5826058,0.4173942] vs [0.7377,0.2623], chisq 328.8615
## Mismatched frequencies for 'X:125667479' f[A,G] = [0.03357958,0.9664204] vs [0.3102,0.6898], chisq 1020.111
## Mismatched frequencies for 'X:125792500' f[T,G] = [0.03794493,0.9620551] vs [0.3182,0.6818], chisq 1030.875
## Mismatched frequencies for 'X:125847712' f[T,C] = [0,1] vs [0.2914,0.7086], chisq 1183.757
## Mismatched frequencies for 'X:125953932' f[A,G] = [0.1621894,0.8378106] vs [0.3975,0.6025], chisq 642.5948
## Mismatched frequencies for 'X:125957069' f[A,C] = [0.1846877,0.8153123] vs [0.4143,0.5857], chisq 601.7959
## Mismatched frequencies for 'X:126012422' f[T,C] = [0.01477502,0.985225] vs [0.2887,0.7113], chisq 1049.123
## Mismatched frequencies for 'X:126069141' f[G,A] = [0.1235729,0.8764271] vs [0.3649,0.6351], chisq 703.3804
## Mismatched frequencies for 'X:126742422' f[A,G] = [0.08697112,0.9130289] vs [0.3473,0.6527], chisq 842.123
## Mismatched frequencies for 'X:126778904' f[C,T] = [0.3149765,0.6850235] vs [0.5102,0.4898], chisq 415.9166
## Mismatched frequencies for 'X:126829971' f[A,G] = [0.4130289,0.5869711] vs [0.5808,0.4192], chisq 312.6864
## Mismatched frequencies for 'X:126987705' f[A,G] = [0.0161182,0.9838818] vs [0.2934,0.7066], chisq 1063.811
## Mismatched frequencies for 'X:127135841' f[A,G] = [0.08260578,0.9173942] vs [0.3419,0.6581], chisq 842.6714
## Mismatched frequencies for 'X:127386493' f[G,A] = [0.2283412,0.7716588] vs [0.452,0.548], chisq 555.7337
## Mismatched frequencies for 'X:127532107' f[G,A] = [0.0886501,0.9113499] vs [0.3447,0.6553], chisq 817.5989
## Mismatched frequencies for 'X:127557442' f[C,T] = [0.1695769,0.8304231] vs [0.4122,0.5878], chisq 673.8479
## Mismatched frequencies for 'X:127770854' f[T,C] = [0.07085292,0.9291471] vs [0.333,0.667], chisq 874.8697
## Mismatched frequencies for 'X:127794363' f[T,C] = [0.3190061,0.680994] vs [0.504,0.496], chisq 373.6129
## Mismatched frequencies for 'X:127896299' f[C,T] = [0.1608462,0.8391538] vs [0.401,0.599], chisq 667.1992
## Mismatched frequencies for 'X:127933383' f[C,T] = [0.2511753,0.7488247] vs [0.4661,0.5339], chisq 509.5218
## Mismatched frequencies for 'X:127947716' f[C,T] = [0.08495635,0.9150436] vs [0.3487,0.6513], chisq 862.8377
## Mismatched frequencies for 'X:128053026' f[T,C] = [0.03861652,0.9613835] vs [0.3026,0.6974], chisq 942.0593
## Mismatched frequencies for 'X:128053082' f[G,A] = [0.1390195,0.8609805] vs [0.374,0.626], chisq 658.4149
## Mismatched frequencies for 'X:128123968' f[G,A] = [0.3697112,0.6302888] vs [0.5532,0.4468], chisq 369.4721
## Mismatched frequencies for 'X:128171413' f[T,C] = [0.3451981,0.6548019] vs [0.5368,0.4632], chisq 401.2546
## Mismatched frequencies for 'X:128177617' f[C,T] = [0.3774345,0.6225655] vs [0.5592,0.4408], chisq 363.2984
## Mismatched frequencies for 'X:128186756' f[T,C] = [0.1474144,0.8525856] vs [0.3838,0.6162], chisq 658.4594
## Mismatched frequencies for 'X:128198305' f[C,T] = [0.406313,0.5936871] vs [0.5742,0.4258], chisq 312.0536
## Mismatched frequencies for 'X:128252018' f[G,A] = [0.2830759,0.7169241] vs [0.4986,0.5014], chisq 507.608
## Mismatched frequencies for 'X:128276877' f[T,G] = [0.3509066,0.6490933] vs [0.5343,0.4657], chisq 367.5047
## Mismatched frequencies for 'X:128281852' f[A,G] = [0.1312962,0.8687038] vs [0.3814,0.6186], chisq 740.2333
## Mismatched frequencies for 'X:128745520' f[C,G] = [0.162861,0.837139] vs [0.3913,0.6087], chisq 609.2585
## Mismatched frequencies for 'X:128871920' f[A,G] = [0.2904634,0.7095366] vs [0.4797,0.5203], chisq 392.7967
## Mismatched frequencies for 'X:128914508' f[T,C] = [0.03290799,0.967092] vs [0.3042,0.6958], chisq 992.8184
## Mismatched frequencies for 'X:128948511' f[T,C] = [0.1631968,0.8368032] vs [0.429,0.571], chisq 798.7253
## Mismatched frequencies for 'X:129445772' f[A,G] = [0.4076561,0.5923439] vs [0.5819,0.4181], chisq 337.3816
## Mismatched frequencies for 'X:129977520' f[C,T] = [0.02350571,0.9764943] vs [0.2893,0.7107], chisq 984.7406
## Mismatched frequencies for 'X:130028766' f[T,C] = [0.213902,0.7860981] vs [0.4212,0.5788], chisq 486.9144
## Mismatched frequencies for 'X:130245761' f[G,A] = [0.2411014,0.7588986] vs [0.4598,0.5402], chisq 529.1373
## Mismatched frequencies for 'X:130278783' f[T,C] = [0.1460712,0.8539288] vs [0.386,0.614], chisq 676.8434
## Mismatched frequencies for 'X:130412178' f[C,G] = [0.406313,0.5936871] vs [0.5725,0.4275], chisq 305.5368
## Mismatched frequencies for 'X:130416958' f[C,T] = [0.0006715917,0.9993284] vs [0.2853,0.7147], chisq 1144.641
## Mismatched frequencies for 'X:130420006' f[T,C] = [0.0003357958,0.9996642] vs [0.2831,0.7169], chisq 1135.456
## Mismatched frequencies for 'X:130550306' f[C,T] = [0.3321021,0.6678979] vs [0.5238,0.4762], chisq 401.0633
## Mismatched frequencies for 'X:130625983' f[A,G] = [0.3737408,0.6262592] vs [0.5529,0.4471], chisq 352.2486
## Mismatched frequencies for 'X:130678844' f[A,C] = [0.3687038,0.6312962] vs [0.5521,0.4479], chisq 368.9784
## Mismatched frequencies for 'X:130761442' f[A,G] = [0.3297515,0.6702485] vs [0.5183,0.4817], chisq 387.9108
## Mismatched frequencies for 'X:130779350' f[C,T] = [0.0809268,0.9190732] vs [0.3313,0.6687], chisq 799.0522
## Mismatched frequencies for 'X:130813085' f[A,G] = [0.09771658,0.9022834] vs [0.3519,0.6481], chisq 796.4472
## Mismatched frequencies for 'X:130962841' f[A,G] = [0.205507,0.794493] vs [0.4305,0.5695], chisq 570.1715
## Mismatched frequencies for 'X:131122443' f[A,G] = [0.05003358,0.9499664] vs [0.3262,0.6738], chisq 985.1045
## Mismatched frequencies for 'X:131446383' f[T,C] = [0.1752854,0.8247146] vs [0.3893,0.6107], chisq 535.2093
## Mismatched frequencies for 'X:131487273' f[C,T] = [0.01981195,0.9801881] vs [0.2904,0.7096], chisq 1018.892
## Mismatched frequencies for 'X:131578034' f[A,G] = [0.3901948,0.6098052] vs [0.5794,0.4206], chisq 397.0128
## Mismatched frequencies for 'X:131850355' f[A,C] = [0.1699127,0.8300873] vs [0.383,0.617], chisq 534.3356
## Mismatched frequencies for 'X:132118996' f[T,C] = [0.1370047,0.8629953] vs [0.3612,0.6388], chisq 608.967
## Mismatched frequencies for 'X:132931055' f[C,T] = [0.01981195,0.9801881] vs [0.2912,0.7088], chisq 1023.151
## Mismatched frequencies for 'X:132935739' f[C,T] = [0.245131,0.754869] vs [0.461,0.539], chisq 515.1863
## Mismatched frequencies for 'X:133144664' f[C,T] = [0.3999328,0.6000671] vs [0.5827,0.4173], chisq 371.2127
## Mismatched frequencies for 'X:133265189' f[G,T] = [0.5228341,0.4771659] vs [0.7169,0.2831], chisq 489.7661
## Mismatched frequencies for 'X:133456998' f[G,A] = [0.05473472,0.9452653] vs [0.3209,0.6791], chisq 922.8119
## Mismatched frequencies for 'X:133500700' f[A,G] = [0.2521827,0.7478173] vs [0.4624,0.5376], chisq 488.1461
## Mismatched frequencies for 'X:133542487' f[T,C] = [0.1027535,0.8972465] vs [0.3499,0.6501], chisq 754.5942
## Mismatched frequencies for 'X:133673516' f[A,G] = [0.2629281,0.7370719] vs [0.4882,0.5118], chisq 555.8175
## Mismatched frequencies for 'X:133707732' f[C,T] = [0.3559436,0.6440564] vs [0.5541,0.4459], chisq 430.859
## Mismatched frequencies for 'X:133731503' f[A,G] = [0.2985225,0.7014775] vs [0.4869,0.5131], chisq 388.4983
## Mismatched frequencies for 'X:133765719' f[G,A] = [0.4126931,0.5873069] vs [0.6018,0.3982], chisq 402.0733
## Mismatched frequencies for 'X:133827868' f[G,A] = [0.2293486,0.7706515] vs [0.4799,0.5201], chisq 689.6369
## Mismatched frequencies for 'X:133860424' f[A,G] = [0.2196105,0.7803895] vs [0.4634,0.5366], chisq 657.0564
## Mismatched frequencies for 'X:133881885' f[C,T] = [0.3596374,0.6403627] vs [0.572,0.428], chisq 497.9173
## Mismatched frequencies for 'X:134078524' f[T,C] = [0.1725991,0.8274009] vs [0.4057,0.5943], chisq 625.315
## Mismatched frequencies for 'X:134087204' f[T,C] = [0.144728,0.855272] vs [0.3887,0.6113], chisq 697.959
## Mismatched frequencies for 'X:134088268' f[C,G] = [0.1836803,0.8163197] vs [0.4184,0.5816], chisq 626.879
## Mismatched frequencies for 'X:134140870' f[C,T] = [0.261585,0.7384151] vs [0.4745,0.5255], chisq 498.3913
## Mismatched frequencies for 'X:134204829' f[T,C] = [0.2787105,0.7212895] vs [0.4878,0.5122], chisq 478.7198
## Mismatched frequencies for 'X:134477613' f[A,C] = [0.2649429,0.7350571] vs [0.4835,0.5165], chisq 523.7468
## Mismatched frequencies for 'X:134625043' f[T,C] = [0.4452653,0.5547347] vs [0.6148,0.3852], chisq 326.8313
## Mismatched frequencies for 'X:134650924' f[T,C] = [0.04768301,0.952317] vs [0.3203,0.6797], chisq 970.2288
## Mismatched frequencies for 'X:134660167' f[G,A] = [0.01813297,0.981867] vs [0.2937,0.7063], chisq 1049.608
## Mismatched frequencies for 'X:134757482' f[A,G] = [0.0799194,0.9200806] vs [0.3438,0.6562], chisq 870.5747
## Mismatched frequencies for 'X:134823362' f[T,C] = [0.07085292,0.9291471] vs [0.3366,0.6634], chisq 893.908
## Mismatched frequencies for 'X:134910394' f[A,G] = [0.1662189,0.8337811] vs [0.4047,0.5953], chisq 655.4335
## Mismatched frequencies for 'X:135055694' f[T,C] = [0.1601746,0.8398254] vs [0.4008,0.5992], chisq 669.9845
## Mismatched frequencies for 'X:135213329' f[T,G] = [0.230356,0.7696441] vs [0.4731,0.5269], chisq 648.747
## Mismatched frequencies for 'X:135221358' f[G,A] = [0.2065144,0.7934856] vs [0.4585,0.5415], chisq 703.8879
## Mismatched frequencies for 'X:135250115' f[A,G] = [0.2061786,0.7938213] vs [0.4564,0.5436], chisq 694.7674
## Mismatched frequencies for 'X:135254670' f[A,G] = [0.2061786,0.7938213] vs [0.4564,0.5436], chisq 694.7674
## Mismatched frequencies for 'X:135310785' f[T,C] = [0.4503022,0.5496978] vs [0.6175,0.3825], chisq 318.668
## Mismatched frequencies for 'X:135313034' f[T,G] = [0.4503022,0.5496978] vs [0.6138,0.3862], chisq 303.8443
## Mismatched frequencies for 'X:135343527' f[A,G] = [0.4486232,0.5513768] vs [0.6154,0.3846], chisq 316.5056
## Mismatched frequencies for 'X:135664064' f[C,T] = [0.3774345,0.6225655] vs [0.563,0.437], chisq 379.1333
## Mismatched frequencies for 'X:135681110' f[C,T] = [0.1971122,0.8028879] vs [0.434,0.566], chisq 630.9173
## Mismatched frequencies for 'X:135885110' f[A,G] = [0.2092008,0.7907992] vs [0.461,0.539], chisq 701.9656
## Mismatched frequencies for 'X:135929750' f[G,A] = [0.258227,0.741773] vs [0.4599,0.5401], chisq 449.6354
## Mismatched frequencies for 'X:136055295' f[T,C] = [0.03324379,0.9667562] vs [0.3124,0.6876], chisq 1034.639
## Mismatched frequencies for 'X:136113464' f[C,A] = [0.4798523,0.5201477] vs [0.6496,0.3504], chisq 339.2569
## Mismatched frequencies for 'X:136145041' f[G,A] = [0.501679,0.498321] vs [0.6664,0.3336], chisq 326.4479
## Mismatched frequencies for 'X:136193136' f[C,T] = [0.0648086,0.9351914] vs [0.3318,0.6682], chisq 910.0938
## Mismatched frequencies for 'X:136251517' f[T,C] = [0.016454,0.983546] vs [0.2957,0.7043], chisq 1073.615
## Mismatched frequencies for 'X:136268740' f[G,A] = [0.2602418,0.7397582] vs [0.4724,0.5276], chisq 495.2155
## Mismatched frequencies for 'X:136314814' f[G,A] = [0.4546676,0.5453324] vs [0.621,0.379], chisq 316.3721
## Mismatched frequencies for 'X:136350963' f[G,A] = [0.0967092,0.9032908] vs [0.3729,0.6271], chisq 915.0102
## Mismatched frequencies for 'X:136354195' f[A,G] = [0.06010745,0.9398925] vs [0.342,0.658], chisq 998.9399
## Mismatched frequencies for 'X:136374461' f[A,G] = [0.221961,0.778039] vs [0.459,0.541], chisq 622.3128
## Mismatched frequencies for 'X:136434254' f[A,G] = [0.02316991,0.9768301] vs [0.3112,0.6888], chisq 1105.904
## Mismatched frequencies for 'X:136450688' f[G,T] = [0.4986568,0.5013432] vs [0.6675,0.3325], chisq 343.3404
## Mismatched frequencies for 'X:136505579' f[T,C] = [0.4435863,0.5564137] vs [0.6228,0.3772], chisq 367.5085
## Mismatched frequencies for 'X:136524247' f[A,G] = [0.3203492,0.6796508] vs [0.5091,0.4909], chisq 388.8051
## Mismatched frequencies for 'X:136537452' f[G,A] = [0.3216924,0.6783076] vs [0.5093,0.4907], chisq 384.1037
## Mismatched frequencies for 'X:136598435' f[T,C] = [0.2172599,0.7827401] vs [0.444,0.556], chisq 573.8892
## Mismatched frequencies for 'X:136657017' f[T,C] = [0.2511753,0.7488247] vs [0.4634,0.5366], chisq 497.3296
## Mismatched frequencies for 'X:136675798' f[C,T] = [0.4402283,0.5597717] vs [0.6161,0.3839], chisq 351.9482
## Mismatched frequencies for 'X:136783739' f[A,G] = [0.1863667,0.8136333] vs [0.4233,0.5767], chisq 636.2827
## Mismatched frequencies for 'X:136803210' f[A,G] = [0.4466084,0.5533915] vs [0.6095,0.3905], chisq 300.5528
## Mismatched frequencies for 'X:136937083' f[A,G] = [0.2273338,0.7726662] vs [0.4481,0.5519], chisq 542.5606
## Mismatched frequencies for 'X:136971511' f[T,C] = [0.161182,0.838818] vs [0.4034,0.5966], chisq 677.2081
## Mismatched frequencies for 'X:137000267' f[A,G] = [0.1326393,0.8673606] vs [0.3747,0.6253], chisq 698.596
## Mismatched frequencies for 'X:137002815' f[C,T] = [0.3992612,0.6007388] vs [0.5748,0.4252], chisq 341.1394
## Mismatched frequencies for 'X:137078796' f[G,C] = [0.04331766,0.9566823] vs [0.3161,0.6839], chisq 979.4935
## Mismatched frequencies for 'X:137154059' f[C,G] = [0.02350571,0.9764943] vs [0.3049,0.6951], chisq 1068.479
## Mismatched frequencies for 'X:137300170' f[G,C] = [0.02518469,0.9748153] vs [0.3113,0.6887], chisq 1090.657
## Mismatched frequencies for 'X:137310368' f[A,G] = [0.3670248,0.6329752] vs [0.5696,0.4304], chisq 452.7696
## Mismatched frequencies for 'X:137451355' f[T,C] = [0.03559436,0.9644057] vs [0.3034,0.6966], chisq 968.5279
## Mismatched frequencies for 'X:137535892' f[T,C] = [0.03962391,0.9603761] vs [0.3016,0.6984], chisq 929.4712
## Mismatched frequencies for 'X:137651714' f[G,T] = [0.03962391,0.9603761] vs [0.2995,0.7005], chisq 918.5133
## Mismatched frequencies for 'X:137852982' f[G,T] = [0.016454,0.983546] vs [0.2871,0.7129], chisq 1027.435
## Mismatched frequencies for 'X:137857818' f[C,T] = [0.2028207,0.7971793] vs [0.424,0.576], chisq 553.5914
## Mismatched frequencies for 'X:137943387' f[A,G] = [0.3079248,0.6920752] vs [0.5014,0.4986], chisq 408.7986
## Mismatched frequencies for 'X:137984544' f[T,C] = [0.3411686,0.6588314] vs [0.5282,0.4718], chisq 381.9227
## Mismatched frequencies for 'X:137993973' f[A,G] = [0.3085964,0.6914036] vs [0.5042,0.4958], chisq 417.7237
## Mismatched frequencies for 'X:138017328' f[A,G] = [0.1584956,0.8415044] vs [0.3862,0.6138], chisq 608.7699
## Mismatched frequencies for 'X:138031265' f[C,G] = [0.2316991,0.7683009] vs [0.4461,0.5539], chisq 512.1605
## Mismatched frequencies for 'X:138056412' f[A,G] = [0.129953,0.870047] vs [0.3742,0.6258], chisq 711.8938
## Mismatched frequencies for 'X:138076183' f[A,G] = [0.1450638,0.8549362] vs [0.382,0.618], chisq 662.9789
## Mismatched frequencies for 'X:138143724' f[A,G] = [0.2813969,0.7186031] vs [0.5014,0.4986], chisq 528.7374
## Mismatched frequencies for 'X:138185609' f[T,C] = [0.2367361,0.7632639] vs [0.4609,0.5391], chisq 555.7461
## Mismatched frequencies for 'X:138276345' f[G,C] = [0.1762928,0.8237072] vs [0.3824,0.6176], chisq 499.9101
## Mismatched frequencies for 'X:138309758' f[A,G] = [0.2860981,0.7139019] vs [0.4812,0.5188], chisq 417.4024
## Mismatched frequencies for 'X:138340643' f[C,T] = [0.1259234,0.8740765] vs [0.3776,0.6224], chisq 753.2105
## Mismatched frequencies for 'X:138385782' f[G,A] = [0.1245803,0.8754197] vs [0.3925,0.6075], chisq 840.0135
## Mismatched frequencies for 'X:138400875' f[C,T] = [0.1091336,0.8908663] vs [0.3812,0.6188], chisq 878.138
## Mismatched frequencies for 'X:138508247' f[G,A] = [0.2958361,0.7041639] vs [0.495,0.505], chisq 433.6282
## Mismatched frequencies for 'X:138571159' f[G,A] = [0.2840833,0.7159167] vs [0.4937,0.5063], chisq 480.5311
## Mismatched frequencies for 'X:138589014' f[A,C] = [0.2844191,0.7155809] vs [0.4924,0.5076], chisq 473.1683
## Mismatched frequencies for 'X:138622254' f[T,C] = [0.07689725,0.9231027] vs [0.3374,0.6626], chisq 857.1482
## Mismatched frequencies for 'X:138631215' f[G,A] = [0.06145064,0.9385493] vs [0.3216,0.6784], chisq 879.5345
## Mismatched frequencies for 'X:138720703' f[T,C] = [0.3307589,0.6692411] vs [0.5202,0.4798], chisq 391.6117
## Mismatched frequencies for 'X:138769897' f[G,A] = [0.07085292,0.9291471] vs [0.3394,0.6606], chisq 908.8542
## Mismatched frequencies for 'X:138798494' f[C,T] = [0.0883143,0.9116857] vs [0.3589,0.6411], chisq 894.9739
## Mismatched frequencies for 'X:138897130' f[A,C] = [0.016454,0.983546] vs [0.2925,0.7075], chisq 1056.315
## Mismatched frequencies for 'X:139067894' f[C,T] = [0.207186,0.792814] vs [0.4489,0.5511], chisq 650.7706
## Mismatched frequencies for 'X:139102248' f[T,G] = [0.1138348,0.8861652] vs [0.36,0.64], chisq 737.3408
## Mismatched frequencies for 'X:139135019' f[C,T] = [0.2112156,0.7887844] vs [0.4431,0.5569], chisq 600.7214
## Mismatched frequencies for 'X:139140262' f[A,G] = [0.1185359,0.8814641] vs [0.3742,0.6258], chisq 780.9648
## Mismatched frequencies for 'X:139211667' f[A,G] = [0.03022163,0.9697784] vs [0.2943,0.7057], chisq 960.4307
## Mismatched frequencies for 'X:139230891' f[C,A] = [0.04533244,0.9546676] vs [0.3077,0.6923], chisq 920.2006
## Mismatched frequencies for 'X:139291285' f[T,C] = [0.02316991,0.9768301] vs [0.2926,0.7074], chisq 1004.746
## Mismatched frequencies for 'X:139589364' f[T,C] = [0.3052384,0.6947616] vs [0.477,0.523], chisq 323.7188
## Mismatched frequencies for 'X:139599663' f[G,A] = [0.04633983,0.9536602] vs [0.3208,0.6792], chisq 982.7357
## Mismatched frequencies for 'X:139606415' f[C,A] = [0.04633983,0.9536602] vs [0.3146,0.6854], chisq 949.4152
## Mismatched frequencies for 'X:139616262' f[A,G] = [0.2306918,0.7693083] vs [0.437,0.563], chisq 476.7229
## Mismatched frequencies for 'X:139620091' f[A,G] = [0.1232371,0.8767629] vs [0.3647,0.6353], chisq 704.3774
## Mismatched frequencies for 'X:139728231' f[G,A] = [0.3653459,0.6346541] vs [0.5323,0.4677], chisq 304.544
## Mismatched frequencies for 'X:139804618' f[T,C] = [0.3777703,0.6222297] vs [0.5456,0.4544], chisq 308.5603
## Mismatched frequencies for 'X:139834666' f[C,T] = [0.1074547,0.8925453] vs [0.367,0.633], chisq 812.9519
## Mismatched frequencies for 'X:139845866' f[C,T] = [0.1417058,0.8582941] vs [0.3734,0.6266], chisq 640.3913
## Mismatched frequencies for 'X:139849750' f[C,G] = [0.3267294,0.6732706] vs [0.5082,0.4918], chisq 359.3968
## Mismatched frequencies for 'X:139863318' f[C,T] = [0.1249161,0.8750839] vs [0.3579,0.6421], chisq 661.4352
## Mismatched frequencies for 'X:139926795' f[G,A] = [0.1729349,0.8270652] vs [0.4091,0.5909], chisq 639.957
## Mismatched frequencies for 'X:139936408' f[G,C] = [0.3492277,0.6507723] vs [0.5309,0.4691], chisq 360.4772
## Mismatched frequencies for 'X:139965758' f[C,T] = [0.1954332,0.8045668] vs [0.4194,0.5806], chisq 569.8499
## Mismatched frequencies for 'X:139982519' f[G,A] = [0.1205507,0.8794493] vs [0.3825,0.6175], chisq 811.9088
## Mismatched frequencies for 'X:139985284' f[C,A] = [0.4123573,0.5876427] vs [0.5924,0.4076], chisq 362.3478
## Mismatched frequencies for 'X:140008515' f[C,T] = [0.2505037,0.7494963] vs [0.4671,0.5329], chisq 517.2932
## Mismatched frequencies for 'X:140025074' f[A,C] = [0.2938214,0.7061787] vs [0.4805,0.5195], chisq 382.1379
## Mismatched frequencies for 'X:140040600' f[C,T] = [0.2276696,0.7723304] vs [0.4427,0.5573], chisq 516.245
## Mismatched frequencies for 'X:140042859' f[A,G] = [0.243452,0.7565481] vs [0.472,0.528], chisq 575.0661
## Mismatched frequencies for 'X:140063295' f[A,G] = [0.2646071,0.7353929] vs [0.4547,0.5453], chisq 400.2927
## Mismatched frequencies for 'X:140250546' f[G,A] = [0.3687038,0.6312962] vs [0.5578,0.4422], chisq 392.9192
## Mismatched frequencies for 'X:140274514' f[T,C] = [0.3680323,0.6319678] vs [0.5621,0.4379], chisq 414.4201
## Mismatched frequencies for 'X:140277047' f[A,G] = [0.3586299,0.6413701] vs [0.5586,0.4414], chisq 439.391
## Mismatched frequencies for 'X:140434569' f[G,A] = [0.2085292,0.7914708] vs [0.4329,0.5671], chisq 566.0234
## Mismatched frequencies for 'X:140439277' f[T,C] = [0.3072532,0.6927468] vs [0.5223,0.4777], chisq 504.6292
## Mismatched frequencies for 'X:140450241' f[G,A] = [0.3112827,0.6887172] vs [0.514,0.486], chisq 448.4073
## Mismatched frequencies for 'X:140481449' f[G,T] = [0.3300873,0.6699127] vs [0.521,0.479], chisq 397.7294
## Mismatched frequencies for 'X:140506893' f[A,G] = [0.3210208,0.6789792] vs [0.4913,0.5087], chisq 317.0433
## Mismatched frequencies for 'X:140856171' f[T,G] = [0.1333109,0.866689] vs [0.3815,0.6185], chisq 728.7124
## Mismatched frequencies for 'X:140869927' f[T,G] = [0.3351243,0.6648757] vs [0.5174,0.4826], chisq 362.5273
## Mismatched frequencies for 'X:140895244' f[G,A] = [0.3613163,0.6386837] vs [0.5345,0.4655], chisq 327.779
## Mismatched frequencies for 'X:140959547' f[T,C] = [0.3438549,0.656145] vs [0.5125,0.4875], chisq 310.3325
## Mismatched frequencies for 'X:140964016' f[A,G] = [0.3438549,0.656145] vs [0.5347,0.4653], chisq 397.9632
## Mismatched frequencies for 'X:140983064' f[G,A] = [0.0483546,0.9516454] vs [0.3244,0.6756], chisq 987.5538
## Mismatched frequencies for 'X:140983127' f[G,A] = [0.07118872,0.9288113] vs [0.3425,0.6575], chisq 923.2147
## Mismatched frequencies for 'X:141043089' f[G,A] = [0.2649429,0.7350571] vs [0.4687,0.5313], chisq 457.2906
## Mismatched frequencies for 'X:141076009' f[T,C] = [0.317327,0.6826729] vs [0.5107,0.4893], chisq 408.0562
## Mismatched frequencies for 'X:141081670' f[A,G] = [0.1037609,0.8962391] vs [0.3572,0.6428], chisq 785.4411
## Mismatched frequencies for 'X:141093353' f[T,G] = [0.3032236,0.6967763] vs [0.5128,0.4872], chisq 479.2917
## Mismatched frequencies for 'X:141104595' f[C,A] = [0.08361317,0.9163868] vs [0.3485,0.6515], chisq 870.7409
## Mismatched frequencies for 'X:141168707' f[A,C] = [0.07857622,0.9214238] vs [0.3339,0.6661], chisq 827.7759
## Mismatched frequencies for 'X:141181975' f[C,T] = [0.3458697,0.6541303] vs [0.5388,0.4612], chisq 406.9711
## Mismatched frequencies for 'X:141184587' f[T,C] = [0.3260578,0.6739423] vs [0.5367,0.4633], chisq 484.8351
## Mismatched frequencies for 'X:141188358' f[G,A] = [0.5107455,0.4892545] vs [0.6722,0.3278], chisq 316.266
## Mismatched frequencies for 'X:141188454' f[C,T] = [0.03559436,0.9644057] vs [0.3054,0.6946], chisq 979.1731
## Mismatched frequencies for 'X:141234260' f[A,C] = [0.3687038,0.6312962] vs [0.5564,0.4436], chisq 386.9577
## Mismatched frequencies for 'X:141263753' f[A,C] = [0.08193418,0.9180658] vs [0.331,0.669], chisq 790.9957
## Mismatched frequencies for 'X:141268600' f[G,A] = [0.2934855,0.7065144] vs [0.4902,0.5098], chisq 423.4024
## Mismatched frequencies for 'X:141269586' f[A,G] = [0.292814,0.707186] vs [0.4895,0.5105], chisq 423.3433
## Mismatched frequencies for 'X:141290865' f[C,T] = [0.2998657,0.7001343] vs [0.4985,0.5015], chisq 431.0809
## Mismatched frequencies for 'X:141315910' f[G,A] = [0.1789792,0.8210208] vs [0.4175,0.5825], chisq 648.0193
## Mismatched frequencies for 'X:141339722' f[T,C] = [0.05910007,0.9408999] vs [0.3169,0.6831], chisq 871.2898
## Mismatched frequencies for 'X:141351978' f[C,T] = [0.2545332,0.7454668] vs [0.447,0.553], chisq 412.0773
## Mismatched frequencies for 'X:141416984' f[G,T] = [0.05775688,0.9422431] vs [0.3274,0.6726], chisq 936.0769
## Mismatched frequencies for 'X:141467629' f[A,G] = [0.273002,0.726998] vs [0.4651,0.5349], chisq 406.8832
## Mismatched frequencies for 'X:141471309' f[C,T] = [0.4133647,0.5866353] vs [0.5806,0.4194], chisq 310.6663
## Mismatched frequencies for 'X:141497792' f[T,C] = [0.01208865,0.9879113] vs [0.2908,0.7092], chisq 1081.711
## Mismatched frequencies for 'X:141524626' f[T,C] = [0.1487576,0.8512424] vs [0.3832,0.6168], chisq 648.0114
## Mismatched frequencies for 'X:141572805' f[A,G] = [0.3875084,0.6124916] vs [0.5689,0.4311], chisq 363.1958
## Mismatched frequencies for 'X:141587390' f[A,C] = [0.3294157,0.6705843] vs [0.519,0.481], chisq 392.1898
## Mismatched frequencies for 'X:141727602' f[A,G] = [0.04298187,0.9570181] vs [0.3153,0.6847], chisq 977.6504
## Mismatched frequencies for 'X:141780570' f[A,C] = [0.4311619,0.5688381] vs [0.6066,0.3934], chisq 347.5646
## Mismatched frequencies for 'X:141790276' f[A,G] = [0.3065816,0.6934184] vs [0.5066,0.4934], chisq 436.7129
## Mismatched frequencies for 'X:141936058' f[G,A] = [0.370047,0.629953] vs [0.5547,0.4453], chisq 374.3379
## Mismatched frequencies for 'X:141941931' f[C,A] = [0.1779718,0.8220282] vs [0.4085,0.5915], chisq 609.8438
## Mismatched frequencies for 'X:141945401' f[A,G] = [0.3586299,0.6413701] vs [0.5477,0.4523], chisq 391.6361
## Mismatched frequencies for 'X:141955384' f[C,T] = [0.278039,0.721961] vs [0.4957,0.5043], chisq 517.9928
## Mismatched frequencies for 'X:142071488' f[T,G] = [0.3408328,0.6591672] vs [0.5358,0.4642], chisq 415.3882
## Mismatched frequencies for 'X:142072477' f[C,T] = [0.1359973,0.8640027] vs [0.4016,0.5984], chisq 817.3754
## Mismatched frequencies for 'X:142100851' f[G,A] = [0.1638684,0.8361316] vs [0.3954,0.6046], chisq 623.2853
## Mismatched frequencies for 'X:142126677' f[T,C] = [0.4234386,0.5765615] vs [0.6006,0.3994], chisq 352.8326
## Mismatched frequencies for 'X:142128914' f[G,A] = [0.1138348,0.8861652] vs [0.3615,0.6385], chisq 744.8933
## Mismatched frequencies for 'X:142168190' f[T,C] = [0.06850235,0.9314976] vs [0.3201,0.6799], chisq 823.8913
## Mismatched frequencies for 'X:142419633' f[T,C] = [0.2364003,0.7635998] vs [0.4704,0.5296], chisq 603.3114
## Mismatched frequencies for 'X:142658625' f[C,A] = [0.4946273,0.5053728] vs [0.6567,0.3433], chisq 312.1774
## Mismatched frequencies for 'X:142660887' f[A,G] = [0.2021491,0.7978509] vs [0.4285,0.5715], chisq 577.9777
## Mismatched frequencies for 'X:142680258' f[G,A] = [0.230356,0.7696441] vs [0.4507,0.5493], chisq 539.6851
## Mismatched frequencies for 'X:142701244' f[A,G] = [0.4647414,0.5352586] vs [0.6319,0.3681], chisq 322.8187
## Mismatched frequencies for 'X:142711939' f[C,T] = [0.3401612,0.6598388] vs [0.5219,0.4781], chisq 360.4517
## Mismatched frequencies for 'X:142720238' f[C,T] = [0.4294829,0.5705171] vs [0.6065,0.3935], chisq 353.7866
## Mismatched frequencies for 'X:142722609' f[G,C] = [0.3247146,0.6752854] vs [0.5095,0.4905], chisq 372.6265
## Mismatched frequencies for 'X:142731283' f[T,C] = [0.2310275,0.7689725] vs [0.4482,0.5518], chisq 524.9193
## Mismatched frequencies for 'X:142749741' f[A,C] = [0.351914,0.648086] vs [0.5315,0.4685], chisq 352.2802
## Mismatched frequencies for 'X:142756404' f[T,C] = [0.3525856,0.6474144] vs [0.5197,0.4803], chisq 304.7603
## Mismatched frequencies for 'X:142954139' f[A,G] = [0.2659503,0.7340497] vs [0.4761,0.5239], chisq 485.2249
## Mismatched frequencies for 'X:142961967' f[A,G] = [0.1833445,0.8166555] vs [0.4411,0.5589], chisq 744.239
## Mismatched frequencies for 'X:142967468' f[T,G] = [0.3129617,0.6870383] vs [0.517,0.483], chisq 454.2537
## Mismatched frequencies for 'X:142977967' f[A,G] = [0.174278,0.825722] vs [0.4229,0.5771], chisq 701.3945
## Mismatched frequencies for 'X:143031385' f[C,T] = [0.304231,0.695769] vs [0.5071,0.4929], chisq 449.2398
## Mismatched frequencies for 'X:143071335' f[G,A] = [0.09267965,0.9073203] vs [0.3677,0.6323], chisq 913.5364
## Mismatched frequencies for 'X:143237327' f[C,T] = [0.1195433,0.8804567] vs [0.3766,0.6234], chisq 787.1954
## Mismatched frequencies for 'X:143246090' f[G,A] = [0.4492948,0.5507052] vs [0.6199,0.3801], chisq 332.4025
## Mismatched frequencies for 'X:143355780' f[T,C] = [0.3290799,0.6709201] vs [0.5096,0.4904], chisq 355.6151
## Mismatched frequencies for 'X:143631443' f[G,T] = [0.03760913,0.9623908] vs [0.3026,0.6974], chisq 949.4379
## Mismatched frequencies for 'X:143679310' f[A,G] = [0.2424446,0.7575554] vs [0.4698,0.5302], chisq 569.5458
## Mismatched frequencies for 'X:143696815' f[T,C] = [0.2296844,0.7703157] vs [0.4563,0.5437], chisq 569.3078
## Mismatched frequencies for 'X:143701514' f[C,T] = [0.2340497,0.7659503] vs [0.4523,0.5477], chisq 528.9652
## Mismatched frequencies for 'X:143705415' f[G,T] = [0.238415,0.7615849] vs [0.4702,0.5298], chisq 591.9483
## Mismatched frequencies for 'X:143710049' f[A,G] = [0.1914036,0.8085964] vs [0.4285,0.5715], chisq 634.5874
## Mismatched frequencies for 'X:143716550' f[A,G] = [0.1527871,0.8472129] vs [0.398,0.602], chisq 698.0572
## Mismatched frequencies for 'X:143720598' f[G,A] = [0.07857622,0.9214238] vs [0.3517,0.6483], chisq 922.1063
## Mismatched frequencies for 'X:143749402' f[G,A] = [0.4093351,0.5906649] vs [0.5811,0.4189], chisq 327.7441
## Mismatched frequencies for 'X:143777979' f[A,G] = [0.3727334,0.6272667] vs [0.5435,0.4565], chisq 319.2716
## Mismatched frequencies for 'X:143944567' f[T,C] = [0.3549362,0.6450638] vs [0.5561,0.4439], chisq 444.2758
## Mismatched frequencies for 'X:143949304' f[A,C] = [0.3233714,0.6766286] vs [0.4944,0.5056], chisq 319.6731
## Mismatched frequencies for 'X:144010480' f[G,A] = [0.03794493,0.9620551] vs [0.306,0.694], chisq 964.966
## Mismatched frequencies for 'X:144111022' f[T,C] = [0.1437206,0.8562794] vs [0.4014,0.5986], chisq 768.9695
## Mismatched frequencies for 'X:144174392' f[G,C] = [0.1027535,0.8972465] vs [0.3521,0.6479], chisq 765.7143
## Mismatched frequencies for 'X:144228315' f[G,A] = [0.3327737,0.6672263] vs [0.5299,0.4701], chisq 424.3007
## Mismatched frequencies for 'X:144249304' f[T,G] = [0.2333781,0.7666219] vs [0.4473,0.5527], chisq 509.5067
## Mismatched frequencies for 'X:144253624' f[A,G] = [0.3488919,0.6511081] vs [0.5236,0.4764], chisq 333.15
## Mismatched frequencies for 'X:144269520' f[A,G] = [0.307589,0.692411] vs [0.5161,0.4839], chisq 474.3913
## Mismatched frequencies for 'X:144273872' f[A,G] = [0.3888516,0.6111484] vs [0.5839,0.4161], chisq 422.816
## Mismatched frequencies for 'X:144280461' f[T,C] = [0.3169913,0.6830087] vs [0.4995,0.5005], chisq 363.8129
## Mismatched frequencies for 'X:144281044' f[T,C] = [0.2686367,0.7313634] vs [0.4906,0.5094], chisq 539.2701
## Mismatched frequencies for 'X:144344132' f[G,A] = [0.07756884,0.9224312] vs [0.336,0.664], chisq 845.3464
## Mismatched frequencies for 'X:144353437' f[G,T] = [0.1007388,0.8992612] vs [0.3542,0.6458], chisq 789.0951
## Mismatched frequencies for 'X:144359865' f[T,C] = [0.08999328,0.9100067] vs [0.3582,0.6418], chisq 879.9532
## Mismatched frequencies for 'X:144408323' f[G,A] = [0.0886501,0.9113499] vs [0.3446,0.6554], chisq 817.0817
## Mismatched frequencies for 'X:144431697' f[C,T] = [0.09267965,0.9073203] vs [0.3546,0.6454], chisq 843.0396
## Mismatched frequencies for 'X:144479949' f[C,A] = [0.1813298,0.8186703] vs [0.4149,0.5851], chisq 622.5755
## Mismatched frequencies for 'X:144502614' f[A,G] = [0.3052384,0.6947616] vs [0.4978,0.5022], chisq 405.1367
## Mismatched frequencies for 'X:144521754' f[G,A] = [0.2588986,0.7411014] vs [0.464,0.536], chisq 464.2617
## Mismatched frequencies for 'X:144557401' f[C,A] = [0.3200134,0.6799866] vs [0.529,0.471], chisq 476.8037
## Mismatched frequencies for 'X:144663871' f[A,C] = [0.2790463,0.7209536] vs [0.4894,0.5106], chisq 484.3577
## Mismatched frequencies for 'X:144665470' f[T,C] = [0.1981195,0.8018805] vs [0.4421,0.5579], chisq 665.8793
## Mismatched frequencies for 'X:144673801' f[C,T] = [0.2562122,0.7437878] vs [0.4787,0.5213], chisq 543.594
## Mismatched frequencies for 'X:144676210' f[A,C] = [0.3022163,0.6977838] vs [0.5181,0.4819], chisq 508.5283
## Mismatched frequencies for 'X:144739915' f[C,T] = [0.261585,0.7384151] vs [0.483,0.517], chisq 537.6465
## Mismatched frequencies for 'X:144745505' f[G,A] = [0.2404298,0.7595702] vs [0.4679,0.5321], chisq 570.5633
## Mismatched frequencies for 'X:144822545' f[C,T] = [0.3562794,0.6437206] vs [0.5303,0.4697], chisq 330.7532
## Mismatched frequencies for 'X:144883233' f[T,C] = [0.0567495,0.9432505] vs [0.3173,0.6827], chisq 889.6856
## Mismatched frequencies for 'X:144904882' f[T,C] = [0.1296172,0.8703828] vs [0.3747,0.6253], chisq 716.3808
## Mismatched frequencies for 'X:144928559' f[T,C] = [0.129953,0.870047] vs [0.388,0.612], chisq 782.4951
## Mismatched frequencies for 'X:144946082' f[A,C] = [0.09200806,0.9079919] vs [0.3569,0.6431], chisq 859.6349
## Mismatched frequencies for 'X:144961624' f[G,A] = [0.4425789,0.5574211] vs [0.635,0.365], chisq 428.186
## Mismatched frequencies for 'X:145045099' f[C,A] = [0.5238415,0.4761585] vs [0.6803,0.3197], chisq 300.7082
## Mismatched frequencies for 'X:145328713' f[A,G] = [0.4079919,0.5920081] vs [0.5739,0.4261], chisq 304.7204
## Mismatched frequencies for 'X:145347110' f[G,A] = [0.4073203,0.5926797] vs [0.5744,0.4256], chisq 309.0999
## Mismatched frequencies for 'X:145435246' f[T,C] = [0.1124916,0.8875084] vs [0.3584,0.6416], chisq 737.4799
## Mismatched frequencies for 'X:145616611' f[C,T] = [0.04298187,0.9570181] vs [0.31,0.69], chisq 949.3209
## Mismatched frequencies for 'X:145626349' f[T,C] = [0.06346542,0.9365346] vs [0.3377,0.6623], chisq 951.2858
## Mismatched frequencies for 'X:145748908' f[T,G] = [0.1675621,0.8324379] vs [0.3993,0.6007], chisq 621.8827
## Mismatched frequencies for 'X:145794165' f[A,G] = [0.6534587,0.3465413] vs [0.9625,0.0375], chisq 4383.336
## Mismatched frequencies for 'X:145938842' f[G,A] = [0.3149765,0.6850235] vs [0.5115,0.4885], chisq 421.4517
## Mismatched frequencies for 'X:145949960' f[C,T] = [0.3868368,0.6131632] vs [0.5635,0.4365], chisq 343.7953
## Mismatched frequencies for 'X:145980447' f[G,A] = [0.4345198,0.5654802] vs [0.6024,0.3976], chisq 317.4193
## Mismatched frequencies for 'X:145992130' f[G,A] = [0.4284755,0.5715245] vs [0.5988,0.4012], chisq 325.8452
## Mismatched frequencies for 'X:146002069' f[G,A] = [0.3498993,0.6501008] vs [0.5401,0.4599], chisq 395.6503
## Mismatched frequencies for 'X:146045852' f[A,C] = [0.03660174,0.9633983] vs [0.3021,0.6979], chisq 954.206
## Mismatched frequencies for 'X:146050238' f[T,C] = [0.3072532,0.6927468] vs [0.5104,0.4896], chisq 450.3731
## Mismatched frequencies for 'X:146068624' f[A,G] = [0.3324379,0.6675621] vs [0.5325,0.4675], chisq 437.1526
## Mismatched frequencies for 'X:146103408' f[C,T] = [0.2051713,0.7948288] vs [0.4424,0.5576], chisq 629.1863
## Mismatched frequencies for 'X:146120221' f[G,A] = [0.337139,0.662861] vs [0.5312,0.4688], chisq 411.2797
## Mismatched frequencies for 'X:146150809' f[A,T] = [0.4086635,0.5913365] vs [0.5746,0.4254], chisq 304.9289
## Mismatched frequencies for 'X:146156559' f[C,T] = [0.1450638,0.8549362] vs [0.3799,0.6201], chisq 652.7884
## Mismatched frequencies for 'X:146160419' f[A,C] = [0.1484218,0.8515782] vs [0.3813,0.6187], chisq 640.7388
## Mismatched frequencies for 'X:146509636' f[T,C] = [0.01477502,0.985225] vs [0.2881,0.7119], chisq 1045.915
## Mismatched frequencies for 'X:146550068' f[T,C] = [0.1608462,0.8391538] vs [0.3976,0.6024], chisq 650.5156
## Mismatched frequencies for 'X:146553851' f[C,T] = [0.1269308,0.8730692] vs [0.3649,0.6351], chisq 683.677
## Mismatched frequencies for 'X:146579242' f[C,T] = [0.03089322,0.9691068] vs [0.298,0.702], chisq 974.9137
## Mismatched frequencies for 'X:146606664' f[C,T] = [0.1853593,0.8146407] vs [0.4014,0.5986], chisq 538.6356
## Mismatched frequencies for 'X:146609390' f[T,C] = [0.3368032,0.6631968] vs [0.5275,0.4725], chisq 397.0004
## Mismatched frequencies for 'X:146667550' f[A,G] = [0.01914036,0.9808596] vs [0.2916,0.7084], chisq 1030.494
## Mismatched frequencies for 'X:146680236' f[T,C] = [0.1652116,0.8347884] vs [0.4024,0.5976], chisq 649.7486
## Mismatched frequencies for 'X:146684334' f[T,C] = [0.113499,0.886501] vs [0.3699,0.6301], chisq 789.985
## Mismatched frequencies for 'X:146686700' f[G,A] = [0.2535258,0.7464741] vs [0.4648,0.5352], chisq 492.5676
## Mismatched frequencies for 'X:146770081' f[A,G] = [0.2360645,0.7639355] vs [0.4296,0.5704], chisq 421.3494
## Mismatched frequencies for 'X:146940845' f[C,T] = [0.05574211,0.9442579] vs [0.3481,0.6519], chisq 1065.309
## Mismatched frequencies for 'X:146975441' f[C,G] = [0.3425117,0.6574882] vs [0.5427,0.4573], chisq 438.4475
## Mismatched frequencies for 'X:147083907' f[A,G] = [0.01410342,0.9858966] vs [0.2891,0.7109], chisq 1056.561
## Mismatched frequencies for 'X:147127369' f[T,C] = [0.03055742,0.9694426] vs [0.2996,0.7004], chisq 985.9196
## Mismatched frequencies for 'X:147231235' f[G,A] = [0.2632639,0.7367361] vs [0.4762,0.5238], chisq 498.1995
## Mismatched frequencies for 'X:147381021' f[T,C] = [0.3693754,0.6306246] vs [0.554,0.446], chisq 374.1412
## Mismatched frequencies for 'X:147397682' f[C,A] = [0.3428476,0.6571525] vs [0.5393,0.4607], chisq 421.9818
## Mismatched frequencies for 'X:147440140' f[A,C] = [0.2622566,0.7377434] vs [0.4722,0.5278], chisq 484.9324
## Mismatched frequencies for 'X:147496056' f[T,G] = [0.0157824,0.9842176] vs [0.2902,0.7098], chisq 1049.235
## Mismatched frequencies for 'X:147575583' f[T,C] = [0.07051712,0.9294829] vs [0.3274,0.6726], chisq 847.9072
## Mismatched frequencies for 'X:147601858' f[A,C] = [0.2424446,0.7575554] vs [0.4404,0.5596], chisq 437.7478
## Mismatched frequencies for 'X:147615719' f[G,A] = [0.3132975,0.6867025] vs [0.4966,0.5034], chisq 367.1353
## Mismatched frequencies for 'X:147789920' f[G,A] = [0.2595702,0.7404298] vs [0.4543,0.5457], chisq 420.2258
## Mismatched frequencies for 'X:147836584' f[C,T] = [0.2807253,0.7192747] vs [0.4741,0.5259], chisq 410.9331
## Mismatched frequencies for 'X:147837936' f[T,C] = [0.1141706,0.8858294] vs [0.3616,0.6384], chisq 743.3491
## Mismatched frequencies for 'X:147869977' f[G,A] = [0.304231,0.695769] vs [0.4907,0.5093], chisq 380.3404
## Mismatched frequencies for 'X:147897430' f[G,A] = [0.1067831,0.8932169] vs [0.3682,0.6318], chisq 823.5464
## Mismatched frequencies for 'X:147928033' f[A,G] = [0.09133647,0.9086635] vs [0.3586,0.6414], chisq 873.1593
## Mismatched frequencies for 'X:147938227' f[T,G] = [0.05104097,0.9489591] vs [0.325,0.675], chisq 971.2626
## Mismatched frequencies for 'X:147980413' f[C,T] = [0.05137676,0.9486232] vs [0.3252,0.6748], chisq 969.9151
## Mismatched frequencies for 'X:148045160' f[G,A] = [0.05540631,0.9445937] vs [0.3339,0.6661], chisq 988.2054
## Mismatched frequencies for 'X:148109335' f[C,A] = [0.0003357958,0.9996642] vs [0.281,0.719], chisq 1124.093
## Mismatched frequencies for 'X:148113539' f[G,A] = [0.1138348,0.8861652] vs [0.3731,0.6269], chisq 804.583
## Mismatched frequencies for 'X:148136171' f[C,T] = [0.1880457,0.8119543] vs [0.4156,0.5844], chisq 590.2981
## Mismatched frequencies for 'X:148151708' f[C,A] = [0.003022162,0.9969779] vs [0.2897,0.7103], chisq 1149.28
## Mismatched frequencies for 'X:148184983' f[C,T] = [0.05742109,0.9425789] vs [0.3288,0.6712], chisq 945.9878
## Mismatched frequencies for 'X:148204830' f[C,T] = [0.1128274,0.8871726] vs [0.3719,0.6281], chisq 804.636
## Mismatched frequencies for 'X:148268967' f[G,A] = [0.06850235,0.9314976] vs [0.3325,0.6675], chisq 888.2941
## Mismatched frequencies for 'X:148304293' f[G,A] = [0.3102754,0.6897246] vs [0.4892,0.5108], chisq 350.2485
## Mismatched frequencies for 'X:148467084' f[T,C] = [0.06883815,0.9311619] vs [0.3388,0.6612], chisq 919.5766
## Mismatched frequencies for 'X:148512811' f[A,G] = [0.06850235,0.9314976] vs [0.3381,0.6619], chisq 918.1445
## Mismatched frequencies for 'X:148541046' f[G,A] = [0.01376763,0.9862324] vs [0.3062,0.6938], chisq 1153.019
## Mismatched frequencies for 'X:148544800' f[C,T] = [0.007051712,0.9929483] vs [0.2984,0.7016], chisq 1164.202
## Mismatched frequencies for 'X:148554460' f[G,C] = [0.03593015,0.9640698] vs [0.3153,0.6847], chisq 1030.165
## Mismatched frequencies for 'X:148567451' f[C,T] = [0.4680994,0.5319006] vs [0.6427,0.3573], chisq 355.9747
## Mismatched frequencies for 'X:148594062' f[C,T] = [0.1830087,0.8169913] vs [0.41,0.59], chisq 590.2925
## Mismatched frequencies for 'X:148597302' f[A,C] = [0.644728,0.355272] vs [0.916,0.084], chisq 2104.467
## Mismatched frequencies for 'X:148653041' f[G,A] = [0.07723304,0.922767] vs [0.3449,0.6551], chisq 894.5962
## Mismatched frequencies for 'X:148716816' f[A,G] = [0.1638684,0.8361316] vs [0.3881,0.6119], chisq 588.8781
## Mismatched frequencies for 'X:148721723' f[C,T] = [0.5137676,0.4862324] vs [0.6751,0.3249], chisq 317.1019
## Mismatched frequencies for 'X:148736128' f[T,G] = [0.0963734,0.9036266] vs [0.356,0.644], chisq 826.3627
## Mismatched frequencies for 'X:148763380' f[A,C] = [0.04398926,0.9560108] vs [0.3115,0.6885], chisq 949.9633
## Mismatched frequencies for 'X:148893118' f[C,T] = [0.05238415,0.9476159] vs [0.3173,0.6827], chisq 920.4117
## Mismatched frequencies for 'X:148958591' f[G,A] = [0.03525856,0.9647414] vs [0.3013,0.6987], chisq 959.8918
## Mismatched frequencies for 'X:149372428' f[C,A] = [0.2659503,0.7340497] vs [0.4577,0.5423], chisq 406.7355
## Mismatched frequencies for 'X:149387892' f[T,C] = [0.01813297,0.981867] vs [0.2919,0.7081], chisq 1039.942
## Mismatched frequencies for 'X:149426088' f[T,G] = [0.05137676,0.9486232] vs [0.3092,0.6908], chisq 885.1165
## Mismatched frequencies for 'X:149429373' f[A,G] = [0.1937542,0.8062458] vs [0.4257,0.5743], chisq 608.4199
## Mismatched frequencies for 'X:149467016' f[A,G] = [0.2081934,0.7918066] vs [0.4418,0.5582], chisq 610.2344
## Mismatched frequencies for 'X:149481253' f[C,T] = [0.3290799,0.6709201] vs [0.5228,0.4772], chisq 409.542
## Mismatched frequencies for 'X:149616197' f[G,A] = [0.3458697,0.6541303] vs [0.5307,0.4693], chisq 373.0968
## Mismatched frequencies for 'X:149646761' f[A,G] = [0.3398254,0.6601746] vs [0.5265,0.4735], chisq 380.4075
## Mismatched frequencies for 'X:149659739' f[T,C] = [0.2585628,0.7414372] vs [0.4628,0.5372], chisq 460.5838
## Mismatched frequencies for 'X:149669653' f[C,T] = [0.4274681,0.5725319] vs [0.5927,0.4073], chisq 305.4861
## Mismatched frequencies for 'X:149675732' f[G,T] = [0.0319006,0.9680994] vs [0.3089,0.6911], chisq 1025.762
## Mismatched frequencies for 'X:149675805' f[C,A] = [0.3955675,0.6044325] vs [0.5727,0.4273], chisq 346.9912
## Mismatched frequencies for 'X:149758345' f[T,C] = [0.485225,0.514775] vs [0.6596,0.3404], chisq 362.2168
## Mismatched frequencies for 'X:149913287' f[A,G] = [0.432505,0.567495] vs [0.6315,0.3685], chisq 456.1124
## Mismatched frequencies for 'X:149953602' f[A,G] = [0.006044325,0.9939557] vs [0.2854,0.7146], chisq 1101.149
## Mismatched frequencies for 'X:149960390' f[G,A] = [0.06682337,0.9331766] vs [0.3378,0.6622], chisq 928.2216
## Mismatched frequencies for 'X:149960481' f[A,G] = [0.2622566,0.7377434] vs [0.4894,0.5106], chisq 564.9487
## Mismatched frequencies for 'X:150017550' f[C,T] = [0.4100067,0.5899933] vs [0.5977,0.4023], chisq 394.9967
## Mismatched frequencies for 'X:150119309' f[C,T] = [0.1319678,0.8680322] vs [0.3861,0.6139], chisq 760.3169
## Mismatched frequencies for 'X:150127141' f[T,C] = [0.2891202,0.7108798] vs [0.4931,0.5069], chisq 455.0449
## Mismatched frequencies for 'X:150184756' f[G,A] = [0.2609134,0.7390866] vs [0.4784,0.5216], chisq 519.4106
## Mismatched frequencies for 'X:150194295' f[C,T] = [0.273002,0.726998] vs [0.4928,0.5072], chisq 528.5285
## Mismatched frequencies for 'X:150217321' f[A,C] = [0.2790463,0.7209536] vs [0.4898,0.5102], chisq 486.1612
## Mismatched frequencies for 'X:150249853' f[A,G] = [0.06245803,0.937542] vs [0.3331,0.6669], chisq 933.5013
## Mismatched frequencies for 'X:150264984' f[G,A] = [0.3626595,0.6373405] vs [0.5453,0.4547], chisq 365.2844
## Mismatched frequencies for 'X:150314831' f[G,A] = [0.2991941,0.7008059] vs [0.4916,0.5084], chisq 404.9127
## Mismatched frequencies for 'X:150321772' f[C,T] = [0.05977166,0.9402283] vs [0.3339,0.6661], chisq 956.8477
## Mismatched frequencies for 'X:150322542' f[T,C] = [0.5261921,0.4738079] vs [0.6889,0.3111], chisq 329.3105
## Mismatched frequencies for 'X:150337243' f[A,G] = [0.4432505,0.5567495] vs [0.6069,0.3931], chisq 302.7236
## Mismatched frequencies for 'X:150342890' f[A,G] = [0.1964406,0.8035594] vs [0.4346,0.5654], chisq 637.4868
## Mismatched frequencies for 'X:150349871' f[A,G] = [0.4190732,0.5809268] vs [0.588,0.412], chisq 318.3029
## Mismatched frequencies for 'X:150350172' f[A,C] = [0.09267965,0.9073203] vs [0.3482,0.6518], chisq 809.628
## Mismatched frequencies for 'X:150420568' f[C,T] = [0.2860981,0.7139019] vs [0.482,0.518], chisq 420.7462
## Mismatched frequencies for 'X:150457945' f[G,A] = [0.416051,0.583949] vs [0.5836,0.4164], chisq 312.3474
## Mismatched frequencies for 'X:150591567' f[C,T] = [0.4764943,0.5235057] vs [0.6423,0.3577], chisq 321.1355
## Mismatched frequencies for 'X:150791868' f[T,G] = [0.3364674,0.6635326] vs [0.5156,0.4844], chisq 350.1264
## Mismatched frequencies for 'X:150840695' f[A,T] = [0.9862324,0.01376763] vs [0.9998,2e-04], chisq 375.2826
## Mismatched frequencies for 'X:150860348' f[G,T] = [0.4492948,0.5507052] vs [0.6119,0.3881], chisq 300.0831
## Mismatched frequencies for 'X:150869267' f[A,G] = [0.06145064,0.9385493] vs [0.3223,0.6777], chisq 883.1952
## Mismatched frequencies for 'X:150876755' f[G,A] = [0.06312962,0.9368704] vs [0.3255,0.6745], chisq 888.3802
## Mismatched frequencies for 'X:150879645' f[G,A] = [0.3337811,0.6662189] vs [0.5221,0.4779], chisq 387.0185
## Mismatched frequencies for 'X:150904076' f[G,A] = [0.4617193,0.5382807] vs [0.6295,0.3705], chisq 324.4402
## Mismatched frequencies for 'X:150935423' f[A,G] = [0.2323707,0.7676293] vs [0.4566,0.5434], chisq 557.2391
## Mismatched frequencies for 'X:150961088' f[A,G] = [0.2216252,0.7783747] vs [0.4313,0.5687], chisq 494.4321
## Mismatched frequencies for 'X:150967357' f[A,C] = [0.05708529,0.9429147] vs [0.3146,0.6854], chisq 873.2965
## Mismatched frequencies for 'X:150985627' f[C,T] = [0.1672263,0.8327737] vs [0.3912,0.6088], chisq 585.4964
## Mismatched frequencies for 'X:151042244' f[C,G] = [0.4150436,0.5849564] vs [0.5845,0.4155], chisq 319.6342
## Mismatched frequencies for 'X:151132262' f[G,A] = [0.3374748,0.6625252] vs [0.5237,0.4763], chisq 378.499
## Mismatched frequencies for 'X:151138179' f[A,C] = [0.3069174,0.6930826] vs [0.4941,0.5059], chisq 383.0181
## Mismatched frequencies for 'X:151141840' f[C,A] = [0.4711216,0.5288784] vs [0.6467,0.3533], chisq 361.5496
## Mismatched frequencies for 'X:151149314' f[C,A] = [0.3250504,0.6749496] vs [0.5307,0.4693], chisq 461.7896
## Mismatched frequencies for 'X:151278099' f[C,T] = [0.2044997,0.7955003] vs [0.4271,0.5729], chisq 559.4396
## Mismatched frequencies for 'X:151594821' f[C,T] = [0.3633311,0.6366689] vs [0.5591,0.4409], chisq 421.245
## Mismatched frequencies for 'X:151655562' f[T,C] = [0.2075218,0.7924781] vs [0.4418,0.5582], chisq 613.7702
## Mismatched frequencies for 'X:151821277' f[T,A] = [0.4153794,0.5846205] vs [0.596,0.404], chisq 365.5182
## Mismatched frequencies for 'X:151829312' f[T,G] = [0.4133647,0.5866353] vs [0.5868,0.4132], chisq 335.2041
## Mismatched frequencies for 'X:151903562' f[T,C] = [0.4130289,0.5869711] vs [0.5831,0.4169], chisq 321.6925
## Mismatched frequencies for 'X:151909156' f[A,G] = [0.4130289,0.5869711] vs [0.5831,0.4169], chisq 321.6925
## Mismatched frequencies for 'X:151982996' f[G,A] = [0.195769,0.804231] vs [0.4202,0.5798], chisq 571.8556
## Mismatched frequencies for 'X:152002451' f[C,T] = [0.1987911,0.8012088] vs [0.4285,0.5715], chisq 595.3796
## Mismatched frequencies for 'X:152071253' f[G,C] = [0.2061786,0.7938213] vs [0.4264,0.5736], chisq 547.7541
## Mismatched frequencies for 'X:152072131' f[C,T] = [0.2625923,0.7374077] vs [0.4616,0.5384], chisq 437.4464
## Mismatched frequencies for 'X:152088252' f[T,C] = [0.2051713,0.7948288] vs [0.4156,0.5844], chisq 504.1674
## Mismatched frequencies for 'X:152202514' f[G,A] = [0.1527871,0.8472129] vs [0.3788,0.6212], chisq 604.9202
## Mismatched frequencies for 'X:152226542' f[T,C] = [0.1269308,0.8730692] vs [0.3766,0.6234], chisq 742.0174
## Mismatched frequencies for 'X:152667180' f[A,G] = [0.2884486,0.7115514] vs [0.4906,0.5094], chisq 447.1358
## Mismatched frequencies for 'X:152679578' f[A,G] = [0.351914,0.648086] vs [0.5478,0.4522], chisq 420.3315
## Mismatched frequencies for 'X:152699719' f[G,A] = [0.3347884,0.6652116] vs [0.5262,0.4738], chisq 399.935
## Mismatched frequencies for 'X:152703776' f[C,T] = [0.3129617,0.6870383] vs [0.5262,0.4738], chisq 496.2778
## Mismatched frequencies for 'X:152729257' f[C,T] = [0.3119543,0.6880457] vs [0.5157,0.4843], chisq 452.9555
## Mismatched frequencies for 'X:152747650' f[G,A] = [0.3764271,0.6235729] vs [0.549,0.451], chisq 326.5075
## Mismatched frequencies for 'X:152769754' f[A,G] = [0.3959033,0.6040967] vs [0.5692,0.4308], chisq 331.6453
## Mismatched frequencies for 'X:152794075' f[G,T] = [0.2313633,0.7686366] vs [0.4522,0.5478], chisq 541.669
## Mismatched frequencies for 'X:152797316' f[C,G] = [0.0483546,0.9516454] vs [0.3101,0.6899], chisq 911.1746
## Mismatched frequencies for 'X:152807665' f[A,G] = [0.001007387,0.9989926] vs [0.2823,0.7177], chisq 1125.579
## Mismatched frequencies for 'X:152829398' f[C,T] = [0.4190732,0.5809268] vs [0.6059,0.3941], chisq 393.6623
## Mismatched frequencies for 'X:152834736' f[T,C] = [0.5298858,0.4701142] vs [0.6882,0.3118], chisq 311.6007
## Mismatched frequencies for 'X:152842010' f[G,A] = [0.3072532,0.6927468] vs [0.519,0.481], chisq 489.2282
## Mismatched frequencies for 'X:152862638' f[A,G] = [0.05406313,0.9459369] vs [0.3228,0.6772], chisq 937.7041
## Mismatched frequencies for 'X:152869515' f[G,A] = [0.1729349,0.8270652] vs [0.419,0.581], chisq 689.1518
## Mismatched frequencies for 'X:152903393' f[A,G] = [0.1306246,0.8693754] vs [0.3782,0.6218], chisq 728.0051
## Mismatched frequencies for 'X:152917616' f[T,C] = [0.4110141,0.5889859] vs [0.6078,0.3922], chisq 437.0994
## Mismatched frequencies for 'X:152935655' f[C,T] = [0.1551377,0.8448623] vs [0.3805,0.6195], chisq 600.1692
## Mismatched frequencies for 'X:152993516' f[G,A] = [0.5564137,0.4435863] vs [0.7129,0.2871], chisq 317.9399
## Mismatched frequencies for 'X:153035798' f[G,A] = [0.3351243,0.6648757] vs [0.5504,0.4496], chisq 507.789
## Mismatched frequencies for 'X:153037808' f[G,A] = [0.3213566,0.6786434] vs [0.5377,0.4623], chisq 511.476
## Mismatched frequencies for 'X:153041544' f[T,C] = [0.1947616,0.8052384] vs [0.4292,0.5708], chisq 620.0082
## Mismatched frequencies for 'X:153047809' f[A,G] = [0.1581598,0.8418402] vs [0.4077,0.5923], chisq 716.1996
## Mismatched frequencies for 'X:153062772' f[T,C] = [0.05708529,0.9429147] vs [0.3066,0.6934], chisq 832.2868
## Mismatched frequencies for 'X:153123411' f[A,G] = [0.2676293,0.7323707] vs [0.5001,0.4999], chisq 590.5655
## Mismatched frequencies for 'X:153278829' f[G,A] = [0.1333109,0.866689] vs [0.4097,0.5903], chisq 878.822
## Mismatched frequencies for 'X:153284192' f[A,G] = [0.1249161,0.8750839] vs [0.3976,0.6024], chisq 865.6974
## Mismatched frequencies for 'X:153311980' f[T,A] = [0.1820013,0.8179987] vs [0.443,0.557], chisq 762.273
## Mismatched frequencies for 'X:153379544' f[C,T] = [0.2394224,0.7605776] vs [0.457,0.543], chisq 524.4164
## Mismatched frequencies for 'X:153546223' f[G,A] = [0.1719275,0.8280726] vs [0.3961,0.6039], chisq 583.4843
## Mismatched frequencies for 'X:153650639' f[C,T] = [0.113499,0.886501] vs [0.355,0.645], chisq 714.4513
## Mismatched frequencies for 'X:153657083' f[A,G] = [0.113499,0.886501] vs [0.3528,0.6472], chisq 703.6114
## Mismatched frequencies for 'X:153659164' f[T,G] = [0.03727334,0.9627267] vs [0.3031,0.6969], chisq 954.5438
## Mismatched frequencies for 'X:153660041' f[C,T] = [0.1205507,0.8794493] vs [0.3692,0.6308], chisq 742.9886
## Mismatched frequencies for 'X:153711305' f[C,A] = [0.5083949,0.4916051] vs [0.669,0.331], chisq 311.585
## Mismatched frequencies for 'X:153935398' f[C,T] = [0.3640027,0.6359973] vs [0.5626,0.4374], chisq 434.0102
## Mismatched frequencies for 'X:153945602' f[G,A] = [0.3183345,0.6816655] vs [0.5183,0.4817], chisq 436.3043
## Mismatched frequencies for 'X:154022952' f[G,T] = [0.2689725,0.7310275] vs [0.4952,0.5048], chisq 559.6953
## Mismatched frequencies for 'X:154346209' f[A,G] = [0.261585,0.7384151] vs [0.4898,0.5102], chisq 570.2496
## Mismatched frequencies for 'X:154616509' f[C,G] = [0.0322364,0.9677636] vs [0.3191,0.6809], chisq 1079.331
## Mismatched frequencies for 'X:154638816' f[C,T] = [0.1601746,0.8398254] vs [0.3763,0.6237], chisq 554.2834
## Mismatched frequencies for 'X:154658332' f[C,G] = [0.2491605,0.7508395] vs [0.4572,0.5428], chisq 479.2089
## Mismatched frequencies for 'X:154851523' f[G,A] = [0.2488247,0.7511753] vs [0.4574,0.5426], chisq 481.6441
## Mismatched frequencies for 'X:154865915' f[G,A] = [0.2484889,0.7515111] vs [0.4574,0.5426], chisq 483.2029
## Mismatched frequencies for 'X:154899846' f[A,G] = [0.2793821,0.7206179] vs [0.4859,0.5141], chisq 467.2099
## Mismatched frequencies for 'X:2703633' f[A,G] = [0.2937576,0.7062423] vs [0.5,0.5], chisq 505.904
## Mismatched frequencies for 'X:2711722' f[C,T] = [0.3182374,0.6817625] vs [0.5347,0.4653], chisq 556.988
## Mismatched frequencies for 'X:2721788' f[A,G] = [0.3653611,0.6346389] vs [0.5521,0.4479], chisq 416.198
## Mismatched frequencies for 'X:2724760' f[T,C] = [0.00122399,0.998776] vs [0.2854,0.7146], chisq 1248.073
## Mismatched frequencies for 'X:2733210' f[G,A] = [0.2001224,0.7998776] vs [0.4337,0.5663], chisq 668.5204
## Mismatched frequencies for 'X:2743627' f[C,A] = [0.05813954,0.9418604] vs [0.3389,0.6611], chisq 1088.013
## Mismatched frequencies for 'X:2744765' f[C,T] = [0.249082,0.750918] vs [0.4746,0.5254], chisq 609.1884
## Mismatched frequencies for 'X:2749521' f[T,C] = [0.1591187,0.8408813] vs [0.4082,0.5918], chisq 777.6825
## Mismatched frequencies for 'X:2777985' f[C,T] = [0.256426,0.743574] vs [0.4772,0.5228], chisq 583.1929
## Mismatched frequencies for 'X:2779570' f[A,G] = [0.2790698,0.7209302] vs [0.4936,0.5064], chisq 548.0859
## Mismatched frequencies for 'X:2780747' f[C,T] = [0.2809058,0.7190943] vs [0.4927,0.5073], chisq 534.2684
## Mismatched frequencies for 'X:2783555' f[T,G] = [0.3035496,0.6964504] vs [0.5029,0.4971], chisq 472.4293
## Mismatched frequencies for 'X:2789848' f[T,G] = [0.1640147,0.8359853] vs [0.4135,0.5865], chisq 776.3454
## Mismatched frequencies for 'X:2791081' f[T,C] = [0.2668299,0.7331701] vs [0.4703,0.5297], chisq 496.3273
## Mismatched frequencies for 'X:2800295' f[G,C] = [0.08384333,0.9161567] vs [0.352,0.648], chisq 969.4425
## Mismatched frequencies for 'X:2848409' f[T,C] = [0.3463892,0.6536108] vs [0.5317,0.4683], chisq 408.2007
## Mismatched frequencies for 'X:2849981' f[C,T] = [0.2760098,0.7239902] vs [0.5036,0.4964], chisq 615.9084
## Mismatched frequencies for 'X:2850901' f[A,G] = [0.3390453,0.6609547] vs [0.5231,0.4769], chisq 402.3984
## Mismatched frequencies for 'X:2852951' f[G,A] = [0.372093,0.627907] vs [0.5489,0.4511], chisq 372.8706
## Mismatched frequencies for 'X:2856155' f[C,T] = [0.3237454,0.6762546] vs [0.5257,0.4743], chisq 484.4984
## Mismatched frequencies for 'X:2865296' f[G,T] = [0.4112607,0.5887393] vs [0.6024,0.3976], chisq 446.7929
## Mismatched frequencies for 'X:2871474' f[G,A] = [0.5110159,0.4889841] vs [0.6807,0.3193], chisq 383.8558
## Mismatched frequencies for 'X:2928555' f[T,C] = [0.1970624,0.8029376] vs [0.4308,0.5692], chisq 670.8747
## Mismatched frequencies for 'X:2931592' f[C,T] = [0.3494492,0.6505508] vs [0.5279,0.4721], chisq 378.4113
## Mismatched frequencies for 'X:2934940' f[G,A] = [0.02386781,0.9761322] vs [0.3024,0.6976], chisq 1150.362
## Mismatched frequencies for 'X:2953505' f[T,C] = [0.3463892,0.6536108] vs [0.5273,0.4727], chisq 388.8875
## Mismatched frequencies for 'X:2966482' f[T,C] = [0.3831089,0.6168911] vs [0.5458,0.4542], chisq 315.5628
## Mismatched frequencies for 'X:2967137' f[G,A] = [0.24541,0.75459] vs [0.4563,0.5437], chisq 536.7261
## Mismatched frequencies for 'X:3002687' f[A,G] = [0.3623011,0.6376989] vs [0.5246,0.4754], chisq 312.9614
## Mismatched frequencies for 'X:3029349' f[C,A] = [0.8543451,0.1456548] vs [0.9435,0.0565], chisq 390.2697
## Mismatched frequencies for 'X:3041617' f[A,G] = [0.4106487,0.5893513] vs [0.5877,0.4123], chisq 380.0736
## Mismatched frequencies for 'X:3108751' f[A,G] = [0.1070991,0.8929009] vs [0.3549,0.6451], chisq 821.802
## Mismatched frequencies for 'X:3162468' f[T,C] = [0.4198287,0.5801713] vs [0.5781,0.4219], chisq 302.4051
## Mismatched frequencies for 'X:3214176' f[C,A] = [0.3549572,0.6450428] vs [0.5223,0.4777], chisq 332.6545
## Mismatched frequencies for 'X:3217180' f[G,A] = [0.3543452,0.6456549] vs [0.5213,0.4787], chisq 331.097
## Mismatched frequencies for 'X:3228653' f[G,C] = [0.4204406,0.5795594] vs [0.6748,0.3252], chisq 846.1277
## Mismatched frequencies for 'X:3233112' f[C,A] = [0.3512852,0.6487148] vs [0.5208,0.4792], chisq 341.3172
## Mismatched frequencies for 'X:3235724' f[C,T] = [0.3463892,0.6536108] vs [0.5196,0.4804], chisq 356.3432
## Mismatched frequencies for 'X:3238733' f[G,A] = [0.4075887,0.5924113] vs [0.5914,0.4086], chisq 410.4054
## Mismatched frequencies for 'X:3239545' f[C,T] = [0.3457772,0.6542228] vs [0.5181,0.4819], chisq 352.6866
## Mismatched frequencies for 'X:3240343' f[G,A] = [0.4051408,0.5948592] vs [0.5854,0.4146], chisq 393.3862
## Mismatched frequencies for 'X:3241256' f[T,C] = [0.3451652,0.6548348] vs [0.516,0.484], chisq 346.6146
## Mismatched frequencies for 'X:3269979' f[T,C] = [0.4938801,0.50612] vs [0.6546,0.3454], chisq 332.8436
## Mismatched frequencies for 'X:3274582' f[T,C] = [0.4259486,0.5740514] vs [0.6041,0.3959], chisq 388.9358
## Mismatched frequencies for 'X:3307365' f[C,T] = [0.3029376,0.6970624] vs [0.4826,0.5174], chisq 385.1244
## Mismatched frequencies for 'X:3325021' f[C,T] = [0.3855569,0.6144431] vs [0.5614,0.4386], chisq 370.2776
## Mismatched frequencies for 'X:3352828' f[A,G] = [0.05385557,0.9461444] vs [0.3132,0.6868], chisq 970.9322
## Mismatched frequencies for 'X:3366261' f[C,T] = [0.2276622,0.7723378] vs [0.4266,0.5734], chisq 486.3535
## Mismatched frequencies for 'X:3421519' f[C,T] = [0.01652387,0.9834762] vs [0.2926,0.7074], chisq 1155.341
## Mismatched frequencies for 'X:3441920' f[T,C] = [0.3108935,0.6891065] vs [0.5322,0.4678], chisq 582.0108
## Mismatched frequencies for 'X:3461241' f[A,G] = [0.4638923,0.5361077] vs [0.6216,0.3784], chisq 309.6196
## Mismatched frequencies for 'X:3517936' f[A,G] = [0.3023256,0.6976744] vs [0.4905,0.5095], chisq 421.7509
## Mismatched frequencies for 'X:3524309' f[T,C] = [0.3133415,0.6866585] vs [0.4864,0.5136], chisq 356.933
## Mismatched frequencies for 'X:3558139' f[G,A] = [0.4571603,0.5428397] vs [0.6146,0.3854], chisq 306.7078
## Mismatched frequencies for 'X:3579857' f[A,G] = [0.2221542,0.7778458] vs [0.4376,0.5624], chisq 566.5529
## Mismatched frequencies for 'X:3592847' f[C,T] = [0.1095471,0.8904529] vs [0.3539,0.6461], chisq 799.9216
## Mismatched frequencies for 'X:3593659' f[C,G] = [0.4332925,0.5667075] vs [0.5932,0.4068], chisq 311.3811
## Mismatched frequencies for 'X:3608067' f[T,C] = [0.2766218,0.7233782] vs [0.5007,0.4993], chisq 597.2749
## Mismatched frequencies for 'X:3665636' f[A,G] = [0.3843329,0.615667] vs [0.556,0.444], chisq 352.2889
## Mismatched frequencies for 'X:3667552' f[A,G] = [0.378213,0.621787] vs [0.5624,0.4376], chisq 406.2868
## Mismatched frequencies for 'X:3679141' f[A,G] = [0.4550184,0.5449817] vs [0.6131,0.3869], chisq 308.8152
## Mismatched frequencies for 'X:3689052' f[T,C] = [0.25153,0.74847] vs [0.4547,0.5453], chisq 498.3796
## Mismatched frequencies for 'X:3707987' f[A,C] = [0.1835985,0.8164015] vs [0.4126,0.5874], chisq 653.5145
## Mismatched frequencies for 'X:3711421' f[C,T] = [0.4755202,0.5244798] vs [0.6341,0.3659], chisq 316.7943
## Mismatched frequencies for 'X:3722454' f[A,G] = [0.4094247,0.5905753] vs [0.5795,0.4205], chisq 349.252
## Mismatched frequencies for 'X:3727017' f[G,T] = [0.4657283,0.5342717] vs [0.6297,0.3703], chisq 337.064
## Mismatched frequencies for 'X:3729943' f[C,A] = [0.4877601,0.5122399] vs [0.6476,0.3524], chisq 326.5326
## Mismatched frequencies for 'X:3736489' f[C,T] = [0.3225214,0.6774786] vs [0.5182,0.4818], chisq 454.7586
## Mismatched frequencies for 'X:3739077' f[A,G] = [0.376989,0.623011] vs [0.5662,0.4338], chisq 429.2996
## Mismatched frequencies for 'X:3870419' f[T,C] = [0.06976744,0.9302326] vs [0.319,0.681], chisq 884.7109
## Mismatched frequencies for 'X:4009487' f[A,G] = [0.09730722,0.9026928] vs [0.3446,0.6554], chisq 831.7271
## Mismatched frequencies for 'X:4020730' f[G,A] = [0.02876377,0.9712362] vs [0.2948,0.7052], chisq 1065.002
## Mismatched frequencies for 'X:4041291' f[G,A] = [0.1805385,0.8194615] vs [0.4183,0.5817], chisq 701.4141
## Mismatched frequencies for 'X:4048854' f[G,T] = [0.1113831,0.8886169] vs [0.3605,0.6395], chisq 823.8383
## Mismatched frequencies for 'X:4111484' f[C,T] = [0.3671971,0.632803] vs [0.5682,0.4318], chisq 484.6543
## Mismatched frequencies for 'X:4117724' f[G,A] = [0.3671971,0.632803] vs [0.5683,0.4317], chisq 485.1545
## Mismatched frequencies for 'X:4135974' f[A,C] = [0.03059975,0.9694002] vs [0.2946,0.7054], chisq 1048.798
## Mismatched frequencies for 'X:4385969' f[G,T] = [0.1499388,0.8500612] vs [0.3667,0.6333], chisq 615.7802
## Mismatched frequencies for 'X:4526525' f[T,C] = [0.05140759,0.9485924] vs [0.3045,0.6955], chisq 940.6367
## Mismatched frequencies for 'X:4618823' f[A,G] = [0.2160343,0.7839657] vs [0.4318,0.5682], chisq 570.5616
## Mismatched frequencies for 'X:4712340' f[C,A] = [0.3873929,0.6126071] vs [0.5503,0.4497], chisq 316.7794
## Mismatched frequencies for 'X:4730780' f[A,G] = [0.2343941,0.7656059] vs [0.4273,0.5727], chisq 456.8768
## Mismatched frequencies for 'X:4899267' f[C,T] = [0.3623011,0.6376989] vs [0.5426,0.4574], chisq 387.1386
## Mismatched frequencies for 'X:4971902' f[G,A] = [0.09730722,0.9026928] vs [0.334,0.666], chisq 774.4449
## Mismatched frequencies for 'X:5071560' f[A,C] = [0.05752754,0.9424725] vs [0.3048,0.6952], chisq 896.2635
## Mismatched frequencies for 'X:5096158' f[G,A] = [0.05569155,0.9443085] vs [0.3035,0.6965], chisq 902.7806
## Mismatched frequencies for 'X:5117394' f[C,T] = [0.1474908,0.8525092] vs [0.3724,0.6276], chisq 658.6044
## Mismatched frequencies for 'X:5153366' f[T,G] = [0.3647491,0.6352509] vs [0.5421,0.4579], chisq 374.5643
## Mismatched frequencies for 'X:5162526' f[A,G] = [0.8635251,0.1364749] vs [0.9725,0.0275], chisq 977.7878
## Mismatched frequencies for 'X:5346327' f[G,A] = [0.5764994,0.4235006] vs [0.7256,0.2744], chisq 321.8768
## Mismatched frequencies for 'X:5366090' f[G,A] = [0.07772338,0.9222766] vs [0.3269,0.6731], chisq 871.1116
## Mismatched frequencies for 'X:5380234' f[A,C] = [0.4406365,0.5593635] vs [0.602,0.398], chisq 318.9576
## Mismatched frequencies for 'X:5464341' f[G,T] = [0.5501836,0.4498164] vs [0.704,0.296], chisq 328.381
## Mismatched frequencies for 'X:5469735' f[C,A] = [0.373317,0.626683] vs [0.5516,0.4484], chisq 379.388
## Mismatched frequencies for 'X:5493643' f[A,G] = [0.2913096,0.7086904] vs [0.5005,0.4995], chisq 520.4518
## Mismatched frequencies for 'X:5494102' f[C,T] = [0.2913096,0.7086904] vs [0.5006,0.4994], chisq 520.9425
## Mismatched frequencies for 'X:5514581' f[A,C] = [0.2656059,0.7343941] vs [0.4909,0.5091], chisq 604.9632
## Mismatched frequencies for 'X:5572299' f[C,T] = [0.4828641,0.5171359] vs [0.65,0.35], chisq 357.7367
## Mismatched frequencies for 'X:5602358' f[C,T] = [0.3059976,0.6940025] vs [0.5056,0.4944], chisq 473.4825
## Mismatched frequencies for 'X:5651118' f[G,A] = [0.4638923,0.5361077] vs [0.6364,0.3636], chisq 375.2782
## Mismatched frequencies for 'X:5663901' f[T,C] = [0.2695839,0.7304162] vs [0.4725,0.5275], chisq 493.2055
## Mismatched frequencies for 'X:5664762' f[A,C] = [0.2698898,0.7301102] vs [0.4771,0.5229], chisq 513.534
## Mismatched frequencies for 'X:5679429' f[A,G] = [0.3365973,0.6634027] vs [0.516,0.484], chisq 382.2543
## Mismatched frequencies for 'X:5740117' f[G,T] = [0.3286414,0.6713586] vs [0.5107,0.4893], chisq 393.7114
## Mismatched frequencies for 'X:5758732' f[T,C] = [0.1481028,0.8518972] vs [0.376,0.624], chisq 673.3421
## Mismatched frequencies for 'X:5775887' f[T,C] = [0.4137087,0.5862913] vs [0.5735,0.4265], chisq 307.5154
## Mismatched frequencies for 'X:5777815' f[T,C] = [0.1627907,0.8372093] vs [0.385,0.615], chisq 632.7816
## Mismatched frequencies for 'X:5895939' f[A,G] = [0.1915545,0.8084455] vs [0.4295,0.5705], chisq 696.1341
## Mismatched frequencies for 'X:5931577' f[G,A] = [0.5893513,0.4106487] vs [0.9675,0.0325], chisq 6784.642
## Mismatched frequencies for 'X:5986250' f[T,C] = [0.05569155,0.9443085] vs [0.3188,0.6812], chisq 988.8145
## Mismatched frequencies for 'X:6001798' f[T,C] = [0.5097919,0.4902081] vs [0.6672,0.3328], chisq 324.5875
## Mismatched frequencies for 'X:6052481' f[T,C] = [0.3255814,0.6744186] vs [0.5412,0.4588], chisq 553.1834
## Mismatched frequencies for 'X:6052796' f[T,C] = [0.4761322,0.5238678] vs [0.6395,0.3605], chisq 337.9503
## Mismatched frequencies for 'X:6118424' f[C,T] = [0.3225214,0.6774786] vs [0.536,0.464], chisq 541.8446
## Mismatched frequencies for 'X:6128317' f[A,G] = [0.6670747,0.3329254] vs [0.8521,0.1479], chisq 738.4276
## Mismatched frequencies for 'X:6133812' f[G,A] = [0.3898409,0.6101591] vs [0.5694,0.4306], chisq 387.2691
## Mismatched frequencies for 'X:6184334' f[C,T] = [0.06058751,0.9394125] vs [0.3171,0.6829], chisq 941.9039
## Mismatched frequencies for 'X:6224563' f[T,G] = [0.006731946,0.9932681] vs [0.2845,0.7155], chisq 1193.361
## Mismatched frequencies for 'X:6248920' f[C,T] = [0.369645,0.6303549] vs [0.5503,0.4497], chisq 389.3863
## Mismatched frequencies for 'X:6418059' f[G,A] = [0.2619339,0.7380661] vs [0.4682,0.5318], chisq 510.5421
## Mismatched frequencies for 'X:6564943' f[A,G] = [0.02264382,0.9773562] vs [0.2998,0.7002], chisq 1145.373
## Mismatched frequencies for 'X:6586217' f[C,G] = [0.4730722,0.5269278] vs [0.6279,0.3721], chisq 300.24
## Mismatched frequencies for 'X:6638790' f[C,T] = [0.5348837,0.4651163] vs [0.6843,0.3157], chisq 300.1011
## Mismatched frequencies for 'X:6651690' f[A,G] = [0.5189719,0.4810281] vs [0.6723,0.3277], chisq 310.3104
## Mismatched frequencies for 'X:6667557' f[G,A] = [0.3653611,0.6346389] vs [0.5528,0.4472], chisq 419.3999
## Mismatched frequencies for 'X:6669804' f[G,A] = [0.376377,0.623623] vs [0.5523,0.4477], chisq 369.5077
## Mismatched frequencies for 'X:6669882' f[T,C] = [0.3482252,0.6517748] vs [0.5482,0.4518], chisq 476.6525
## Mismatched frequencies for 'X:6670409' f[C,G] = [0.05201959,0.9479804] vs [0.3284,0.6716], chisq 1073.669
## Mismatched frequencies for 'X:6682244' f[A,G] = [0.0501836,0.9498164] vs [0.3162,0.6838], chisq 1016.587
## Mismatched frequencies for 'X:6692559' f[A,G] = [0.377601,0.622399] vs [0.6039,0.3961], chisq 625.5414
## Mismatched frequencies for 'X:6696168' f[G,A] = [0.2839657,0.7160343] vs [0.5221,0.4779], chisq 673.5007
## Mismatched frequencies for 'X:6710327' f[T,C] = [0,1] vs [0.3367,0.6633], chisq 1585.295
## Mismatched frequencies for 'X:6715267' f[A,G] = [0.3531212,0.6468788] vs [0.5768,0.4232], chisq 601.8586
## Mismatched frequencies for 'X:6865519' f[C,A] = [0.3482252,0.6517748] vs [0.5324,0.4676], chisq 403.2508
## Mismatched frequencies for 'X:6882880' f[A,G] = [0.3494492,0.6505508] vs [0.534,0.466], chisq 404.982
## Mismatched frequencies for 'X:6975782' f[C,G] = [0.4130967,0.5869033] vs [0.5862,0.4138], chisq 363.0728
## Mismatched frequencies for 'X:7027737' f[C,A] = [0.4130967,0.5869033] vs [0.5862,0.4138], chisq 363.0728
## Mismatched frequencies for 'X:7146353' f[G,A] = [0.4228886,0.5771114] vs [0.5889,0.4111], chisq 334.5913
## Mismatched frequencies for 'X:7214805' f[T,G] = [0.2643819,0.7356181] vs [0.4643,0.5357], chisq 480.2751
## Mismatched frequencies for 'X:7260656' f[T,C] = [0.2882497,0.7117503] vs [0.4814,0.5186], chisq 445.4257
## Mismatched frequencies for 'X:7388629' f[G,A] = [0.369645,0.6303549] vs [0.5495,0.4505], chisq 385.8699
## Mismatched frequencies for 'X:7426907' f[G,A] = [0.2399021,0.7600979] vs [0.4259,0.5741], chisq 424.9862
## Mismatched frequencies for 'X:7786013' f[C,T] = [0.07343941,0.9265606] vs [0.3239,0.6761], chisq 885.2615
## Mismatched frequencies for 'X:7819527' f[T,G] = [0.3580172,0.6419828] vs [0.5212,0.4788], chisq 316.3091
## Mismatched frequencies for 'X:8039180' f[T,C] = [0.3194614,0.6805385] vs [0.4926,0.5074], chisq 356.7964
## Mismatched frequencies for 'X:8141017' f[T,C] = [0.1774786,0.8225214] vs [0.4002,0.5998], chisq 625.254
## Mismatched frequencies for 'X:8180082' f[G,A] = [0.3427173,0.6572828] vs [0.529,0.471], chisq 412.3711
## Mismatched frequencies for 'X:8328539' f[T,C] = [0.2227662,0.7772338] vs [0.4468,0.5532], chisq 609.3367
## Mismatched frequencies for 'X:8376862' f[C,T] = [0.1554467,0.8445532] vs [0.3877,0.6123], chisq 689.8523
## Mismatched frequencies for 'X:8488346' f[T,G] = [0.2423501,0.75765] vs [0.4635,0.5365], chisq 588.4281
## Mismatched frequencies for 'X:8491574' f[C,G] = [0.2258262,0.7741738] vs [0.4449,0.5551], chisq 583.1679
## Mismatched frequencies for 'X:8499079' f[T,C] = [0.6432068,0.3567931] vs [0.7922,0.2078], chisq 382.3317
## Mismatched frequencies for 'X:8504833' f[C,T] = [0.3488372,0.6511628] vs [0.5327,0.4673], chisq 401.9023
## Mismatched frequencies for 'X:8508062' f[C,T] = [0.2680539,0.7319462] vs [0.4699,0.5301], chisq 488.4841
## Mismatched frequencies for 'X:8549542' f[G,A] = [0.2717258,0.7282742] vs [0.4765,0.5235], chisq 501.5945
## Mismatched frequencies for 'X:8609515' f[C,T] = [0.03488372,0.9651163] vs [0.3103,0.6897], chisq 1104.987
## Mismatched frequencies for 'X:8819197' f[T,C] = [0.05385557,0.9461444] vs [0.3108,0.6892], chisq 957.3405
## Mismatched frequencies for 'X:8882597' f[A,G] = [0.03794369,0.9620563] vs [0.3096,0.6904], chisq 1075.831
## Mismatched frequencies for 'X:8918959' f[T,C] = [0.4522644,0.5477356] vs [0.6209,0.3791], chisq 353.4791
## Mismatched frequencies for 'X:8941817' f[A,G] = [0.3463892,0.6536108] vs [0.535,0.465], chisq 423.0336
## Mismatched frequencies for 'X:8957561' f[A,G] = [0.4326805,0.5673194] vs [0.6035,0.3965], chisq 357.5991
## Mismatched frequencies for 'X:8963640' f[A,G] = [0.2184823,0.7815177] vs [0.4356,0.5644], chisq 576.2287
## Mismatched frequencies for 'X:9032753' f[G,T] = [0.01101591,0.9889841] vs [0.284,0.716], chisq 1152.789
## Mismatched frequencies for 'X:9078431' f[T,C] = [0.02203182,0.9779682] vs [0.2893,0.7107], chisq 1089.286
## Mismatched frequencies for 'X:9088190' f[C,T] = [0.3347613,0.6652387] vs [0.5249,0.4751], chisq 429.4702
## Mismatched frequencies for 'X:9104639' f[G,A] = [0.5226438,0.4773562] vs [0.6755,0.3245], chisq 309.8316
## Mismatched frequencies for 'X:9165588' f[A,G] = [0.3457772,0.6542228] vs [0.5271,0.4729], chisq 390.6528
## Mismatched frequencies for 'X:9175020' f[T,G] = [0.2203182,0.7796817] vs [0.427,0.573], chisq 525.0774
## Mismatched frequencies for 'X:9177044' f[T,C] = [0.1640147,0.8359853] vs [0.3918,0.6082], chisq 660.1993
## Mismatched frequencies for 'X:9185874' f[C,T] = [0.1787026,0.8212974] vs [0.394,0.606], chisq 587.6516
## Mismatched frequencies for 'X:9233447' f[A,G] = [0.06487148,0.9351285] vs [0.3309,0.6691], chisq 988.4518
## Mismatched frequencies for 'X:9247999' f[T,G] = [0.2943696,0.7056304] vs [0.5012,0.4988], chisq 508.7073
## Mismatched frequencies for 'X:9256304' f[T,C] = [0.08384333,0.9161567] vs [0.3398,0.6602], chisq 899.3579
## Mismatched frequencies for 'X:9269262' f[C,G] = [0.1750306,0.8249694] vs [0.4283,0.5717], chisq 790.2775
## Mismatched frequencies for 'X:9293751' f[A,G] = [0.2325581,0.7674419] vs [0.4756,0.5244], chisq 707.6999
## Mismatched frequencies for 'X:9323997' f[G,A] = [0.5226438,0.4773562] vs [0.6837,0.3163], chisq 347.7895
## Mismatched frequencies for 'X:9328996' f[A,G] = [0.1707466,0.8292534] vs [0.4222,0.5778], chisq 782.7559
## Mismatched frequencies for 'X:9349717' f[A,G] = [0.5257038,0.4742962] vs [0.6802,0.3198], chisq 318.6368
## Mismatched frequencies for 'X:9360426' f[T,C] = [0.2931457,0.7068543] vs [0.512,0.488], chisq 569.0048
## Mismatched frequencies for 'X:9371882' f[C,A] = [0.4271726,0.5728274] vs [0.6003,0.3997], chisq 366.4383
## Mismatched frequencies for 'X:9387424' f[G,A] = [0.2656059,0.7343941] vs [0.4855,0.5145], chisq 577.0413
## Mismatched frequencies for 'X:9409852' f[G,A] = [0.2906977,0.7093023] vs [0.477,0.523], chisq 414.8815
## Mismatched frequencies for 'X:9428940' f[T,C] = [0.3347613,0.6652387] vs [0.5525,0.4475], chisq 565.476
## Mismatched frequencies for 'X:9450403' f[C,G] = [0.3929009,0.6070991] vs [0.5655,0.4345], chisq 357.3441
## Mismatched frequencies for 'X:9466319' f[G,A] = [0.3561811,0.6438189] vs [0.5444,0.4556], chisq 421.9941
## Mismatched frequencies for 'X:9484447' f[T,C] = [0.4498164,0.5501836] vs [0.6119,0.3881], chisq 324.2353
## Mismatched frequencies for 'X:9531042' f[C,T] = [0.4051408,0.5948592] vs [0.5731,0.4269], chisq 339.5726
## Mismatched frequencies for 'X:9538206' f[G,A] = [0.371481,0.628519] vs [0.5428,0.4572], chisq 349.6117
## Mismatched frequencies for 'X:9546184' f[C,T] = [0.4253366,0.5746634] vs [0.6031,0.3969], chisq 386.9745
## Mismatched frequencies for 'X:9567613' f[A,C] = [0.05752754,0.9424725] vs [0.3158,0.6842], chisq 957.6672
## Mismatched frequencies for 'X:9591146' f[A,G] = [0.4008568,0.5991432] vs [0.587,0.413], chisq 419.7395
## Mismatched frequencies for 'X:9596149' f[G,T] = [0.4088127,0.5911873] vs [0.598,0.402], chisq 436.4567
## Mismatched frequencies for 'X:9605377' f[A,C] = [0.08017136,0.9198287] vs [0.3245,0.6755], chisq 840.6049
## Mismatched frequencies for 'X:9644700' f[G,A] = [0.1425949,0.8574051] vs [0.3688,0.6312], chisq 669.4917
## Mismatched frequencies for 'X:9655927' f[G,A] = [0.118115,0.8818849] vs [0.3554,0.6446], chisq 751.8779
## Mismatched frequencies for 'X:9668985' f[A,G] = [0.1988984,0.8011016] vs [0.4178,0.5822], chisq 593.9266
## Mismatched frequencies for 'X:9695630' f[T,C] = [0.09179927,0.9082007] vs [0.3564,0.6436], chisq 937.0603
## Mismatched frequencies for 'X:9741101' f[C,T] = [0.2001224,0.7998776] vs [0.4298,0.5702], chisq 648.0773
## Mismatched frequencies for 'X:9743655' f[G,A] = [0.3518972,0.6481028] vs [0.548,0.452], chisq 458.39
## Mismatched frequencies for 'X:9751474' f[T,C] = [0.3243574,0.6756426] vs [0.554,0.446], chisq 629.0642
## Mismatched frequencies for 'X:9757298' f[G,A] = [0.3947369,0.6052632] vs [0.5681,0.4319], chisq 360.8908
## Mismatched frequencies for 'X:9763942' f[T,C] = [0.03977968,0.9602203] vs [0.3102,0.6898], chisq 1064.462
## Mismatched frequencies for 'X:9766019' f[T,C] = [0.2019584,0.7980416] vs [0.431,0.569], chisq 643.886
## Mismatched frequencies for 'X:9787331' f[T,C] = [0.2809058,0.7190943] vs [0.4722,0.5278], chisq 438.2038
## Mismatched frequencies for 'X:9795725' f[C,T] = [0.3176255,0.6823745] vs [0.4907,0.5093], chisq 356.6635
## Mismatched frequencies for 'X:9806794' f[C,A] = [0.3372093,0.6627907] vs [0.5335,0.4665], chisq 458.0508
## Mismatched frequencies for 'X:9814135' f[G,A] = [0.2221542,0.7778458] vs [0.4347,0.5653], chisq 552.4016
## Mismatched frequencies for 'X:9815802' f[G,A] = [0.253366,0.746634] vs [0.4581,0.5419], chisq 505.2493
## Mismatched frequencies for 'X:9825109' f[G,A] = [0.4106487,0.5893513] vs [0.5798,0.4202], chisq 345.5369
## Mismatched frequencies for 'X:9830445' f[G,T] = [0.3139535,0.6860465] vs [0.5197,0.4803], chisq 502.7596
## Mismatched frequencies for 'X:9836119' f[T,C] = [0.1976744,0.8023256] vs [0.4301,0.5699], chisq 663.6538
## Mismatched frequencies for 'X:9867511' f[C,T] = [0.3212974,0.6787026] vs [0.5245,0.4755], chisq 490.4711
## Mismatched frequencies for 'X:9942915' f[T,C] = [0.4314565,0.5685434] vs [0.5998,0.4002], chisq 346.4516
## Mismatched frequencies for 'X:9945032' f[A,G] = [0.00122399,0.998776] vs [0.2931,0.7069], chisq 1294.277
## Mismatched frequencies for 'X:9948824' f[A,G] = [0.4082007,0.5917993] vs [0.5766,0.4234], chisq 341.9245
## Mismatched frequencies for 'X:10001651' f[A,G] = [0.03243574,0.9675643] vs [0.2959,0.7041], chisq 1041.284
## Mismatched frequencies for 'X:10054942' f[T,C] = [0.3225214,0.6774786] vs [0.4992,0.5008], chisq 371.1603
## Mismatched frequencies for 'X:10162224' f[G,A] = [0.4455324,0.5544676] vs [0.6087,0.3913], chisq 327.7289
## Mismatched frequencies for 'X:10164535' f[T,G] = [0.2301102,0.7698898] vs [0.4407,0.5593], chisq 540.0375
## Mismatched frequencies for 'X:10180880' f[G,C] = [0.4804161,0.5195838] vs [0.688,0.312], chisq 577.8017
## Mismatched frequencies for 'X:10239667' f[T,C] = [0.04467564,0.9553244] vs [0.3004,0.6996], chisq 969.4938
## Mismatched frequencies for 'X:10245711' f[A,G] = [0.1915545,0.8084455] vs [0.4065,0.5935], chisq 578.3407
## Mismatched frequencies for 'X:10360284' f[A,G] = [0.09730722,0.9026928] vs [0.3424,0.6576], chisq 819.6812
## Mismatched frequencies for 'X:10542627' f[C,A] = [0.2906977,0.7093023] vs [0.4921,0.5079], chisq 483.0898
## Mismatched frequencies for 'X:10627109' f[T,C] = [0.9608323,0.03916769] vs [0.9976,0.0024], chisq 700.6341
## Mismatched frequencies for 'X:10710256' f[C,A] = [0.4847001,0.5152999] vs [0.6443,0.3557], chisq 324.3505
## Mismatched frequencies for 'X:10735037' f[C,T] = [0.08445533,0.9155447] vs [0.33,0.67], chisq 840.6082
## Mismatched frequencies for 'X:10866441' f[C,T] = [0.4082007,0.5917993] vs [0.5797,0.4203], chisq 355.1378
## Mismatched frequencies for 'X:10872756' f[C,T] = [0.2698898,0.7301102] vs [0.4731,0.5269], chisq 494.5309
## Mismatched frequencies for 'X:10980118' f[C,T] = [0.05354957,0.9464504] vs [0.308,0.692], chisq 943.9202
## Mismatched frequencies for 'X:11313027' f[T,C] = [0.3261934,0.6738066] vs [0.5006,0.4994], chisq 361.6008
## Mismatched frequencies for 'X:11517970' f[T,C] = [0.02631579,0.9736842] vs [0.2909,0.7091], chisq 1062.8
## Mismatched frequencies for 'X:11565048' f[C,T] = [0.03794369,0.9620563] vs [0.2997,0.7003], chisq 1018.616
## Mismatched frequencies for 'X:11722528' f[A,G] = [0.2368421,0.7631579] vs [0.4423,0.5577], chisq 513.3621
## Mismatched frequencies for 'X:11801228' f[C,G] = [0.2190942,0.7809057] vs [0.4266,0.5734], chisq 529.4644
## Mismatched frequencies for 'X:11823498' f[G,C] = [0.09730722,0.9026928] vs [0.3555,0.6445], chisq 892.6477
## Mismatched frequencies for 'X:11846155' f[A,G] = [0.2656059,0.7343941] vs [0.4748,0.5252], chisq 523.866
## Mismatched frequencies for 'X:11923609' f[A,G] = [0.4834761,0.5165238] vs [0.6403,0.3597], chisq 311.8844
## Mismatched frequencies for 'X:12094341' f[T,C] = [0.09118727,0.9088127] vs [0.3349,0.6651], chisq 820.6943
## Mismatched frequencies for 'X:12304998' f[T,C] = [0.1936964,0.8063036] vs [0.4198,0.5802], chisq 632.9304
## Mismatched frequencies for 'X:12432922' f[C,A] = [0.4516524,0.5483476] vs [0.6256,0.3744], chisq 377.532
## Mismatched frequencies for 'X:12434769' f[T,C] = [0.3506732,0.6493268] vs [0.5325,0.4675], chisq 393.0501
## Mismatched frequencies for 'X:12437896' f[T,C] = [0.3261934,0.6738066] vs [0.5159,0.4841], chisq 427.4277
## Mismatched frequencies for 'X:12441976' f[A,G] = [0.4026928,0.5973072] vs [0.5809,0.4191], chisq 383.5804
## Mismatched frequencies for 'X:12460765' f[G,A] = [0.243574,0.756426] vs [0.4608,0.5392], chisq 568.3559
## Mismatched frequencies for 'X:12499328' f[C,T] = [0.1768666,0.8231334] vs [0.4062,0.5938], chisq 659.3809
## Mismatched frequencies for 'X:12542800' f[G,C] = [0.3384333,0.6615667] vs [0.5204,0.4796], chisq 393.2805
## Mismatched frequencies for 'X:12570783' f[G,T] = [0.2374541,0.7625459] vs [0.4381,0.5619], chisq 490.7814
## Mismatched frequencies for 'X:12573070' f[G,A] = [0.2784578,0.7215422] vs [0.4582,0.5418], chisq 388.979
## Mismatched frequencies for 'X:12579786' f[G,A] = [0.3286414,0.6713586] vs [0.4969,0.5031], chisq 336.6999
## Mismatched frequencies for 'X:12598791' f[G,A] = [0.2821297,0.7178702] vs [0.466,0.534], chisq 405.7195
## Mismatched frequencies for 'X:12625810' f[G,A] = [0.3188494,0.6811506] vs [0.5151,0.4849], chisq 457.4356
## Mismatched frequencies for 'X:12673545' f[C,T] = [0.246022,0.753978] vs [0.4489,0.5511], chisq 498.5105
## Mismatched frequencies for 'X:12697481' f[T,C] = [0.6132191,0.3867809] vs [0.772,0.228], chisq 407.4859
## Mismatched frequencies for 'X:12717744' f[G,C] = [0.3231334,0.6768666] vs [0.5005,0.4995], chisq 373.9961
## Mismatched frequencies for 'X:12755846' f[A,G] = [0.2821297,0.7178702] vs [0.5003,0.4997], chisq 566.1825
## Mismatched frequencies for 'X:12760070' f[C,T] = [0.2717258,0.7282742] vs [0.4924,0.5076], chisq 580.1492
## Mismatched frequencies for 'X:12770756' f[T,G] = [0.03549572,0.9645043] vs [0.3075,0.6925], chisq 1083.495
## Mismatched frequencies for 'X:12791478' f[A,C] = [0.1872705,0.8127295] vs [0.4133,0.5867], chisq 636.1024
## Mismatched frequencies for 'X:12801877' f[C,T] = [0.50918,0.4908201] vs [0.6615,0.3385], chisq 301.8489
## Mismatched frequencies for 'X:12807342' f[T,G] = [0.1891065,0.8108935] vs [0.4266,0.5734], chisq 695.0334
## Mismatched frequencies for 'X:12809661' f[G,A] = [0.369033,0.630967] vs [0.5547,0.4453], chisq 411.7582
## Mismatched frequencies for 'X:12814690' f[A,G] = [0.3671971,0.632803] vs [0.5523,0.4477], chisq 408.9779
## Mismatched frequencies for 'X:12837558' f[C,T] = [0.2270502,0.7729498] vs [0.4453,0.5547], chisq 578.6207
## Mismatched frequencies for 'X:12838934' f[A,G] = [0.3604651,0.6395349] vs [0.5483,0.4517], chisq 420.6614
## Mismatched frequencies for 'X:12849523' f[C,T] = [0.2203182,0.7796817] vs [0.4395,0.5605], chisq 585.7616
## Mismatched frequencies for 'X:12864700' f[C,A] = [0.1376989,0.8623011] vs [0.3731,0.6269], chisq 721.7283
## Mismatched frequencies for 'X:12875371' f[G,A] = [0.2288862,0.7711138] vs [0.4532,0.5468], chisq 608.6243
## Mismatched frequencies for 'X:12915902' f[T,C] = [0.2340881,0.7659119] vs [0.4407,0.5593], chisq 519.7064
## Mismatched frequencies for 'X:12916457' f[A,G] = [0.0501836,0.9498164] vs [0.3133,0.6867], chisq 999.8822
## Mismatched frequencies for 'X:12971524' f[C,T] = [0.2668299,0.7331701] vs [0.4786,0.5214], chisq 536.1917
## Mismatched frequencies for 'X:12986953' f[G,A] = [0.4706242,0.5293758] vs [0.6358,0.3642], chisq 344.0807
## Mismatched frequencies for 'X:13009825' f[A,G] = [0.1799266,0.8200734] vs [0.3963,0.6037], chisq 592.1533
## Mismatched frequencies for 'X:13026861' f[C,T] = [0.05446756,0.9455324] vs [0.3069,0.6931], chisq 930.8127
## Mismatched frequencies for 'X:13029207' f[A,G] = [0.2809058,0.7190943] vs [0.477,0.523], chisq 459.7736
## Mismatched frequencies for 'X:13191310' f[T,C] = [0.2851897,0.7148102] vs [0.4916,0.5084], chisq 507.5173
## Mismatched frequencies for 'X:13227350' f[C,T] = [0.2937576,0.7062423] vs [0.4755,0.5245], chisq 394.9603
## Mismatched frequencies for 'X:13232833' f[C,T] = [0.2594859,0.7405141] vs [0.447,0.553], chisq 425.9858
## Mismatched frequencies for 'X:13267079' f[G,A] = [0.4308445,0.5691555] vs [0.5962,0.4038], chisq 333.5061
## Mismatched frequencies for 'X:13376608' f[G,A] = [0.09179927,0.9082007] vs [0.3395,0.6605], chisq 841.6264
## Mismatched frequencies for 'X:13438769' f[A,G] = [0.2790698,0.7209302] vs [0.4877,0.5123], chisq 518.9939
## Mismatched frequencies for 'X:13498278' f[G,A] = [0.3953488,0.6046512] vs [0.5675,0.4325], chisq 355.7892
## Mismatched frequencies for 'X:13535330' f[A,G] = [0.4198287,0.5801713] vs [0.5892,0.4108], chisq 348.2708
## Mismatched frequencies for 'X:13606861' f[C,T] = [0.3188494,0.6811506] vs [0.5127,0.4873], chisq 446.3463
## Mismatched frequencies for 'X:13640788' f[A,G] = [0.4235006,0.5764994] vs [0.5836,0.4164], chisq 310.3232
## Mismatched frequencies for 'X:13681115' f[C,T] = [0.4583843,0.5416157] vs [0.6154,0.3846], chisq 305.2727
## Mismatched frequencies for 'X:13681638' f[C,T] = [0.4583843,0.5416157] vs [0.6154,0.3846], chisq 305.2727
## Mismatched frequencies for 'X:13681679' f[G,T] = [0.4473684,0.5526316] vs [0.6077,0.3923], chisq 316.254
## Mismatched frequencies for 'X:13714062' f[A,G] = [0.3806609,0.6193391] vs [0.5415,0.4585], chisq 308.1242
## Mismatched frequencies for 'X:13850785' f[C,T] = [0.3090575,0.6909425] vs [0.4793,0.5207], chisq 346.0358
## Mismatched frequencies for 'X:13860540' f[C,T] = [0.3206854,0.6793145] vs [0.4961,0.5039], chisq 366.03
## Mismatched frequencies for 'X:13891347' f[G,A] = [0.1585067,0.8414932] vs [0.3889,0.6111], chisq 677.7844
## Mismatched frequencies for 'X:13938480' f[C,T] = [0.2913096,0.7086904] vs [0.4823,0.5177], chisq 435.3818
## Mismatched frequencies for 'X:14081397' f[A,G] = [0.1193391,0.8806609] vs [0.3676,0.6324], chisq 809.9371
## Mismatched frequencies for 'X:14110696' f[T,G] = [0.02264382,0.9773562] vs [0.2928,0.7072], chisq 1104.382
## Mismatched frequencies for 'X:14111541' f[C,G] = [0.1413709,0.8586291] vs [0.3718,0.6282], chisq 692.3271
## Mismatched frequencies for 'X:14154696' f[A,G] = [0.4485924,0.5514076] vs [0.608,0.392], chisq 312.7124
## Mismatched frequencies for 'X:14585133' f[C,T] = [0.4388005,0.5611995] vs [0.6068,0.3932], chisq 346.8029
## Mismatched frequencies for 'X:14602610' f[G,A] = [0.3941248,0.6058751] vs [0.5743,0.4257], chisq 390.7793
## Mismatched frequencies for 'X:14711561' f[C,A] = [0.4320686,0.5679315] vs [0.6006,0.3994], chisq 347.4158
## Mismatched frequencies for 'X:14836765' f[G,A] = [0.3861689,0.6138311] vs [0.577,0.423], chisq 438.7295
## Mismatched frequencies for 'X:14862289' f[A,G] = [0.02386781,0.9761322] vs [0.2916,0.7084], chisq 1087.172
## Mismatched frequencies for 'X:14898674' f[A,G] = [0.3610771,0.6389229] vs [0.5574,0.4426], chisq 460.6251
## Mismatched frequencies for 'X:14952757' f[C,T] = [0.4283966,0.5716034] vs [0.6182,0.3818], chisq 446.0029
## Mismatched frequencies for 'X:15115139' f[G,C] = [0.9559364,0.04406365] vs [0.9955,0.0045], chisq 577.2005
## Mismatched frequencies for 'X:15205172' f[G,A] = [0.01529988,0.9847001] vs [0.2949,0.7051], chisq 1179.506
## Mismatched frequencies for 'X:15226080' f[C,T] = [0.3518972,0.6481028] vs [0.529,0.471], chisq 372.7607
## Mismatched frequencies for 'X:15243610' f[T,C] = [0.03182375,0.9681762] vs [0.2986,0.7014], chisq 1061.791
## Mismatched frequencies for 'X:15262432' f[A,C] = [0.1988984,0.8011016] vs [0.4232,0.5768], chisq 621.0528
## Mismatched frequencies for 'X:15263265' f[T,C] = [0.2190942,0.7809057] vs [0.4396,0.5604], chisq 592.868
## Mismatched frequencies for 'X:15415583' f[C,T] = [0.4308445,0.5691555] vs [0.5883,0.4117], chisq 301.0247
## Mismatched frequencies for 'X:15496068' f[T,C] = [0.2891677,0.7108323] vs [0.4928,0.5072], chisq 493.7956
## Mismatched frequencies for 'X:15562162' f[C,T] = [0.3531212,0.6468788] vs [0.5219,0.4781], chisq 338.3784
## Mismatched frequencies for 'X:15614145' f[G,A] = [0.369645,0.6303549] vs [0.5351,0.4649], chisq 325.6469
## Mismatched frequencies for 'X:15749031' f[A,G] = [0.1940024,0.8059975] vs [0.4362,0.5638], chisq 717.8926
## Mismatched frequencies for 'X:15753266' f[G,A] = [0.0122399,0.9877601] vs [0.2875,0.7125], chisq 1162.549
## Mismatched frequencies for 'X:15790333' f[A,G] = [0.5067319,0.493268] vs [0.6639,0.3361], chisq 322.1895
## Mismatched frequencies for 'X:15860834' f[T,C] = [0.2766218,0.7233782] vs [0.4612,0.5388], chisq 409.7076
## Mismatched frequencies for 'X:16042662' f[C,T] = [0.1603427,0.8396573] vs [0.3935,0.6065], chisq 690.7869
## Mismatched frequencies for 'X:16048056' f[G,T] = [0.04528764,0.9547124] vs [0.3128,0.6872], chisq 1035.491
## Mismatched frequencies for 'X:16048548' f[A,G] = [0.01713586,0.9828641] vs [0.2923,0.7077], chisq 1148.312
## Mismatched frequencies for 'X:16172365' f[G,C] = [0.4314565,0.5685434] vs [0.5963,0.4037], chisq 331.4766
## Mismatched frequencies for 'X:16404153' f[T,C] = [0.06364749,0.9363525] vs [0.3201,0.6799], chisq 935.9075
## Mismatched frequencies for 'X:16451997' f[A,G] = [0.5361077,0.4638923] vs [0.6957,0.3043], chisq 348.1746
## Mismatched frequencies for 'X:16608793' f[G,A] = [0.04528764,0.9547124] vs [0.31,0.69], chisq 1019.31
## Mismatched frequencies for 'X:16667224' f[C,T] = [0.04528764,0.9547124] vs [0.3168,0.6832], chisq 1058.819
## Mismatched frequencies for 'X:16771043' f[A,G] = [0.1560588,0.8439413] vs [0.3822,0.6178], chisq 657.8298
## Mismatched frequencies for 'X:16914085' f[G,A] = [0.1921665,0.8078336] vs [0.4037,0.5963], chisq 561.4731
## Mismatched frequencies for 'X:16951552' f[C,T] = [0.06609547,0.9339045] vs [0.3235,0.6765], chisq 936.8681
## Mismatched frequencies for 'X:16995148' f[G,A] = [0.2019584,0.7980416] vs [0.4113,0.5887], chisq 545.8758
## Mismatched frequencies for 'X:17098454' f[C,T] = [0.1933905,0.8066096] vs [0.4113,0.5887], chisq 591.8945
## Mismatched frequencies for 'X:17146291' f[C,G] = [0.1976744,0.8023256] vs [0.4103,0.5897], chisq 563.8039
## Mismatched frequencies for 'X:17319018' f[C,G] = [0.1762546,0.8237454] vs [0.3997,0.6003], chisq 629.6901
## Mismatched frequencies for 'X:17523998' f[A,G] = [0.1995104,0.8004896] vs [0.4138,0.5862], chisq 570.9375
## Mismatched frequencies for 'X:17529332' f[A,G] = [0.2858017,0.7141983] vs [0.4752,0.5248], chisq 429.0807
## Mismatched frequencies for 'X:17574893' f[G,A] = [0.08017136,0.9198287] vs [0.3281,0.6719], chisq 860.3219
## Mismatched frequencies for 'X:17902830' f[T,C] = [0.06425948,0.9357405] vs [0.3186,0.6814], chisq 922.9142
## Mismatched frequencies for 'X:18152685' f[A,G] = [0.3219094,0.6780906] vs [0.5216,0.4784], chisq 473.6185
## Mismatched frequencies for 'X:18212905' f[A,G] = [0.3096695,0.6903305] vs [0.5143,0.4857], chisq 497.3573
## Mismatched frequencies for 'X:18322666' f[A,G] = [0.3586291,0.6413709] vs [0.5448,0.4552], chisq 412.9143
## Mismatched frequencies for 'X:18419750' f[G,A] = [0.08996328,0.9100367] vs [0.3522,0.6478], chisq 926.0379
## Mismatched frequencies for 'X:18671795' f[A,G] = [0.2937576,0.7062423] vs [0.5124,0.4876], chisq 567.8883
## Mismatched frequencies for 'X:18673707' f[C,T] = [0.2925337,0.7074664] vs [0.5051,0.4949], chisq 537.0817
## Mismatched frequencies for 'X:18683522' f[T,C] = [0.4057527,0.5942472] vs [0.5808,0.4192], chisq 370.1344
## Mismatched frequencies for 'X:18739086' f[G,C] = [0.4443085,0.5556915] vs [0.6115,0.3885], chisq 344.7533
## Mismatched frequencies for 'X:18824274' f[A,G] = [0.2974296,0.7025704] vs [0.5186,0.4814], chisq 580.9684
## Mismatched frequencies for 'X:18824794' f[T,G] = [0.2974296,0.7025704] vs [0.5183,0.4817], chisq 579.3957
## Mismatched frequencies for 'X:18828563' f[G,T] = [0.4375765,0.5624235] vs [0.6232,0.3768], chisq 428.5667
## Mismatched frequencies for 'X:18846999' f[T,G] = [0.2337821,0.7662179] vs [0.4675,0.5325], chisq 656.3703
## Mismatched frequencies for 'X:18863779' f[C,G] = [0.2998776,0.7001224] vs [0.4974,0.5026], chisq 464.1614
## Mismatched frequencies for 'X:18870942' f[G,A] = [0.2634639,0.7365361] vs [0.4678,0.5322], chisq 501.0787
## Mismatched frequencies for 'X:18874926' f[T,C] = [0.1578947,0.8421053] vs [0.3993,0.6007], chisq 736.5391
## Mismatched frequencies for 'X:18879795' f[A,G] = [0.1413709,0.8586291] vs [0.4098,0.5902], chisq 903.3385
## Mismatched frequencies for 'X:18885944' f[T,G] = [0.2050184,0.7949817] vs [0.4525,0.5475], chisq 742.0089
## Mismatched frequencies for 'X:19066812' f[A,C] = [0.3396573,0.6603427] vs [0.5267,0.4733], chisq 415.6576
## Mismatched frequencies for 'X:19069714' f[T,C] = [0.2925337,0.7074664] vs [0.4976,0.5024], chisq 500.335
## Mismatched frequencies for 'X:19122321' f[A,G] = [0.04406365,0.9559364] vs [0.308,0.692], chisq 1017.48
## Mismatched frequencies for 'X:19464848' f[A,G] = [0.1441248,0.8558751] vs [0.3799,0.6201], chisq 717.8437
## Mismatched frequencies for 'X:19467933' f[T,C] = [0.8870869,0.1129131] vs [0.9798,0.0202], chisq 916.2297
## Mismatched frequencies for 'X:19477177' f[C,T] = [0.1034272,0.8965728] vs [0.3651,0.6349], chisq 904.4949
## Mismatched frequencies for 'X:19482476' f[C,T] = [0.1101591,0.8898409] vs [0.3682,0.6318], chisq 875.3608
## Mismatched frequencies for 'X:19484274' f[T,C] = [0.1040392,0.8959608] vs [0.3567,0.6433], chisq 852.6123
## Mismatched frequencies for 'X:19504273' f[C,A] = [0.127907,0.872093] vs [0.3781,0.6219], chisq 811.474
## Mismatched frequencies for 'X:19523404' f[C,T] = [0.1175031,0.8824969] vs [0.3577,0.6423], chisq 768.1228
## Mismatched frequencies for 'X:20101049' f[G,A] = [0.1450428,0.8549572] vs [0.3615,0.6385], chisq 618.451
## Mismatched frequencies for 'X:20409842' f[G,A] = [0.02876377,0.9712362] vs [0.296,0.704], chisq 1071.919
## Mismatched frequencies for 'X:20421419' f[C,T] = [0.05324357,0.9467564] vs [0.3108,0.6892], chisq 962.0182
## Mismatched frequencies for 'X:20465043' f[A,G] = [0.05936353,0.9406365] vs [0.3191,0.6809], chisq 962.4775
## Mismatched frequencies for 'X:20582924' f[C,T] = [0.02815178,0.9718482] vs [0.3001,0.6999], chisq 1100.8
## Mismatched frequencies for 'X:20886077' f[G,A] = [0.01040392,0.9895961] vs [0.2822,0.7178], chisq 1147.668
## Mismatched frequencies for 'X:21092652' f[A,G] = [0.2662179,0.7337821] vs [0.465,0.535], chisq 474.667
## Mismatched frequencies for 'X:21099757' f[T,C] = [0.001835985,0.998164] vs [0.2944,0.7056], chisq 1296.561
## Mismatched frequencies for 'X:21486834' f[T,G] = [0.06425948,0.9357405] vs [0.3211,0.6789], chisq 936.9841
## Mismatched frequencies for 'X:21633210' f[A,G] = [0.02937577,0.9706242] vs [0.2963,0.7037], chisq 1068.608
## Mismatched frequencies for 'X:21694673' f[A,G] = [0.06609547,0.9339045] vs [0.3291,0.6709], chisq 968.8041
## Mismatched frequencies for 'X:21766559' f[G,A] = [0.02815178,0.9718482] vs [0.297,0.703], chisq 1082.762
## Mismatched frequencies for 'X:22002856' f[G,A] = [0.1162791,0.8837209] vs [0.3568,0.6432], chisq 771.2557
## Mismatched frequencies for 'X:22004183' f[G,C] = [0.2864137,0.7135863] vs [0.4825,0.5175], chisq 458.96
## Mismatched frequencies for 'X:22007752' f[A,G] = [0.4455324,0.5544676] vs [0.6096,0.3904], chisq 331.566
## Mismatched frequencies for 'X:22036245' f[G,A] = [0.3549572,0.6450428] vs [0.5376,0.4624], chisq 396.8797
## Mismatched frequencies for 'X:22081875' f[T,G] = [0.24541,0.75459] vs [0.4441,0.5559], chisq 479.383
## Mismatched frequencies for 'X:22147968' f[C,A] = [0.3298654,0.6701347] vs [0.5135,0.4865], chisq 400.518
## Mismatched frequencies for 'X:22148051' f[C,T] = [0.3292534,0.6707466] vs [0.514,0.486], chisq 405.3794
## Mismatched frequencies for 'X:22162402' f[T,C] = [0.3880049,0.6119951] vs [0.5716,0.4284], chisq 405.1975
## Mismatched frequencies for 'X:22177027' f[G,A] = [0.3996328,0.6003672] vs [0.5775,0.4225], chisq 381.4601
## Mismatched frequencies for 'X:22273467' f[G,A] = [0.3831089,0.6168911] vs [0.5512,0.4488], chisq 337.3022
## Mismatched frequencies for 'X:22307083' f[C,T] = [0.3255814,0.6744186] vs [0.5102,0.4898], chisq 404.8765
## Mismatched frequencies for 'X:22448964' f[C,T] = [0.1603427,0.8396573] vs [0.4,0.6], chisq 725.2618
## Mismatched frequencies for 'X:22540197' f[A,G] = [0.04283966,0.9571603] vs [0.3018,0.6982], chisq 991.7532
## Mismatched frequencies for 'X:22648403' f[A,C] = [0.2845777,0.7154223] vs [0.4565,0.5435], chisq 356.0361
## Mismatched frequencies for 'X:22694412' f[C,A] = [0.3212974,0.6787026] vs [0.5066,0.4934], chisq 407.9838
## Mismatched frequencies for 'X:22752561' f[A,G] = [0.06793146,0.9320685] vs [0.3361,0.6639], chisq 995.4704
## Mismatched frequencies for 'X:22760691' f[T,C] = [0.3304774,0.6695226] vs [0.5359,0.4641], chisq 501.7644
## Mismatched frequencies for 'X:22766721' f[C,A] = [0.1401469,0.8598531] vs [0.38,0.62], chisq 743.1403
## Mismatched frequencies for 'X:22787014' f[G,T] = [0.2919217,0.7080783] vs [0.4917,0.5083], chisq 475.3558
## Mismatched frequencies for 'X:22803131' f[A,G] = [0.3684211,0.6315789] vs [0.5584,0.4416], chisq 431.558
## Mismatched frequencies for 'X:22807950' f[C,T] = [0.1940024,0.8059975] vs [0.4133,0.5867], chisq 598.4451
## Mismatched frequencies for 'X:22817683' f[C,T] = [0.2184823,0.7815177] vs [0.4285,0.5715], chisq 541.6751
## Mismatched frequencies for 'X:22838097' f[G,T] = [0.3518972,0.6481028] vs [0.5294,0.4706], chisq 374.4604
## Mismatched frequencies for 'X:22852105' f[C,G] = [0.3433292,0.6566707] vs [0.5207,0.4793], chisq 373.674
## Mismatched frequencies for 'X:22856079' f[A,G] = [0.244798,0.7552019] vs [0.4563,0.5437], chisq 539.8612
## Mismatched frequencies for 'X:22862268' f[T,C] = [0.09057528,0.9094247] vs [0.338,0.662], chisq 841.8612
## Mismatched frequencies for 'X:22883547' f[A,G] = [0.03610771,0.9638923] vs [0.3066,0.6934], chisq 1073.239
## Mismatched frequencies for 'X:22892077' f[A,G] = [0.3225214,0.6774786] vs [0.5093,0.4907], chisq 414.4321
## Mismatched frequencies for 'X:22914644' f[C,G] = [0.1560588,0.8439413] vs [0.4007,0.5993], chisq 755.5497
## Mismatched frequencies for 'X:22927485' f[T,C] = [0.2197062,0.7802938] vs [0.4552,0.5448], chisq 670.4479
## Mismatched frequencies for 'X:23007778' f[G,A] = [0.1585067,0.8414932] vs [0.4031,0.5969], chisq 753.3979
## Mismatched frequencies for 'X:23145797' f[T,C] = [0.3684211,0.6315789] vs [0.5508,0.4492], chisq 396.8906
## Mismatched frequencies for 'X:23150292' f[G,A] = [0.2411261,0.7588739] vs [0.4282,0.5718], chisq 429.2139
## Mismatched frequencies for 'X:23230309' f[A,G] = [0.372705,0.627295] vs [0.5396,0.4604], chisq 331.5973
## Mismatched frequencies for 'X:23294920' f[T,C] = [0.2723378,0.7276622] vs [0.4867,0.5133], chisq 548.1192
## Mismatched frequencies for 'X:23299480' f[T,C] = [0.3488372,0.6511628] vs [0.5628,0.4372], chisq 547.81
## Mismatched frequencies for 'X:23301489' f[G,T] = [0.0746634,0.9253366] vs [0.3494,0.6506], chisq 1022.78
## Mismatched frequencies for 'X:23307761' f[T,G] = [0.1334149,0.8665851] vs [0.3862,0.6138], chisq 820.4411
## Mismatched frequencies for 'X:23312332' f[T,C] = [0.4412485,0.5587515] vs [0.6087,0.3913], chisq 345.059
## Mismatched frequencies for 'X:23313842' f[T,C] = [0.1762546,0.8237454] vs [0.4126,0.5874], chisq 696.529
## Mismatched frequencies for 'X:23320121' f[T,C] = [0.126071,0.873929] vs [0.3591,0.6409], chisq 720.7934
## Mismatched frequencies for 'X:23322621' f[C,A] = [0.3574051,0.6425949] vs [0.5238,0.4762], chisq 328.9288
## Mismatched frequencies for 'X:23333838' f[C,G] = [0.3164015,0.6835985] vs [0.5144,0.4856], chisq 465.631
## Mismatched frequencies for 'X:23342599' f[C,T] = [0.09057528,0.9094247] vs [0.331,0.669], chisq 803.7931
## Mismatched frequencies for 'X:23374991' f[C,G] = [0.1713586,0.8286414] vs [0.3969,0.6031], chisq 643.5579
## Mismatched frequencies for 'X:23383193' f[C,T] = [0.2747858,0.7252142] vs [0.4828,0.5172], chisq 516.6129
## Mismatched frequencies for 'X:23384395' f[C,G] = [0.243574,0.756426] vs [0.4563,0.5437], chisq 546.1591
## Mismatched frequencies for 'X:23388671' f[G,A] = [0.4210526,0.5789474] vs [0.5835,0.4165], chisq 319.4357
## Mismatched frequencies for 'X:23391183' f[G,A] = [0.1554467,0.8445532] vs [0.3923,0.6077], chisq 714.0699
## Mismatched frequencies for 'X:23398214' f[T,C] = [0.3965728,0.6034272] vs [0.5552,0.4448], chisq 300.8401
## Mismatched frequencies for 'X:23525464' f[A,G] = [0.3384333,0.6615667] vs [0.5073,0.4927], chisq 338.7641
## Mismatched frequencies for 'X:23566531' f[T,G] = [0.4039168,0.5960832] vs [0.5648,0.4352], chisq 310.5246
## Mismatched frequencies for 'X:23635211' f[T,C] = [0.05079559,0.9492044] vs [0.3119,0.6881], chisq 987.1172
## Mismatched frequencies for 'X:23673484' f[C,T] = [0.1450428,0.8549572] vs [0.3772,0.6228], chisq 698.0369
## Mismatched frequencies for 'X:23676892' f[T,C] = [0.09424724,0.9057528] vs [0.348,0.652], chisq 871.786
## Mismatched frequencies for 'X:23710831' f[T,C] = [0.0875153,0.9124847] vs [0.3399,0.6601], chisq 873.7992
## Mismatched frequencies for 'X:23729668' f[A,G] = [0.01101591,0.9889841] vs [0.2907,0.7093], chisq 1192.081
## Mismatched frequencies for 'X:23737430' f[G,A] = [0.1848225,0.8151775] vs [0.4207,0.5793], chisq 688.8299
## Mismatched frequencies for 'X:23788151' f[C,T] = [0.376989,0.623011] vs [0.5363,0.4637], chisq 302
## Mismatched frequencies for 'X:23799738' f[A,C] = [0.2056304,0.7943696] vs [0.4451,0.5549], chisq 697.5311
## Mismatched frequencies for 'X:23800039' f[A,G] = [0.2056304,0.7943696] vs [0.4476,0.5524], chisq 711.1698
## Mismatched frequencies for 'X:23902490' f[A,G] = [0.1799266,0.8200734] vs [0.4079,0.5921], chisq 650.4426
## Mismatched frequencies for 'X:23928489' f[C,T] = [0.2845777,0.7154223] vs [0.5061,0.4939], chisq 583.2801
## Mismatched frequencies for 'X:23944707' f[T,C] = [0.1805385,0.8194615] vs [0.4083,0.5917], chisq 648.9749
## Mismatched frequencies for 'X:23962643' f[C,T] = [0.2851897,0.7148102] vs [0.5094,0.4906], chisq 597.3369
## Mismatched frequencies for 'X:24088952' f[G,A] = [0.2986536,0.7013464] vs [0.5192,0.4808], chisq 577.6909
## Mismatched frequencies for 'X:24110148' f[G,T] = [0.2888617,0.7111383] vs [0.5052,0.4948], chisq 556.3276
## Mismatched frequencies for 'X:24140982' f[T,C] = [0.2582619,0.7417381] vs [0.4905,0.5095], chisq 642.9913
## Mismatched frequencies for 'X:24146722' f[A,C] = [0.3886169,0.6113831] vs [0.5524,0.4476], chisq 320.3849
## Mismatched frequencies for 'X:24209009' f[C,T] = [0.08384333,0.9161567] vs [0.3384,0.6616], chisq 891.4783
## Mismatched frequencies for 'X:24261585' f[T,C] = [0.03182375,0.9681762] vs [0.3046,0.6954], chisq 1096.687
## Mismatched frequencies for 'X:24268705' f[T,C] = [0.03059975,0.9694002] vs [0.3024,0.6976], chisq 1093.928
## Mismatched frequencies for 'X:24443147' f[A,G] = [0.06181151,0.9381885] vs [0.3277,0.6723], chisq 993.2196
## Mismatched frequencies for 'X:24453056' f[G,A] = [0.006731946,0.9932681] vs [0.9605,0.0395], chisq 24408.08
## Mismatched frequencies for 'X:24501753' f[T,C] = [0.03794369,0.9620563] vs [0.3015,0.6985], chisq 1028.909
## Mismatched frequencies for 'X:24578306' f[G,A] = [0.373317,0.626683] vs [0.5442,0.4558], chisq 347.9465
## Mismatched frequencies for 'X:24578803' f[C,T] = [0.3555692,0.6444308] vs [0.5446,0.4554], chisq 425.6548
## Mismatched frequencies for 'X:24613189' f[C,T] = [0.4033048,0.5966952] vs [0.5776,0.4224], chisq 366.3708
## Mismatched frequencies for 'X:24656775' f[A,G] = [0.4069767,0.5930232] vs [0.5804,0.4196], chisq 363.2504
## Mismatched frequencies for 'X:24664570' f[A,G] = [0.9449204,0.05507956] vs [0.9876,0.0124], chisq 337.2495
## Mismatched frequencies for 'X:24985875' f[T,C] = [0.2184823,0.7815177] vs [0.4406,0.5594], chisq 601.2305
## Mismatched frequencies for 'X:25016033' f[G,A] = [0.05997552,0.9400245] vs [0.3178,0.6822], chisq 950.4683
## Mismatched frequencies for 'X:25093379' f[G,A] = [0.06609547,0.9339045] vs [0.3165,0.6835], chisq 897.6558
## Mismatched frequencies for 'X:25276610' f[A,G] = [0.0257038,0.9742962] vs [0.2927,0.7073], chisq 1078.216
## Mismatched frequencies for 'X:25706324' f[C,T] = [0.2711138,0.7288862] vs [0.4599,0.5401], chisq 428.9323
## Mismatched frequencies for 'X:25717046' f[A,G] = [0.3451652,0.6548348] vs [0.5109,0.4891], chisq 326.2517
## Mismatched frequencies for 'X:25725344' f[T,C] = [0.2949816,0.7050183] vs [0.5148,0.4852], chisq 573.9458
## Mismatched frequencies for 'X:25751456' f[C,A] = [0.3286414,0.6713586] vs [0.532,0.468], chisq 491.5091
## Mismatched frequencies for 'X:25774782' f[C,T] = [0.2221542,0.7778458] vs [0.4636,0.5364], chisq 701.9642
## Mismatched frequencies for 'X:25778163' f[G,T] = [0.1627907,0.8372093] vs [0.4101,0.5899], chisq 765.1441
## Mismatched frequencies for 'X:25805515' f[T,C] = [0.5189719,0.4810281] vs [0.673,0.327], chisq 313.4313
## Mismatched frequencies for 'X:26429860' f[A,G] = [0.246634,0.753366] vs [0.4503,0.5497], chisq 502.0154
## Mismatched frequencies for 'X:26946350' f[G,A] = [0.1560588,0.8439413] vs [0.3855,0.6145], chisq 674.7678
## Mismatched frequencies for 'X:27026630' f[G,A] = [0.4712362,0.5287638] vs [0.6386,0.3614], chisq 354.2112
## Mismatched frequencies for 'X:27029028' f[T,C] = [0.131579,0.8684211] vs [0.3715,0.6285], chisq 751.6946
## Mismatched frequencies for 'X:27109578' f[A,G] = [0.244798,0.7552019] vs [0.4508,0.5492], chisq 513.5157
## Mismatched frequencies for 'X:27110222' f[C,A] = [0.0257038,0.9742962] vs [0.2956,0.7044], chisq 1094.994
## Mismatched frequencies for 'X:27190319' f[C,T] = [0.2839657,0.7160343] vs [0.4858,0.5142], chisq 485.8929
## Mismatched frequencies for 'X:27237909' f[C,T] = [0.2833538,0.7166463] vs [0.4851,0.5149], chisq 485.5581
## Mismatched frequencies for 'X:27409225' f[G,A] = [0.9473684,0.05263158] vs [0.9911,0.0089], chisq 445.9726
## Mismatched frequencies for 'X:27459852' f[T,C] = [0.2931457,0.7068543] vs [0.489,0.511], chisq 457.1039
## Mismatched frequencies for 'X:27494664' f[C,T] = [0.1652387,0.8347613] vs [0.4075,0.5925], chisq 735.7333
## Mismatched frequencies for 'X:27512043' f[G,A] = [0.3059976,0.6940025] vs [0.5223,0.4777], chisq 555.6842
## Mismatched frequencies for 'X:27524625' f[C,G] = [0.3102815,0.6897185] vs [0.5258,0.4742], chisq 551.7312
## Mismatched frequencies for 'X:27563413' f[A,G] = [0.03855569,0.9614443] vs [0.314,0.686], chisq 1096.735
## Mismatched frequencies for 'X:27577924' f[T,C] = [0.1658507,0.8341493] vs [0.4027,0.5973], chisq 706.2273
## Mismatched frequencies for 'X:27579602' f[T,C] = [0.4388005,0.5611995] vs [0.603,0.397], chisq 330.4445
## Mismatched frequencies for 'X:27825703' f[G,A] = [0.4871481,0.5128519] vs [0.6548,0.3452], chisq 361.9838
## Mismatched frequencies for 'X:27839572' f[T,C] = [0.4620563,0.5379437] vs [0.6275,0.3725], chisq 342.3764
## Mismatched frequencies for 'X:27839617' f[G,A] = [0.4871481,0.5128519] vs [0.655,0.345], chisq 362.9278
## Mismatched frequencies for 'X:27844643' f[T,G] = [0.4602203,0.5397797] vs [0.6241,0.3759], chisq 334.9158
## Mismatched frequencies for 'X:27854625' f[C,G] = [0.04161567,0.9583843] vs [0.3024,0.6976], chisq 1004.812
## Mismatched frequencies for 'X:28084744' f[G,T] = [0.05507956,0.9449204] vs [0.3198,0.6802], chisq 999.2892
## Mismatched frequencies for 'X:28194472' f[G,A] = [0.3629131,0.6370869] vs [0.5447,0.4553], chisq 393.7231
## Mismatched frequencies for 'X:28233053' f[G,A] = [0.2680539,0.7319462] vs [0.4664,0.5336], chisq 472.2988
## Mismatched frequencies for 'X:28378212' f[C,T] = [0.2594859,0.7405141] vs [0.4606,0.5394], chisq 486.8778
## Mismatched frequencies for 'X:28433309' f[C,T] = [0.3059976,0.6940025] vs [0.4838,0.5162], chisq 377.0541
## Mismatched frequencies for 'X:28455235' f[A,C] = [0.3470012,0.6529988] vs [0.5374,0.4626], chisq 431.2381
## Mismatched frequencies for 'X:28529453' f[T,C] = [0.2656059,0.7343941] vs [0.4824,0.5176], chisq 561.3439
## Mismatched frequencies for 'X:28543247' f[A,G] = [0.04161567,0.9583843] vs [0.3071,0.6929], chisq 1031.741
## Mismatched frequencies for 'X:28561647' f[C,T] = [0.2747858,0.7252142] vs [0.5033,0.4967], chisq 620.953
## Mismatched frequencies for 'X:28647631' f[C,T] = [0.2197062,0.7802938] vs [0.4357,0.5643], chisq 570.198
## Mismatched frequencies for 'X:28841156' f[T,C] = [0.0630355,0.9369645] vs [0.3304,0.6696], chisq 999.538
## Mismatched frequencies for 'X:28871086' f[C,G] = [0.3310894,0.6689106] vs [0.5175,0.4825], chisq 412.7015
## Mismatched frequencies for 'X:29033630' f[A,G] = [0.05263158,0.9473684] vs [0.3154,0.6846], chisq 992.921
## Mismatched frequencies for 'X:29079243' f[T,C] = [0.02937577,0.9706242] vs [0.297,0.703], chisq 1072.65
## Mismatched frequencies for 'X:29167809' f[A,G] = [0.3188494,0.6811506] vs [0.5405,0.4595], chisq 584.4445
## Mismatched frequencies for 'X:29182769' f[T,C] = [0.130355,0.8696451] vs [0.3793,0.6207], chisq 802.0725
## Mismatched frequencies for 'X:29199951' f[G,A] = [0.4235006,0.5764994] vs [0.6172,0.3828], chisq 463.9748
## Mismatched frequencies for 'X:29201607' f[G,A] = [0.4847001,0.5152999] vs [0.6671,0.3329], chisq 434.4534
## Mismatched frequencies for 'X:29218702' f[T,C] = [0.1364749,0.8635251] vs [0.425,0.575], chisq 1031.085
## Mismatched frequencies for 'X:29245608' f[A,C] = [0.3941248,0.6058751] vs [0.5997,0.4003], chisq 515.4146
## Mismatched frequencies for 'X:29245919' f[A,C] = [0.3359853,0.6640147] vs [0.5263,0.4737], chisq 430.3049
## Mismatched frequencies for 'X:29253167' f[C,T] = [0.4577723,0.5422277] vs [0.6364,0.3636], chisq 402.1475
## Mismatched frequencies for 'X:29276212' f[A,C] = [0.3219094,0.6780906] vs [0.5105,0.4895], chisq 422.4868
## Mismatched frequencies for 'X:29315217' f[G,A] = [0.4094247,0.5905753] vs [0.5676,0.4324], chisq 300.5412
## Mismatched frequencies for 'X:29358843' f[C,G] = [0.4418605,0.5581396] vs [0.6132,0.3868], chisq 362.4573
## Mismatched frequencies for 'X:29373791' f[G,A] = [0.5287638,0.4712362] vs [0.6821,0.3179], chisq 314.8188
## Mismatched frequencies for 'X:29377273' f[A,C] = [0.4137087,0.5862913] vs [0.5982,0.4018], chisq 415.2323
## Mismatched frequencies for 'X:29406962' f[T,G] = [0.3506732,0.6493268] vs [0.5454,0.4546], chisq 451.721
## Mismatched frequencies for 'X:29573719' f[A,C] = [0.4363525,0.5636475] vs [0.6149,0.3851], chisq 393.9289
## Mismatched frequencies for 'X:29656527' f[C,T] = [0.004895961,0.995104] vs [0.2838,0.7162], chisq 1205.578
## Mismatched frequencies for 'X:29830159' f[C,T] = [0.4210526,0.5789474] vs [0.6,0.4], chisq 391.2638
## Mismatched frequencies for 'X:29903337' f[T,C] = [0.1762546,0.8237454] vs [0.4167,0.5833], chisq 718.496
## Mismatched frequencies for 'X:29934702' f[G,A] = [0.01040392,0.9895961] vs [0.2928,0.7072], chisq 1209.93
## Mismatched frequencies for 'X:30139299' f[T,C] = [0.369645,0.6303549] vs [0.5374,0.4626], chisq 334.8814
## Mismatched frequencies for 'X:30254361' f[G,A] = [0.5140759,0.4859241] vs [0.6727,0.3273], chisq 332.0774
## Mismatched frequencies for 'X:30254376' f[T,C] = [0.08935128,0.9106487] vs [0.3547,0.6453], chisq 944.9067
## Mismatched frequencies for 'X:30254530' f[A,G] = [0.5146879,0.4853121] vs [0.6726,0.3274], chisq 329.087
## Mismatched frequencies for 'X:30261158' f[G,C] = [0.08996328,0.9100367] vs [0.3547,0.6453], chisq 940.4724
## Mismatched frequencies for 'X:30283575' f[A,G] = [0.08935128,0.9106487] vs [0.3547,0.6453], chisq 944.9067
## Mismatched frequencies for 'X:30286957' f[A,G] = [0.5189719,0.4810281] vs [0.6735,0.3265], chisq 315.6726
## Mismatched frequencies for 'X:30304131' f[C,T] = [0.03121175,0.9687883] vs [0.3116,0.6884], chisq 1143.209
## Mismatched frequencies for 'X:30318173' f[C,G] = [0.02876377,0.9712362] vs [0.3094,0.6906], chisq 1150.621
## Mismatched frequencies for 'X:30331349' f[A,G] = [0.1542228,0.8457772] vs [0.3771,0.6229], chisq 642.7444
## Mismatched frequencies for 'X:30339327' f[T,C] = [0.3145655,0.6854345] vs [0.493,0.507], chisq 378.9633
## Mismatched frequencies for 'X:30406849' f[A,G] = [0.07221542,0.9277846] vs [0.3462,0.6538], chisq 1022.368
## Mismatched frequencies for 'X:30411673' f[T,C] = [0.2723378,0.7276622] vs [0.4718,0.5282], chisq 476.6263
## Mismatched frequencies for 'X:30568572' f[C,T] = [0.1958384,0.8041616] vs [0.4201,0.5799], chisq 622.4152
## Mismatched frequencies for 'X:30577846' f[A,C] = [0.25459,0.74541] vs [0.4493,0.5507], chisq 458.8816
## Mismatched frequencies for 'X:30721628' f[G,A] = [0.3176255,0.6823745] vs [0.5115,0.4885], chisq 446.4811
## Mismatched frequencies for 'X:30782994' f[T,G] = [0.369645,0.6303549] vs [0.5457,0.4543], chisq 369.4158
## Mismatched frequencies for 'X:30917669' f[G,T] = [0.1175031,0.8824969] vs [0.3587,0.6413], chisq 773.4994
## Mismatched frequencies for 'X:30949584' f[A,G] = [0.4112607,0.5887393] vs [0.5789,0.4211], chisq 339.2527
## Mismatched frequencies for 'X:30954662' f[C,T] = [0.1750306,0.8249694] vs [0.4042,0.5958], chisq 659.7185
## Mismatched frequencies for 'X:30970424' f[C,T] = [0.3574051,0.6425949] vs [0.5339,0.4661], chisq 370.4303
## Mismatched frequencies for 'X:30975535' f[A,G] = [0.1624847,0.8375153] vs [0.3975,0.6025], chisq 698.9555
## Mismatched frequencies for 'X:30980669' f[T,G] = [0.1946144,0.8053855] vs [0.4436,0.5564], chisq 755.2124
## Mismatched frequencies for 'X:30984665' f[G,A] = [0.5783353,0.4216646] vs [0.7271,0.2729], chisq 321.4487
## Mismatched frequencies for 'X:30993057' f[T,C] = [0.5410036,0.4589963] vs [0.7024,0.2976], chisq 360.0857
## Mismatched frequencies for 'X:30999375' f[G,T] = [0.1429008,0.8570991] vs [0.3895,0.6105], chisq 777.2707
## Mismatched frequencies for 'X:31015674' f[G,A] = [0.2943696,0.7056304] vs [0.5015,0.4985], chisq 510.1646
## Mismatched frequencies for 'X:31020702' f[C,T] = [0.1995104,0.8004896] vs [0.4321,0.5679], chisq 663.6078
## Mismatched frequencies for 'X:31156285' f[T,C] = [0.09914321,0.9008568] vs [0.3813,0.6187], chisq 1031.7
## Mismatched frequencies for 'X:31162781' f[G,T] = [0.1578947,0.8421053] vs [0.4076,0.5924], chisq 782.0821
## Mismatched frequencies for 'X:31199539' f[G,A] = [0.4039168,0.5960832] vs [0.5828,0.4172], chisq 386.8752
## Mismatched frequencies for 'X:31211220' f[C,T] = [0.1750306,0.8249694] vs [0.3928,0.6072], chisq 602.1503
## Mismatched frequencies for 'X:31215747' f[A,C] = [0.370257,0.629743] vs [0.5414,0.4586], chisq 348.7911
## Mismatched frequencies for 'X:31224684' f[A,G] = [0.1119951,0.8880049] vs [0.361,0.639], chisq 822.4899
## Mismatched frequencies for 'X:31226314' f[A,G] = [0.01897185,0.9810281] vs [0.2914,0.7086], chisq 1127.335
## Mismatched frequencies for 'X:31231672' f[C,T] = [0.07160342,0.9283966] vs [0.3325,0.6675], chisq 947.1356
## Mismatched frequencies for 'X:31232814' f[T,C] = [0.02019584,0.9798042] vs [0.2916,0.7084], chisq 1118.092
## Mismatched frequencies for 'X:31237433' f[C,T] = [0.2197062,0.7802938] vs [0.4243,0.5757], chisq 515.5195
## Mismatched frequencies for 'X:31311680' f[G,A] = [0.2282742,0.7717258] vs [0.412,0.588], chisq 419.3204
## Mismatched frequencies for 'X:31320892' f[C,T] = [0.07221542,0.9277846] vs [0.3349,0.6651], chisq 956.3486
## Mismatched frequencies for 'X:31437805' f[C,T] = [0.07588739,0.9241126] vs [0.3271,0.6729], chisq 885.3824
## Mismatched frequencies for 'X:31457752' f[A,C] = [0.370257,0.629743] vs [0.5675,0.4325], chisq 466.6253
## Mismatched frequencies for 'X:31496350' f[C,T] = [0.05875153,0.9412485] vs [0.3218,0.6782], chisq 982.5745
## Mismatched frequencies for 'X:31511939' f[C,T] = [0.05201959,0.9479804] vs [0.316,0.684], chisq 1001.113
## Mismatched frequencies for 'X:31620288' f[C,T] = [0.06548347,0.9345166] vs [0.3217,0.6783], chisq 931.2538
## Mismatched frequencies for 'X:31710873' f[G,C] = [0.01529988,0.9847001] vs [0.2876,0.7124], chisq 1136.647
## Mismatched frequencies for 'X:31774258' f[G,T] = [0.3470012,0.6529988] vs [0.5194,0.4806], chisq 353.0087
## Mismatched frequencies for 'X:31896408' f[C,T] = [0.1089351,0.8910649] vs [0.3576,0.6424], chisq 824.3008
## Mismatched frequencies for 'X:32009476' f[A,G] = [0.3953488,0.6046512] vs [0.5653,0.4347], chisq 346.4694
## Mismatched frequencies for 'X:32020257' f[C,T] = [0.2050184,0.7949817] vs [0.4279,0.5721], chisq 610.8864
## Mismatched frequencies for 'X:32027155' f[C,T] = [0.1364749,0.8635251] vs [0.3817,0.6183], chisq 775.6481
## Mismatched frequencies for 'X:32032570' f[C,T] = [0.08261934,0.9173807] vs [0.3424,0.6576], chisq 922.927
## Mismatched frequencies for 'X:32036898' f[T,C] = [0.01101591,0.9889841] vs [0.2858,0.7142], chisq 1163.281
## Mismatched frequencies for 'X:32088576' f[T,C] = [0.2827417,0.7172583] vs [0.4976,0.5024], chisq 549.3429
## Mismatched frequencies for 'X:32110463' f[A,T] = [0.3035496,0.6964504] vs [0.5094,0.4906], chisq 503.4449
## Mismatched frequencies for 'X:32128015' f[C,T] = [0.370869,0.629131] vs [0.5439,0.4561], chisq 356.7085
## Mismatched frequencies for 'X:32129200' f[A,G] = [0.2056304,0.7943696] vs [0.4267,0.5733], chisq 601.4731
## Mismatched frequencies for 'X:32148441' f[C,T] = [0.1940024,0.8059975] vs [0.4134,0.5866], chisq 598.9425
## Mismatched frequencies for 'X:32179025' f[C,A] = [0.2723378,0.7276622] vs [0.4764,0.5236], chisq 498.1186
## Mismatched frequencies for 'X:32190697' f[G,T] = [0.373317,0.626683] vs [0.5415,0.4585], chisq 336.8566
## Mismatched frequencies for 'X:32195177' f[G,A] = [0.02998776,0.9700123] vs [0.3009,0.6991], chisq 1090.235
## Mismatched frequencies for 'X:32205011' f[G,A] = [0.09241126,0.9075887] vs [0.3414,0.6586], chisq 847.8572
## Mismatched frequencies for 'X:32205498' f[G,A] = [0.3938189,0.6061811] vs [0.5781,0.4219], chisq 409.47
## Mismatched frequencies for 'X:32206573' f[G,A] = [0.122399,0.877601] vs [0.3648,0.6352], chisq 774.5778
## Mismatched frequencies for 'X:32212759' f[A,G] = [0.2264382,0.7735618] vs [0.4562,0.5438], chisq 637.6885
## Mismatched frequencies for 'X:32213387' f[G,A] = [0.124847,0.875153] vs [0.3645,0.6355], chisq 757.1669
## Mismatched frequencies for 'X:32217186' f[T,C] = [0.4033048,0.5966952] vs [0.5832,0.4168], chisq 391.3301
## Mismatched frequencies for 'X:32227081' f[G,A] = [0.3941248,0.6058751] vs [0.5591,0.4409], chisq 325.7689
## Mismatched frequencies for 'X:32228675' f[G,A] = [0.09057528,0.9094247] vs [0.3424,0.6576], chisq 866.2116
## Mismatched frequencies for 'X:32231056' f[A,G] = [0.1150551,0.8849449] vs [0.3597,0.6403], chisq 794.9778
## Mismatched frequencies for 'X:32234477' f[C,T] = [0.1560588,0.8439413] vs [0.3823,0.6177], chisq 658.3401
## Mismatched frequencies for 'X:32274117' f[T,C] = [0.3072215,0.6927785] vs [0.4905,0.5095], chisq 400.0519
## Mismatched frequencies for 'X:32303121' f[A,G] = [0.4651163,0.5348837] vs [0.6212,0.3788], chisq 303.2073
## Mismatched frequencies for 'X:32315137' f[C,T] = [0.2968176,0.7031824] vs [0.4977,0.5023], chisq 480.0875
## Mismatched frequencies for 'X:32324466' f[C,T] = [0.4822521,0.5177479] vs [0.646,0.354], chisq 341.9342
## Mismatched frequencies for 'X:32325854' f[G,A] = [0.3806609,0.6193391] vs [0.5681,0.4319], chisq 421.6471
## Mismatched frequencies for 'X:32337111' f[T,C] = [0.3659731,0.6340269] vs [0.5573,0.4427], chisq 437.5295
## Mismatched frequencies for 'X:32359555' f[C,A] = [0.4210526,0.5789474] vs [0.5981,0.4019], chisq 382.5494
## Mismatched frequencies for 'X:32371245' f[A,G] = [0.2576499,0.74235] vs [0.4553,0.5447], chisq 471.3981
## Mismatched frequencies for 'X:32376945' f[G,A] = [0.4253366,0.5746634] vs [0.6026,0.3974], chisq 384.6757
## Mismatched frequencies for 'X:32397921' f[T,C] = [0.2845777,0.7154223] vs [0.4741,0.5259], chisq 429.8069
## Mismatched frequencies for 'X:32475164' f[G,A] = [0.3549572,0.6450428] vs [0.5252,0.4748], chisq 344.3444
## Mismatched frequencies for 'X:32484578' f[C,T] = [0.2698898,0.7301102] vs [0.4541,0.5459], chisq 409.4632
## Mismatched frequencies for 'X:32500485' f[A,G] = [0.2888617,0.7111383] vs [0.4808,0.5192], chisq 439.9163
## Mismatched frequencies for 'X:32503194' f[T,C] = [0.3470012,0.6529988] vs [0.5173,0.4827], chisq 344.447
## Mismatched frequencies for 'X:32528857' f[C,T] = [0.4271726,0.5728274] vs [0.5978,0.4022], chisq 355.3778
## Mismatched frequencies for 'X:32580579' f[C,T] = [0.3463892,0.6536108] vs [0.5205,0.4795], chisq 360.0657
## Mismatched frequencies for 'X:32605879' f[G,A] = [0.007955937,0.9920441] vs [0.9613,0.0387], chisq 24525.32
## Mismatched frequencies for 'X:32705004' f[G,A] = [0.2637699,0.7362301] vs [0.4657,0.5343], chisq 489.7335
## Mismatched frequencies for 'X:32828836' f[T,C] = [0.05813954,0.9418604] vs [0.3215,0.6785], chisq 985.5336
## Mismatched frequencies for 'X:32844070' f[C,T] = [0.4908201,0.50918] vs [0.6469,0.3531], chisq 311.2243
## Mismatched frequencies for 'X:32849544' f[A,G] = [0.4638923,0.5361077] vs [0.6273,0.3727], chisq 333.9972
## Mismatched frequencies for 'X:32859385' f[T,C] = [0.4681763,0.5318238] vs [0.6234,0.3766], chisq 300.4957
## Mismatched frequencies for 'X:32882441' f[G,A] = [0.1168911,0.8831089] vs [0.3588,0.6412], chisq 778.0331
## Mismatched frequencies for 'X:32889854' f[G,A] = [0.2980416,0.7019584] vs [0.4955,0.5045], chisq 464.013
## Mismatched frequencies for 'X:32929962' f[A,G] = [0.495104,0.504896] vs [0.6515,0.3485], chisq 314.1531
## Mismatched frequencies for 'X:32931528' f[A,G] = [0.4614443,0.5385557] vs [0.6214,0.3786], chisq 318.3933
## Mismatched frequencies for 'X:32932984' f[A,G] = [0.1921665,0.8078336] vs [0.4043,0.5957], chisq 564.3626
## Mismatched frequencies for 'X:33017099' f[A,G] = [0.01652387,0.9834762] vs [0.2869,0.7131], chisq 1122.083
## Mismatched frequencies for 'X:33055625' f[A,C] = [0.4100367,0.5899633] vs [0.5845,0.4155], chisq 368.4192
## Mismatched frequencies for 'X:33067359' f[C,T] = [0.4149327,0.5850673] vs [0.5823,0.4177], chisq 338.7688
## Mismatched frequencies for 'X:33139806' f[G,A] = [0.1370869,0.8629131] vs [0.3684,0.6316], chisq 700.8846
## Mismatched frequencies for 'X:33157071' f[A,G] = [0.127295,0.872705] vs [0.3577,0.6423], chisq 705.8439
## Mismatched frequencies for 'X:33206502' f[C,T] = [0.1866585,0.8133415] vs [0.426,0.574], chisq 706.3225
## Mismatched frequencies for 'X:33206634' f[T,C] = [0.03855569,0.9614443] vs [0.3004,0.6996], chisq 1017.722
## Mismatched frequencies for 'X:33221282' f[A,G] = [0.120563,0.879437] vs [0.3734,0.6266], chisq 834.0147
## Mismatched frequencies for 'X:33244129' f[C,A] = [0.1542228,0.8457772] vs [0.4122,0.5878], chisq 831.696
## Mismatched frequencies for 'X:33284575' f[C,T] = [0.124847,0.875153] vs [0.3837,0.6163], chisq 863.4604
## Mismatched frequencies for 'X:33284584' f[C,T] = [0.123623,0.876377] vs [0.3855,0.6145], chisq 882.1287
## Mismatched frequencies for 'X:33288229' f[A,G] = [0.2919217,0.7080783] vs [0.5042,0.4958], chisq 535.6826
## Mismatched frequencies for 'X:33315969' f[G,T] = [0.09608323,0.9039168] vs [0.3398,0.6602], chisq 813.8577
## Mismatched frequencies for 'X:33349779' f[G,A] = [0.3359853,0.6640147] vs [0.511,0.489], chisq 363.8201
## Mismatched frequencies for 'X:33518476' f[A,G] = [0.3255814,0.6744186] vs [0.521,0.479], chisq 453.5686
## Mismatched frequencies for 'X:33556867' f[A,G] = [0.3359853,0.6640147] vs [0.5238,0.4762], chisq 419.0149
## Mismatched frequencies for 'X:33611081' f[A,C] = [0.378213,0.621787] vs [0.555,0.445], chisq 373.4415
## Mismatched frequencies for 'X:33624416' f[T,A] = [0.2093023,0.7906977] vs [0.4185,0.5815], chisq 541.708
## Mismatched frequencies for 'X:33627520' f[T,C] = [0.373317,0.626683] vs [0.5586,0.4414], chisq 410.5729
## Mismatched frequencies for 'X:33677284' f[C,A] = [0.50612,0.4938801] vs [0.6625,0.3375], chisq 318.4139
## Mismatched frequencies for 'X:33708429' f[G,A] = [0.1012852,0.8987148] vs [0.3399,0.6601], chisq 779.3974
## Mismatched frequencies for 'X:33713964' f[C,T] = [0.3898409,0.6101591] vs [0.5493,0.4507], chisq 303.4532
## Mismatched frequencies for 'X:33869539' f[G,C] = [0.2062423,0.7937577] vs [0.4359,0.5641], chisq 645.0932
## Mismatched frequencies for 'X:33964770' f[T,G] = [0.2086903,0.7913096] vs [0.436,0.564], chisq 631.831
## Mismatched frequencies for 'X:34054470' f[T,C] = [0.3102815,0.6897185] vs [0.5087,0.4913], chisq 467.7495
## Mismatched frequencies for 'X:34078535' f[G,A] = [0.1866585,0.8133415] vs [0.4089,0.5911], chisq 617.2561
## Mismatched frequencies for 'X:34111826' f[G,A] = [0.3335373,0.6664627] vs [0.5268,0.4732], chisq 443.7464
## Mismatched frequencies for 'X:34145623' f[A,C] = [0.3298654,0.6701347] vs [0.5232,0.4768], chisq 443.9831
## Mismatched frequencies for 'X:34232782' f[A,C] = [0.4902081,0.5097919] vs [0.6527,0.3473], chisq 339.3799
## Mismatched frequencies for 'X:34296351' f[G,A] = [0.373317,0.626683] vs [0.5488,0.4512], chisq 367.3091
## Mismatched frequencies for 'X:34385146' f[A,G] = [0.5238678,0.4761322] vs [0.6744,0.3256], chisq 300.0987
## Mismatched frequencies for 'X:34399866' f[T,C] = [0.03794369,0.9620563] vs [0.3038,0.6962], chisq 1042.131
## Mismatched frequencies for 'X:34406677' f[A,G] = [0.2870257,0.7129743] vs [0.4993,0.5007], chisq 536.0337
## Mismatched frequencies for 'X:34660646' f[C,T] = [0.05324357,0.9467564] vs [0.307,0.693], chisq 940.6443
## Mismatched frequencies for 'X:34748579' f[T,C] = [0.09179927,0.9082007] vs [0.3386,0.6614], chisq 836.6817
## Mismatched frequencies for 'X:34937496' f[A,G] = [0.4210526,0.5789474] vs [0.5791,0.4209], chisq 301.7104
## Mismatched frequencies for 'X:34937765' f[T,G] = [0.0501836,0.9498164] vs [0.2992,0.7008], chisq 920.5028
## Mismatched frequencies for 'X:34994353' f[C,A] = [0.2374541,0.7625459] vs [0.4429,0.5571], chisq 513.1096
## Mismatched frequencies for 'X:35017408' f[A,G] = [0.06854345,0.9314566] vs [0.3175,0.6825], chisq 885.3143
## Mismatched frequencies for 'X:35077154' f[T,G] = [0.1444308,0.8555692] vs [0.3569,0.6431], chisq 599.4933
## Mismatched frequencies for 'X:35277294' f[T,C] = [0.2246022,0.7753978] vs [0.4214,0.5786], chisq 477.8086
## Mismatched frequencies for 'X:35345542' f[T,C] = [0.3108935,0.6891065] vs [0.4848,0.5152], chisq 360.5864
## Mismatched frequencies for 'X:35447740' f[C,T] = [0.253366,0.746634] vs [0.4351,0.5649], chisq 402.9645
## Mismatched frequencies for 'X:35559546' f[A,G] = [0.2600979,0.7399021] vs [0.439,0.561], chisq 389.4462
## Mismatched frequencies for 'X:35569588' f[G,T] = [0.2600979,0.7399021] vs [0.4391,0.5609], chisq 389.8593
## Mismatched frequencies for 'X:36327646' f[G,A] = [0.02937577,0.9706242] vs [0.2988,0.7012], chisq 1083.077
## Mismatched frequencies for 'X:36500570' f[A,G] = [0.02876377,0.9712362] vs [0.2983,0.7017], chisq 1085.236
## Mismatched frequencies for 'X:36681986' f[C,A] = [0.8433293,0.1566707] vs [0.9999,1e-04], chisq 5122.442
## Mismatched frequencies for 'X:36865759' f[C,T] = [0.0630355,0.9369645] vs [0.3103,0.6897], chisq 885.8586
## Mismatched frequencies for 'X:37228380' f[T,C] = [0.04589963,0.9541004] vs [0.3027,0.6973], chisq 972.9233
## Mismatched frequencies for 'X:37789913' f[T,C] = [0.1456548,0.8543451] vs [0.3849,0.6151], chisq 734.9582
## Mismatched frequencies for 'X:37790643' f[T,C] = [0.1750306,0.8249694] vs [0.4151,0.5849], chisq 717.2475
## Mismatched frequencies for 'X:37801032' f[A,G] = [0.02325581,0.9767442] vs [0.3132,0.6868], chisq 1220.605
## Mismatched frequencies for 'X:37860450' f[C,T] = [0.3855569,0.6144431] vs [0.5568,0.4432], chisq 350.6473
## Mismatched frequencies for 'X:38028526' f[C,T] = [0.4329865,0.5670134] vs [0.6026,0.3974], chisq 352.3665
## Mismatched frequencies for 'X:38062355' f[G,A] = [0.1401469,0.8598531] vs [0.3743,0.6257], chisq 712.8818
## Mismatched frequencies for 'X:38074516' f[T,G] = [0.2062423,0.7937577] vs [0.4339,0.5661], chisq 634.7238
## Mismatched frequencies for 'X:38106986' f[G,A] = [0.3678091,0.6321909] vs [0.5313,0.4687], chisq 317.7943
## Mismatched frequencies for 'X:38122907' f[G,A] = [0.3121175,0.6878825] vs [0.4824,0.5176], chisq 345.8994
## Mismatched frequencies for 'X:38206682' f[T,G] = [0.2876377,0.7123623] vs [0.4873,0.5127], chisq 475.2851
## Mismatched frequencies for 'X:38319270' f[T,C] = [0.03488372,0.9651163] vs [0.3041,0.6959], chisq 1068.656
## Mismatched frequencies for 'X:38390074' f[A,G] = [0.03549572,0.9645043] vs [0.3033,0.6967], chisq 1059.034
## Mismatched frequencies for 'X:38540836' f[G,A] = [0.495716,0.504284] vs [0.6662,0.3338], chisq 379.6385
## Mismatched frequencies for 'X:38547862' f[G,A] = [0.382497,0.6175031] vs [0.551,0.449], chisq 338.9345
## Mismatched frequencies for 'X:38642822' f[T,C] = [0.03121175,0.9687883] vs [0.3094,0.6906], chisq 1130.097
## Mismatched frequencies for 'X:38667241' f[C,A] = [0.2276622,0.7723378] vs [0.4694,0.5306], chisq 701.8364
## Mismatched frequencies for 'X:38722071' f[T,C] = [0.3904529,0.6095471] vs [0.5717,0.4283], chisq 394.9551
## Mismatched frequencies for 'X:38817116' f[T,C] = [0.1927784,0.8072215] vs [0.4147,0.5853], chisq 612.22
## Mismatched frequencies for 'X:38888659' f[T,C] = [0.08873929,0.9112607] vs [0.3441,0.6559], chisq 888.6826
## Mismatched frequencies for 'X:38916969' f[T,C] = [0.372093,0.627907] vs [0.557,0.443], chisq 408.6975
## Mismatched frequencies for 'X:38923442' f[G,A] = [0.2830477,0.7169523] vs [0.4795,0.5205], chisq 461.0902
## Mismatched frequencies for 'X:39056926' f[G,A] = [0.07343941,0.9265606] vs [0.3291,0.6709], chisq 914.3278
## Mismatched frequencies for 'X:39066043' f[C,A] = [0.02019584,0.9798042] vs [0.2907,0.7093], chisq 1112.863
## Mismatched frequencies for 'X:39148512' f[C,T] = [0.4345165,0.5654834] vs [0.6004,0.3996], chisq 336.5943
## Mismatched frequencies for 'X:39417662' f[C,T] = [0.247246,0.752754] vs [0.475,0.525], chisq 621.2834
## Mismatched frequencies for 'X:39603351' f[G,A] = [0.4155447,0.5844553] vs [0.6078,0.3922], chisq 453.7598
## Mismatched frequencies for 'X:39607910' f[T,C] = [0.02203182,0.9779682] vs [0.3094,0.6906], chisq 1208.071
## Mismatched frequencies for 'X:39632673' f[T,G] = [0.1897185,0.8102815] vs [0.434,0.566], chisq 731.5561
## Mismatched frequencies for 'X:39645138' f[A,G] = [0.2772338,0.7227662] vs [0.4926,0.5074], chisq 552.4926
## Mismatched frequencies for 'X:39714302' f[C,T] = [0.4742962,0.5257038] vs [0.6364,0.3636], chisq 331.7018
## Mismatched frequencies for 'X:39723321' f[C,T] = [0.1511628,0.8488372] vs [0.4273,0.5727], chisq 941.7579
## Mismatched frequencies for 'X:39734948' f[A,G] = [0.01713586,0.9828641] vs [0.2899,0.7101], chisq 1134.279
## Mismatched frequencies for 'X:39752946' f[T,C] = [0.2686658,0.7313342] vs [0.4721,0.5279], chisq 495.8095
## Mismatched frequencies for 'X:39773862' f[A,G] = [0.3629131,0.6370869] vs [0.546,0.454], chisq 399.483
## Mismatched frequencies for 'X:39947936' f[T,C] = [0.2117503,0.7882497] vs [0.4229,0.5771], chisq 549.9575
## Mismatched frequencies for 'X:40024182' f[A,G] = [0.04712362,0.9528764] vs [0.3021,0.6979], chisq 960.0651
## Mismatched frequencies for 'X:40064033' f[G,A] = [0.3011016,0.6988984] vs [0.4653,0.5347], chisq 323.4052
## Mismatched frequencies for 'X:40091933' f[C,T] = [0.03182375,0.9681762] vs [0.3076,0.6924], chisq 1114.339
## Mismatched frequencies for 'X:40102612' f[A,G] = [0.5410036,0.4589963] vs [0.6962,0.3038], chisq 329.7552
## Mismatched frequencies for 'X:40109672' f[C,T] = [0.2154223,0.7845777] vs [0.4625,0.5375], chisq 735.6654
## Mismatched frequencies for 'X:40125952' f[G,A] = [0.3261934,0.6738066] vs [0.5408,0.4592], chisq 547.9739
## Mismatched frequencies for 'X:40127733' f[T,C] = [0.08200734,0.9179926] vs [0.3498,0.6502], chisq 970.1262
## Mismatched frequencies for 'X:40242991' f[C,T] = [0.0746634,0.9253366] vs [0.3653,0.6347], chisq 1119.712
## Mismatched frequencies for 'X:40251306' f[G,A] = [0.09608323,0.9039168] vs [0.3847,0.6153], chisq 1075.707
## Mismatched frequencies for 'X:40348909' f[G,A] = [0.5887393,0.4112607] vs [0.7343,0.2657], chisq 312.7324
## Mismatched frequencies for 'X:40351243' f[G,A] = [0.3329254,0.6670747] vs [0.5258,0.4742], chisq 441.9368
## Mismatched frequencies for 'X:40428664' f[T,G] = [0.07711139,0.9228886] vs [0.3396,0.6604], chisq 947.1313
## Mismatched frequencies for 'X:40429910' f[A,G] = [0.1015912,0.8984088] vs [0.3732,0.6268], chisq 964.9036
## Mismatched frequencies for 'X:40473966' f[G,A] = [0.08567932,0.9143207] vs [0.3452,0.6548], chisq 916.7894
## Mismatched frequencies for 'X:40492463' f[T,C] = [0.2074663,0.7925336] vs [0.4314,0.5686], chisq 615.0925
## Mismatched frequencies for 'X:40556492' f[C,G] = [0.2821297,0.7178702] vs [0.4767,0.5233], chisq 452.679
## Mismatched frequencies for 'X:40618904' f[G,A] = [0.5514076,0.4485924] vs [0.7004,0.2996], chisq 306.4022
## Mismatched frequencies for 'X:40804609' f[G,A] = [0.1725826,0.8274174] vs [0.4138,0.5862], chisq 725.0421
## Mismatched frequencies for 'X:40812646' f[A,C] = [0.2937576,0.7062423] vs [0.5167,0.4833], chisq 590.3409
## Mismatched frequencies for 'X:40856473' f[G,A] = [0.2417381,0.7582619] vs [0.4461,0.5539], chisq 506.6931
## Mismatched frequencies for 'X:40861569' f[C,T] = [0.499388,0.500612] vs [0.6751,0.3249], chisq 407.9594
## Mismatched frequencies for 'X:40885562' f[A,G] = [0.3512852,0.6487148] vs [0.5304,0.4696], chisq 381.3281
## Mismatched frequencies for 'X:41020340' f[G,A] = [0.125459,0.874541] vs [0.3619,0.6381], chisq 739.4079
## Mismatched frequencies for 'X:41087820' f[A,G] = [0.3500612,0.6499388] vs [0.5197,0.4803], chisq 341.8022
## Mismatched frequencies for 'X:41123251' f[T,C] = [0.3910649,0.6089351] vs [0.5673,0.4327], chisq 372.7813
## Mismatched frequencies for 'X:41128493' f[C,T] = [0.2607099,0.7392901] vs [0.4777,0.5223], chisq 563.2096
## Mismatched frequencies for 'X:41252835' f[A,G] = [0.244798,0.7552019] vs [0.4367,0.5633], chisq 449.1163
## Mismatched frequencies for 'X:41282288' f[T,C] = [0.2827417,0.7172583] vs [0.4905,0.5095], chisq 514.3085
## Mismatched frequencies for 'X:41329275' f[C,A] = [0.1364749,0.8635251] vs [0.3854,0.6146], chisq 795.9985
## Mismatched frequencies for 'X:41493905' f[C,T] = [0.118115,0.8818849] vs [0.3715,0.6285], chisq 839.8029
## Mismatched frequencies for 'X:41652445' f[C,T] = [0.09179927,0.9082007] vs [0.3467,0.6533], chisq 881.6792
## Mismatched frequencies for 'X:41827452' f[G,A] = [0.04834761,0.9516524] vs [0.3064,0.6936], chisq 974.8269
## Mismatched frequencies for 'X:41947128' f[C,T] = [0.2974296,0.7025704] vs [0.4987,0.5013], chisq 481.869
## Mismatched frequencies for 'X:41955510' f[T,C] = [0.3543452,0.6456549] vs [0.5357,0.4643], chisq 391.1898
## Mismatched frequencies for 'X:41967720' f[A,G] = [0.2129743,0.7870257] vs [0.4439,0.5561], chisq 648.8165
## Mismatched frequencies for 'X:42576676' f[G,A] = [0.4452264,0.5547736] vs [0.6078,0.3922], chisq 325.1342
## Mismatched frequencies for 'X:42636362' f[A,C] = [0.0746634,0.9253366] vs [0.3337,0.6663], chisq 931.3988
## Mismatched frequencies for 'X:43029509' f[G,A] = [0.1560588,0.8439413] vs [0.385,0.615], chisq 672.1877
## Mismatched frequencies for 'X:43065724' f[A,G] = [0.3365973,0.6634027] vs [0.5295,0.4705], chisq 442.1963
## Mismatched frequencies for 'X:43237249' f[A,G] = [0.02876377,0.9712362] vs [0.3073,0.6927], chisq 1138.107
## Mismatched frequencies for 'X:43323159' f[A,G] = [0.3304774,0.6695226] vs [0.5255,0.4745], chisq 451.8209
## Mismatched frequencies for 'X:43372713' f[G,A] = [0.2778458,0.7221542] vs [0.4836,0.5164], chisq 505.3023
## Mismatched frequencies for 'X:43410668' f[A,G] = [0.2723378,0.7276622] vs [0.4829,0.5171], chisq 529.3671
## Mismatched frequencies for 'X:43493189' f[C,T] = [0.2998776,0.7001224] vs [0.501,0.499], chisq 480.9951
## Mismatched frequencies for 'X:43517364' f[A,G] = [0.3023256,0.6976744] vs [0.4993,0.5007], chisq 461.4476
## Mismatched frequencies for 'X:43599521' f[T,C] = [0.3384333,0.6615667] vs [0.5331,0.4669], chisq 450.4891
## Mismatched frequencies for 'X:43603391' f[T,C] = [0.2986536,0.7013464] vs [0.4998,0.5002], chisq 481.1934
## Mismatched frequencies for 'X:43612708' f[G,A] = [0.3990208,0.6009792] vs [0.585,0.415], chisq 418.5325
## Mismatched frequencies for 'X:43742659' f[A,G] = [0.02998776,0.9700123] vs [0.3006,0.6994], chisq 1088.487
## Mismatched frequencies for 'X:43822924' f[T,C] = [0.3219094,0.6780906] vs [0.5123,0.4877], chisq 430.5568
## Mismatched frequencies for 'X:43877475' f[A,G] = [0.3812729,0.618727] vs [0.5452,0.4548], chisq 320.3197
## Mismatched frequencies for 'X:43947707' f[G,T] = [0.124847,0.875153] vs [0.3592,0.6408], chisq 729.0297
## Mismatched frequencies for 'X:43949016' f[C,T] = [0.2662179,0.7337821] vs [0.4697,0.5303], chisq 496.5028
## Mismatched frequencies for 'X:43980175' f[C,T] = [0.07833537,0.9216647] vs [0.3307,0.6693], chisq 887.8296
## Mismatched frequencies for 'X:44006222' f[G,A] = [0.009179926,0.99082] vs [0.2857,0.7143], chisq 1178.784
## Mismatched frequencies for 'X:44079458' f[C,T] = [0.3069155,0.6930845] vs [0.4877,0.5123], chisq 389.4598
## Mismatched frequencies for 'X:44226057' f[T,C] = [0.0373317,0.9626683] vs [0.3077,0.6923], chisq 1069.699
## Mismatched frequencies for 'X:44249895' f[A,G] = [0.9926561,0.007343941] vs [0.3088,0.6912], chisq 5948.108
## Mismatched frequencies for 'X:44281368' f[G,A] = [0.3904529,0.6095471] vs [0.5653,0.4347], chisq 366.6535
## Mismatched frequencies for 'X:44440039' f[A,G] = [0.249694,0.750306] vs [0.4697,0.5303], chisq 580.7665
## Mismatched frequencies for 'X:44440251' f[T,C] = [0.4596083,0.5403917] vs [0.6193,0.3807], chisq 316.7604
## Mismatched frequencies for 'X:44472620' f[G,A] = [0.4651163,0.5348837] vs [0.6235,0.3765], chisq 312.8007
## Mismatched frequencies for 'X:44474453' f[C,A] = [0.03427173,0.9657283] vs [0.3074,0.6926], chisq 1092.943
## Mismatched frequencies for 'X:44476910' f[A,G] = [0.3586291,0.6413709] vs [0.5545,0.4455], chisq 458.1057
## Mismatched frequencies for 'X:44493610' f[C,G] = [0.120563,0.879437] vs [0.3584,0.6416], chisq 752.0912
## Mismatched frequencies for 'X:44527255' f[T,C] = [0.2264382,0.7735618] vs [0.4487,0.5513], chisq 599.0021
## Mismatched frequencies for 'X:44562672' f[T,C] = [0.3601591,0.6398409] vs [0.548,0.452], chisq 420.6568
## Mismatched frequencies for 'X:44592980' f[T,C] = [0.4944921,0.505508] vs [0.6571,0.3429], chisq 341.683
## Mismatched frequencies for 'X:44635630' f[A,G] = [0.4314565,0.5685434] vs [0.593,0.407], chisq 317.7137
## Mismatched frequencies for 'X:44811118' f[T,C] = [0.04712362,0.9528764] vs [0.3025,0.6975], chisq 962.3108
## Mismatched frequencies for 'X:45040802' f[G,A] = [0.2166463,0.7833537] vs [0.4162,0.5838], chisq 493.5054
## Mismatched frequencies for 'X:45153245' f[T,G] = [0.2962056,0.7037944] vs [0.5075,0.4925], chisq 530.5334
## Mismatched frequencies for 'X:45244798' f[A,G] = [0.02264382,0.9773562] vs [0.2921,0.7079], chisq 1100.323
## Mismatched frequencies for 'X:45437079' f[A,G] = [0.05569155,0.9443085] vs [0.3143,0.6857], chisq 963.1343
## Mismatched frequencies for 'X:45518452' f[A,G] = [0.04834761,0.9516524] vs [0.3036,0.6964], chisq 959.0429
## Mismatched frequencies for 'X:45527650' f[T,C] = [0.126683,0.873317] vs [0.3744,0.6256], chisq 799.0434
## Mismatched frequencies for 'X:45549899' f[C,T] = [0.121787,0.878213] vs [0.3813,0.6187], chisq 870.4938
## Mismatched frequencies for 'X:45552235' f[C,G] = [0.1854345,0.8145655] vs [0.4446,0.5554], chisq 818.1927
## Mismatched frequencies for 'X:45573361' f[T,C] = [0.1389229,0.8610771] vs [0.4123,0.5877], chisq 935.1093
## Mismatched frequencies for 'X:45586467' f[G,A] = [0.09302325,0.9069768] vs [0.3679,0.6321], chisq 995.8487
## Mismatched frequencies for 'X:45621472' f[G,A] = [0.2613219,0.7386781] vs [0.4803,0.5197], chisq 573.1198
## Mismatched frequencies for 'X:45795548' f[G,A] = [0.3206854,0.6793145] vs [0.5057,0.4943], chisq 406.7472
## Mismatched frequencies for 'X:45806699' f[C,T] = [0.06915545,0.9308445] vs [0.3372,0.6628], chisq 992.6177
## Mismatched frequencies for 'X:45810458' f[C,A] = [0.3335373,0.6664627] vs [0.5415,0.4585], chisq 514.6877
## Mismatched frequencies for 'X:45827482' f[T,C] = [0.1713586,0.8286414] vs [0.4223,0.5777], chisq 779.4751
## Mismatched frequencies for 'X:45830307' f[C,A] = [0.01897185,0.9810281] vs [0.2946,0.7054], chisq 1146.063
## Mismatched frequencies for 'X:45873682' f[T,C] = [0.4388005,0.5611995] vs [0.6172,0.3828], chisq 394.033
## Mismatched frequencies for 'X:45898681' f[C,T] = [0.1529988,0.8470012] vs [0.3931,0.6069], chisq 733.38
## Mismatched frequencies for 'X:45977819' f[C,A] = [0.4485924,0.5514076] vs [0.6088,0.3912], chisq 316.0375
## Mismatched frequencies for 'X:46059303' f[C,T] = [0.3451652,0.6548348] vs [0.5342,0.4658], chisq 424.8883
## Mismatched frequencies for 'X:46097094' f[T,C] = [0.01529988,0.9847001] vs [0.2906,0.7094], chisq 1154.166
## Mismatched frequencies for 'X:46203987' f[C,T] = [0.3482252,0.6517748] vs [0.5316,0.4684], chisq 399.7198
## Mismatched frequencies for 'X:46246592' f[T,C] = [0.4596083,0.5403917] vs [0.6338,0.3662], chisq 381.5762
## Mismatched frequencies for 'X:46254035' f[C,T] = [0.3255814,0.6744186] vs [0.5163,0.4837], chisq 431.9986
## Mismatched frequencies for 'X:46262137' f[T,C] = [0.4179927,0.5820074] vs [0.5866,0.4134], chisq 344.6193
## Mismatched frequencies for 'X:46285456' f[G,T] = [0.1432068,0.8567932] vs [0.4033,0.5967], chisq 852.9648
## Mismatched frequencies for 'X:46304404' f[C,T] = [0.3427173,0.6572828] vs [0.5095,0.4905], chisq 330.4105
## Mismatched frequencies for 'X:46598739' f[T,G] = [0.2931457,0.7068543] vs [0.4913,0.5087], chisq 467.6841
## Mismatched frequencies for 'X:46603628' f[C,T] = [0.4571603,0.5428397] vs [0.6152,0.3848], chisq 309.1912
## Mismatched frequencies for 'X:46941458' f[G,A] = [0.2570379,0.7429621] vs [0.4656,0.5344], chisq 522.5891
## Mismatched frequencies for 'X:46946480' f[G,A] = [0.4167687,0.5832313] vs [0.5771,0.4229], chisq 310.1394
## Mismatched frequencies for 'X:46960120' f[C,T] = [0.3176255,0.6823745] vs [0.534,0.466], chisq 556.4903
## Mismatched frequencies for 'X:47036593' f[G,A] = [0.3286414,0.6713586] vs [0.5417,0.4583], chisq 540.1952
## Mismatched frequencies for 'X:47086347' f[G,A] = [0.3035496,0.6964504] vs [0.5172,0.4828], chisq 542.1395
## Mismatched frequencies for 'X:47132056' f[A,G] = [0.06823745,0.9317625] vs [0.3362,0.6638], chisq 993.7343
## Mismatched frequencies for 'X:47172983' f[T,C] = [0.03427173,0.9657283] vs [0.3051,0.6949], chisq 1079.481
## Mismatched frequencies for 'X:47200127' f[C,A] = [0.4222766,0.5777234] vs [0.6251,0.3749], chisq 511.8175
## Mismatched frequencies for 'X:47214228' f[C,T] = [0.5514076,0.4485924] vs [0.7157,0.2843], chisq 382.1297
## Mismatched frequencies for 'X:47524211' f[C,T] = [0.05324357,0.9467564] vs [0.3109,0.6891], chisq 962.5834
## Mismatched frequencies for 'X:47608676' f[G,A] = [0.243574,0.756426] vs [0.4449,0.5551], chisq 492.021
## Mismatched frequencies for 'X:47925966' f[A,C] = [0.03855569,0.9614443] vs [0.3054,0.6946], chisq 1046.444
## Mismatched frequencies for 'X:48146637' f[G,A] = [0.5293758,0.4706242] vs [0.6844,0.3156], chisq 322.8451
## Mismatched frequencies for 'X:48150199' f[G,A] = [0.4926561,0.5073439] vs [0.6491,0.3509], chisq 313.4592
## Mismatched frequencies for 'X:48155807' f[C,T] = [0.4559363,0.5440636] vs [0.638,0.362], chisq 418.3185
## Mismatched frequencies for 'X:48157164' f[T,G] = [0.4094247,0.5905753] vs [0.6062,0.3938], chisq 474.6416
## Mismatched frequencies for 'X:48205223' f[G,A] = [0.4228886,0.5771114] vs [0.6103,0.3897], chisq 432.1469
## Mismatched frequencies for 'X:48291665' f[G,A] = [0.4002448,0.5997552] vs [0.574,0.426], chisq 363.4762
## Mismatched frequencies for 'X:48313082' f[G,A] = [0.3457772,0.6542228] vs [0.5384,0.4616], chisq 441.4286
## Mismatched frequencies for 'X:48456223' f[G,T] = [0.0875153,0.9124847] vs [0.3511,0.6489], chisq 937.376
## Mismatched frequencies for 'X:48459962' f[G,A] = [0.0875153,0.9124847] vs [0.3512,0.6488], chisq 937.9532
## Mismatched frequencies for 'X:48486345' f[A,G] = [0.03916769,0.9608323] vs [0.3123,0.6877], chisq 1081.724
## Mismatched frequencies for 'X:48763481' f[A,G] = [0.379437,0.620563] vs [0.5442,0.4558], chisq 323.5122
## Mismatched frequencies for 'X:49164880' f[T,C] = [0.4143207,0.5856793] vs [0.583,0.417], chisq 344.2103
## Mismatched frequencies for 'X:49173299' f[C,G] = [0.4130967,0.5869033] vs [0.5823,0.4177], chisq 346.2103
## Mismatched frequencies for 'X:49370787' f[A,T] = [0.4118727,0.5881273] vs [0.5823,0.4177], chisq 351.2159
## Mismatched frequencies for 'X:49370901' f[G,A] = [0.4118727,0.5881273] vs [0.5823,0.4177], chisq 351.2159
## Mismatched frequencies for 'X:49401262' f[G,T] = [0.4124847,0.5875153] vs [0.5821,0.4179], chisq 347.8535
## Mismatched frequencies for 'X:49486929' f[A,T] = [0.3243574,0.6756426] vs [0.5393,0.4607], chisq 549.5534
## Mismatched frequencies for 'X:49697654' f[G,A] = [0.2166463,0.7833537] vs [0.4465,0.5535], chisq 641.7303
## Mismatched frequencies for 'X:49891340' f[A,G] = [0.03059975,0.9694002] vs [0.3,0.7], chisq 1079.946
## Mismatched frequencies for 'X:50058276' f[G,A] = [0.4020808,0.5979192] vs [0.6008,0.3992], chisq 482.1691
## Mismatched frequencies for 'X:50072940' f[A,G] = [0.1511628,0.8488372] vs [0.4164,0.5836], chisq 876.3065
## Mismatched frequencies for 'X:50108144' f[G,A] = [0.05752754,0.9424725] vs [0.3198,0.6802], chisq 980.4623
## Mismatched frequencies for 'X:50295570' f[A,G] = [0.124235,0.875765] vs [0.3808,0.6192], chisq 851.0726
## Mismatched frequencies for 'X:50324903' f[C,T] = [0.2698898,0.7301102] vs [0.4887,0.5113], chisq 570.8673
## Mismatched frequencies for 'X:50344695' f[A,G] = [0.2631579,0.7368421] vs [0.4897,0.5103], chisq 611.8802
## Mismatched frequencies for 'X:50346131' f[C,T] = [0.2913096,0.7086904] vs [0.5041,0.4959], chisq 538.2794
## Mismatched frequencies for 'X:50379075' f[T,G] = [0.3604651,0.6395349] vs [0.5364,0.4636], chisq 368.2266
## Mismatched frequencies for 'X:50567071' f[A,G] = [0.3886169,0.6113831] vs [0.5644,0.4356], chisq 370.4455
## Mismatched frequencies for 'X:50604639' f[A,G] = [0.379437,0.620563] vs [0.5571,0.4429], chisq 377.3961
## Mismatched frequencies for 'X:50610985' f[C,T] = [0.07343941,0.9265606] vs [0.3416,0.6584], chisq 986.0215
## Mismatched frequencies for 'X:50621872' f[T,C] = [0.1848225,0.8151775] vs [0.4309,0.5691], chisq 744.157
## Mismatched frequencies for 'X:50749559' f[T,C] = [0.4804161,0.5195838] vs [0.6422,0.3578], chisq 332.445
## Mismatched frequencies for 'X:50768860' f[T,C] = [0.04345165,0.9565483] vs [0.315,0.685], chisq 1062.974
## Mismatched frequencies for 'X:50775077' f[G,A] = [0.00122399,0.998776] vs [0.895,0.105], chisq 15618.63
## Mismatched frequencies for 'X:50795757' f[C,T] = [0.00122399,0.998776] vs [0.2899,0.7101], chisq 1274.968
## Mismatched frequencies for 'X:50830238' f[C,T] = [0.3115055,0.6884945] vs [0.5235,0.4765], chisq 533.7926
## Mismatched frequencies for 'X:50844180' f[T,C] = [0.009179926,0.99082] vs [0.2912,0.7088], chisq 1211.241
## Mismatched frequencies for 'X:50919105' f[A,G] = [0.1790086,0.8209915] vs [0.4145,0.5855], chisq 690.2658
## Mismatched frequencies for 'X:50937700' f[G,A] = [0.1799266,0.8200734] vs [0.4204,0.5796], chisq 716.3701
## Mismatched frequencies for 'X:50965028' f[C,T] = [0.1964504,0.8035496] vs [0.436,0.564], chisq 702.2597
## Mismatched frequencies for 'X:51190145' f[G,A] = [0.2864137,0.7135863] vs [0.4821,0.5179], chisq 457.137
## Mismatched frequencies for 'X:51241672' f[C,T] = [0.370869,0.629131] vs [0.5312,0.4688], chisq 305.6359
## Mismatched frequencies for 'X:51245461' f[C,A] = [0.370257,0.629743] vs [0.5315,0.4685], chisq 309.1317
## Mismatched frequencies for 'X:51299747' f[T,G] = [0.2270502,0.7729498] vs [0.4287,0.5713], chisq 499.0105
## Mismatched frequencies for 'X:51310376' f[C,T] = [0.3671971,0.632803] vs [0.5286,0.4714], chisq 309.6349
## Mismatched frequencies for 'X:51397726' f[G,A] = [0.3463892,0.6536108] vs [0.5176,0.4824], chisq 348.1471
## Mismatched frequencies for 'X:51475161' f[G,A] = [0.3225214,0.6774786] vs [0.495,0.505], chisq 353.9278
## Mismatched frequencies for 'X:51697194' f[C,T] = [0.3249694,0.6750306] vs [0.4965,0.5035], chisq 349.9591
## Mismatched frequencies for 'X:51779102' f[A,G] = [0.3249694,0.6750306] vs [0.4945,0.5055], chisq 341.9457
## Mismatched frequencies for 'X:51994546' f[G,C] = [0.370257,0.629743] vs [0.5649,0.4351], chisq 453.9863
## Mismatched frequencies for 'X:52833945' f[T,C] = [0.03059975,0.9694002] vs [0.3012,0.6988], chisq 1086.926
## Mismatched frequencies for 'X:53017633' f[G,A] = [0.1787026,0.8212974] vs [0.4086,0.5914], chisq 661.1387
## Mismatched frequencies for 'X:53032280' f[A,G] = [0.2099143,0.7900857] vs [0.4244,0.5756], chisq 566.933
## Mismatched frequencies for 'X:53033559' f[T,C] = [0.03427173,0.9657283] vs [0.2937,0.7063], chisq 1013.924
## Mismatched frequencies for 'X:53055916' f[A,G] = [0.1401469,0.8598531] vs [0.3835,0.6165], chisq 762.0276
## Mismatched frequencies for 'X:53124816' f[A,G] = [0.1866585,0.8133415] vs [0.4312,0.5688], chisq 734.6516
## Mismatched frequencies for 'X:53145835' f[C,G] = [0.1823745,0.8176255] vs [0.4202,0.5798], chisq 700.6551
## Mismatched frequencies for 'X:53238854' f[T,C] = [0.01958384,0.9804162] vs [0.3135,0.6865], chisq 1254.442
## Mismatched frequencies for 'X:53255291' f[T,G] = [0.01713586,0.9828641] vs [0.3009,0.6991], chisq 1199.294
## Mismatched frequencies for 'X:53291886' f[T,G] = [0.01897185,0.9810281] vs [0.2998,0.7002], chisq 1176.819
## Mismatched frequencies for 'X:53297928' f[C,T] = [0.02019584,0.9798042] vs [0.3018,0.6982], chisq 1178.194
## Mismatched frequencies for 'X:53306207' f[T,C] = [0.06058751,0.9394125] vs [0.3416,0.6584], chisq 1084.96
## Mismatched frequencies for 'X:53471786' f[A,G] = [0.4155447,0.5844553] vs [0.5888,0.4112], chisq 364.2619
## Mismatched frequencies for 'X:53649492' f[G,A] = [0.4608323,0.5391677] vs [0.6241,0.3759], chisq 332.4361
## Mismatched frequencies for 'X:53744116' f[C,T] = [0.4577723,0.5422277] vs [0.6169,0.3831], chisq 313.8882
## Mismatched frequencies for 'X:53791773' f[T,C] = [0.4351285,0.5648715] vs [0.6,0.4], chisq 332.4283
## Mismatched frequencies for 'X:53843563' f[A,G] = [0.5195838,0.4804161] vs [0.6803,0.3197], chisq 344.5688
## Mismatched frequencies for 'X:53904405' f[G,T] = [0.2093023,0.7906977] vs [0.4341,0.5659], chisq 618.6721
## Mismatched frequencies for 'X:54460107' f[C,T] = [0.1383109,0.8616891] vs [0.3737,0.6263], chisq 721.0917
## Mismatched frequencies for 'X:54888768' f[G,A] = [0.3427173,0.6572828] vs [0.5386,0.4614], chisq 456.4892
## Mismatched frequencies for 'X:54918028' f[C,T] = [0.3427173,0.6572828] vs [0.5401,0.4599], chisq 463.6155
## Mismatched frequencies for 'X:54953647' f[G,A] = [0.3433292,0.6566707] vs [0.5418,0.4582], chisq 468.8781
## Mismatched frequencies for 'X:55116466' f[C,G] = [0.004895961,0.995104] vs [0.2856,0.7144], chisq 1216.188
## Mismatched frequencies for 'X:55129982' f[T,C] = [0.4638923,0.5361077] vs [0.6383,0.3617], chisq 384.2749
## Mismatched frequencies for 'X:55208161' f[G,A] = [0.4155447,0.5844553] vs [0.6146,0.3854], chisq 488.756
## Mismatched frequencies for 'X:55287820' f[T,G] = [0.02141983,0.9785802] vs [0.3078,0.6922], chisq 1203.675
## Mismatched frequencies for 'X:55289774' f[T,C] = [0.02203182,0.9779682] vs [0.3082,0.6918], chisq 1200.808
## Mismatched frequencies for 'X:55310295' f[A,C] = [0.02141983,0.9785802] vs [0.3084,0.6916], chisq 1207.305
## Mismatched frequencies for 'X:55354496' f[C,T] = [0.3182374,0.6817625] vs [0.5531,0.4469], chisq 657.7522
## Mismatched frequencies for 'X:55433100' f[C,T] = [0.01958384,0.9804162] vs [0.3069,0.6931], chisq 1214.146
## Mismatched frequencies for 'X:55651001' f[T,C] = [0.02019584,0.9798042] vs [0.3077,0.6923], chisq 1213.674
## Mismatched frequencies for 'X:55778139' f[T,C] = [0.2711138,0.7288862] vs [0.5209,0.4791], chisq 741.0328
## Mismatched frequencies for 'X:55852696' f[G,T] = [0.2717258,0.7282742] vs [0.5204,0.4796], chisq 734.4545
## Mismatched frequencies for 'X:55853321' f[G,A] = [0.2717258,0.7282742] vs [0.5204,0.4796], chisq 734.4545
## Mismatched frequencies for 'X:55862240' f[A,G] = [0.02141983,0.9785802] vs [0.3075,0.6925], chisq 1201.862
## Mismatched frequencies for 'X:55920595' f[T,C] = [0.02019584,0.9798042] vs [0.307,0.693], chisq 1209.436
## Mismatched frequencies for 'X:55936822' f[A,G] = [0.2741738,0.7258262] vs [0.5051,0.4949], chisq 633.9958
## Mismatched frequencies for 'X:55960724' f[T,C] = [0.1407589,0.8592411] vs [0.3979,0.6021], chisq 838.2064
## Mismatched frequencies for 'X:56152985' f[G,A] = [0.2374541,0.7625459] vs [0.5021,0.4979], chisq 833.4387
## Mismatched frequencies for 'X:56226649' f[G,A] = [0.2258262,0.7741738] vs [0.495,0.505], chisq 863.5468
## Mismatched frequencies for 'X:56345127' f[G,A] = [0.2166463,0.7833537] vs [0.471,0.529], chisq 776.8563
## Mismatched frequencies for 'X:56428273' f[C,T] = [0.1370869,0.8629131] vs [0.401,0.599], chisq 880.6173
## Mismatched frequencies for 'X:56495976' f[C,T] = [0.246634,0.753366] vs [0.5074,0.4926], chisq 808.474
## Mismatched frequencies for 'X:56544404' f[G,A] = [0.01529988,0.9847001] vs [0.2983,0.7017], chisq 1199.737
## Mismatched frequencies for 'X:56574856' f[A,G] = [0.01591187,0.9840881] vs [0.303,0.697], chisq 1222.618
## Mismatched frequencies for 'X:56640134' f[T,C] = [0.2380661,0.7619339] vs [0.4976,0.5024], chisq 802.1772
## Mismatched frequencies for 'X:56681198' f[T,G] = [0.08078335,0.9192166] vs [0.348,0.652], chisq 968.665
## Mismatched frequencies for 'X:56847280' f[G,A] = [0.1762546,0.8237454] vs [0.4452,0.5548], chisq 881.2777
## Mismatched frequencies for 'X:56870961' f[C,T] = [0.1762546,0.8237454] vs [0.4447,0.5553], chisq 878.2645
## Mismatched frequencies for 'X:57008216' f[C,T] = [0.2239902,0.7760098] vs [0.4875,0.5125], chisq 829.1259
## Mismatched frequencies for 'X:57010138' f[C,T] = [0.2074663,0.7925336] vs [0.4643,0.5357], chisq 794.559
## Mismatched frequencies for 'X:57204184' f[A,C] = [0.02386781,0.9761322] vs [0.2976,0.7024], chisq 1122.064
## Mismatched frequencies for 'X:57329089' f[G,A] = [0.2288862,0.7711138] vs [0.4893,0.5107], chisq 809.2755
## Mismatched frequencies for 'X:58282545' f[T,G] = [0.02080783,0.9791921] vs [0.3039,0.6961], chisq 1185.483
## Mismatched frequencies for 'X:58339545' f[T,C] = [0.4317626,0.5682375] vs [0.6106,0.3894], chisq 393.8421
## Mismatched frequencies for 'X:58483247' f[G,A] = [0.08506732,0.9149327] vs [0.3194,0.6806], chisq 779.4174
## Mismatched frequencies for 'X:61924496' f[G,T] = [0.5489596,0.4510404] vs [0.702,0.298], chisq 323.9719
## Mismatched frequencies for 'X:61999396' f[A,C] = [0.4877601,0.5122399] vs [0.6476,0.3524], chisq 326.5326
## Mismatched frequencies for 'X:62059511' f[C,T] = [0.01897185,0.9810281] vs [0.2989,0.7011], chisq 1171.467
## Mismatched frequencies for 'X:62261609' f[G,T] = [0.6787026,0.3212974] vs [0.8097,0.1903], chisq 315.7607
## Mismatched frequencies for 'X:63029564' f[G,T] = [0.0257038,0.9742962] vs [0.3045,0.6955], chisq 1147.262
## Mismatched frequencies for 'X:63562254' f[C,A] = [0.01652387,0.9834762] vs [0.2912,0.7088], chisq 1147.129
## Mismatched frequencies for 'X:63688588' f[A,G] = [0.04039168,0.9596083] vs [0.3098,0.6902], chisq 1057.194
## Mismatched frequencies for 'X:63920087' f[C,G] = [0.02937577,0.9706242] vs [0.3043,0.6957], chisq 1115.239
## Mismatched frequencies for 'X:64041387' f[A,G] = [0.1689106,0.8310894] vs [0.4044,0.5956], chisq 696.8676
## Mismatched frequencies for 'X:64115622' f[C,T] = [0.1695226,0.8304774] vs [0.3999,0.6001], chisq 669.6646
## Mismatched frequencies for 'X:64978060' f[T,C] = [0.003671971,0.9963281] vs [0.3086,0.6914], chisq 1367.291
## Mismatched frequencies for 'X:65328292' f[G,A] = [0.127907,0.872093] vs [0.3855,0.6145], chisq 853.1035
## Mismatched frequencies for 'X:65382685' f[T,C] = [0.3231334,0.6768666] vs [0.4824,0.5176], chisq 302.5132
## Mismatched frequencies for 'X:65420609' f[A,G] = [0.07037944,0.9296206] vs [0.3183,0.6817], chisq 876.4163
## Mismatched frequencies for 'X:65537415' f[C,T] = [0.2227662,0.7772338] vs [0.4499,0.5501], chisq 625.2754
## Mismatched frequencies for 'X:65563508' f[A,C] = [0.1946144,0.8053855] vs [0.4205,0.5795], chisq 631.3295
## Mismatched frequencies for 'X:65606556' f[C,G] = [0.1936964,0.8063036] vs [0.4276,0.5724], chisq 673.4788
## Mismatched frequencies for 'X:65606693' f[T,A] = [0.1933905,0.8066096] vs [0.4222,0.5778], chisq 647.0119
## Mismatched frequencies for 'X:65632779' f[A,G] = [0.1927784,0.8072215] vs [0.4221,0.5779], chisq 649.9891
## Mismatched frequencies for 'X:65698694' f[G,A] = [0.2050184,0.7949817] vs [0.4316,0.5684], chisq 629.7446
## Mismatched frequencies for 'X:65810074' f[T,C] = [0.2007344,0.7992656] vs [0.4291,0.5709], chisq 640.9758
## Mismatched frequencies for 'X:65824986' f[C,T] = [0.1940024,0.8059975] vs [0.427,0.573], chisq 668.5411
## Mismatched frequencies for 'X:65998455' f[A,G] = [0.1456548,0.8543451] vs [0.3981,0.6019], chisq 807.3275
## Mismatched frequencies for 'X:66136420' f[C,T] = [0.1474908,0.8525092] vs [0.3972,0.6028], chisq 790.4719
## Mismatched frequencies for 'X:66170500' f[G,A] = [0.1505508,0.8494492] vs [0.3982,0.6018], chisq 776.4984
## Mismatched frequencies for 'X:66335096' f[A,G] = [0.1548348,0.8451652] vs [0.3977,0.6023], chisq 746.8379
## Mismatched frequencies for 'X:66405249' f[C,T] = [0.2600979,0.7399021] vs [0.4896,0.5104], chisq 628.0324
## Mismatched frequencies for 'X:66481800' f[C,A] = [0.1744186,0.8255814] vs [0.4105,0.5895], chisq 696.3098
## Mismatched frequencies for 'X:66510984' f[G,A] = [0.1848225,0.8151775] vs [0.415,0.585], chisq 658.8849
## Mismatched frequencies for 'X:66875756' f[T,C] = [0.1621787,0.8378213] vs [0.3968,0.6032], chisq 697.1044
## Mismatched frequencies for 'X:67003584' f[C,A] = [0.2074663,0.7925336] vs [0.4295,0.5705], chisq 605.4757
## Mismatched frequencies for 'X:67021550' f[C,T] = [0.2062423,0.7937577] vs [0.4284,0.5716], chisq 606.6616
## Mismatched frequencies for 'X:67050113' f[G,A] = [0.2068543,0.7931457] vs [0.4286,0.5714], chisq 604.3046
## Mismatched frequencies for 'X:67281956' f[T,G] = [0.07099143,0.9290085] vs [0.3417,0.6583], chisq 1005.074
## Mismatched frequencies for 'X:67319294' f[C,G] = [0.3880049,0.6119951] vs [0.5613,0.4387], chisq 359.6423
## Mismatched frequencies for 'X:67422048' f[G,C] = [0.09057528,0.9094247] vs [0.345,0.655], chisq 880.7555
## Mismatched frequencies for 'X:67431814' f[A,G] = [0.2285802,0.7714198] vs [0.4456,0.5544], chisq 571.9734
## Mismatched frequencies for 'X:67432612' f[T,C] = [0.08629131,0.9137087] vs [0.3361,0.6639], chisq 861.2998
## Mismatched frequencies for 'X:67625009' f[C,A] = [0.1903305,0.8096695] vs [0.4345,0.5655], chisq 730.6141
## Mismatched frequencies for 'X:67627600' f[A,G] = [0.09914321,0.9008568] vs [0.3633,0.6367], chisq 924.4137
## Mismatched frequencies for 'X:67645007' f[G,A] = [0.1089351,0.8910649] vs [0.376,0.624], chisq 928.9402
## Mismatched frequencies for 'X:67707597' f[T,C] = [0.08261934,0.9173807] vs [0.354,0.646], chisq 990.2609
## Mismatched frequencies for 'X:67891779' f[T,G] = [0.123011,0.876989] vs [0.3572,0.6428], chisq 730.1249
## Mismatched frequencies for 'X:67977850' f[T,C] = [0.2025704,0.7974296] vs [0.4162,0.5838], chisq 566.2061
## Mismatched frequencies for 'X:68069525' f[C,T] = [0.4002448,0.5997552] vs [0.5753,0.4247], chisq 369.143
## Mismatched frequencies for 'X:68095800' f[G,A] = [0.498776,0.501224] vs [0.6573,0.3427], chisq 324.9667
## Mismatched frequencies for 'X:68101801' f[G,A] = [0.4045288,0.5954713] vs [0.59,0.41], chisq 417.4603
## Mismatched frequencies for 'X:68112281' f[A,C] = [0.1634027,0.8365973] vs [0.3836,0.6164], chisq 622.2623
## Mismatched frequencies for 'X:68210468' f[C,G] = [0.04773562,0.9522644] vs [0.3104,0.6896], chisq 1002.365
## Mismatched frequencies for 'X:68226731' f[A,C] = [0.2093023,0.7906977] vs [0.4315,0.5685], chisq 605.4777
## Mismatched frequencies for 'X:68280741' f[T,G] = [0.2135863,0.7864137] vs [0.4179,0.5821], chisq 516.7763
## Mismatched frequencies for 'X:68326037' f[A,G] = [0.0373317,0.9626683] vs [0.2969,0.7031], chisq 1007.575
## Mismatched frequencies for 'X:68354952' f[C,T] = [0.2350061,0.7649939] vs [0.4169,0.5831], chisq 409.2253
## Mismatched frequencies for 'X:68377937' f[A,G] = [0.3274174,0.6725826] vs [0.5368,0.4632], chisq 521.3353
## Mismatched frequencies for 'X:68379039' f[G,T] = [0.3059976,0.6940025] vs [0.4693,0.5307], chisq 319.3831
## Mismatched frequencies for 'X:68389129' f[G,A] = [0.3500612,0.6499388] vs [0.5413,0.4587], chisq 435.3437
## Mismatched frequencies for 'X:68414806' f[G,A] = [0.1119951,0.8880049] vs [0.3739,0.6261], chisq 895.2993
## Mismatched frequencies for 'X:68416088' f[T,C] = [0.1101591,0.8898409] vs [0.3704,0.6296], chisq 887.9242
## Mismatched frequencies for 'X:68422477' f[A,G] = [0.1560588,0.8439413] vs [0.4047,0.5953], chisq 777.5788
## Mismatched frequencies for 'X:68447052' f[A,G] = [0.1921665,0.8078336] vs [0.4255,0.5745], chisq 671.2808
## Mismatched frequencies for 'X:68452152' f[C,T] = [0.5079559,0.4920441] vs [0.6651,0.3349], chisq 322.6028
## Mismatched frequencies for 'X:68458859' f[C,T] = [0.3151775,0.6848225] vs [0.518,0.482], chisq 488.5702
## Mismatched frequencies for 'X:68477888' f[A,G] = [0.2062423,0.7937577] vs [0.4301,0.5699], chisq 615.2649
## Mismatched frequencies for 'X:68494318' f[A,G] = [0.3671971,0.632803] vs [0.5688,0.4312], chisq 487.6596
## Mismatched frequencies for 'X:68533584' f[T,C] = [0.06364749,0.9363525] vs [0.3311,0.6689], chisq 998.935
## Mismatched frequencies for 'X:68538608' f[A,G] = [0.2050184,0.7949817] vs [0.4336,0.5664], chisq 640.0635
## Mismatched frequencies for 'X:68543004' f[A,C] = [0.5348837,0.4651163] vs [0.6924,0.3076], chisq 337.4401
## Mismatched frequencies for 'X:68613835' f[C,A] = [0.05263158,0.9473684] vs [0.3345,0.6655], chisq 1105.361
## Mismatched frequencies for 'X:68687450' f[T,C] = [0.123623,0.876377] vs [0.3716,0.6284], chisq 803.7003
## Mismatched frequencies for 'X:68690089' f[G,A] = [0.3439412,0.6560587] vs [0.53,0.47], chisq 411.4218
## Mismatched frequencies for 'X:68747645' f[G,A] = [0.4149327,0.5850673] vs [0.5971,0.4029], chisq 404.5984
## Mismatched frequencies for 'X:68754737' f[C,A] = [0.624235,0.375765] vs [0.7629,0.2371], chisq 304.6642
## Mismatched frequencies for 'X:68774475' f[G,A] = [0.4210526,0.5789474] vs [0.6221,0.3779], chisq 501.6392
## Mismatched frequencies for 'X:68792240' f[T,C] = [0.2634639,0.7365361] vs [0.4686,0.5314], chisq 504.8599
## Mismatched frequencies for 'X:69121191' f[G,A] = [0.2301102,0.7698898] vs [0.4238,0.5762], chisq 461.8547
## Mismatched frequencies for 'X:69163134' f[G,A] = [0.03488372,0.9651163] vs [0.3198,0.6802], chisq 1161.811
## Mismatched frequencies for 'X:69286983' f[C,A] = [0.003059976,0.99694] vs [0.2876,0.7124], chisq 1244.549
## Mismatched frequencies for 'X:69385475' f[T,C] = [0.1621787,0.8378213] vs [0.4074,0.5926], chisq 754.0927
## Mismatched frequencies for 'X:69415250' f[A,C] = [0.03580171,0.9641983] vs [0.3059,0.6941], chisq 1071.65
## Mismatched frequencies for 'X:69491415' f[T,C] = [0.2111383,0.7888617] vs [0.4568,0.5432], chisq 729.3308
## Mismatched frequencies for 'X:69510335' f[C,T] = [0.01040392,0.9895961] vs [0.2853,0.7147], chisq 1165.709
## Mismatched frequencies for 'X:69510961' f[C,T] = [0.08873929,0.9112607] vs [0.3388,0.6612], chisq 859.0747
## Mismatched frequencies for 'X:69631496' f[A,C] = [0.4455324,0.5544676] vs [0.629,0.371], chisq 420.9796
## Mismatched frequencies for 'X:69652762' f[A,G] = [0.04283966,0.9571603] vs [0.317,0.683], chisq 1079.664
## Mismatched frequencies for 'X:69749852' f[A,G] = [0.03365973,0.9663402] vs [0.3174,0.6826], chisq 1157.545
## Mismatched frequencies for 'X:69793817' f[G,A] = [0.4179927,0.5820074] vs [0.6063,0.3937], chisq 434.9479
## Mismatched frequencies for 'X:69928830' f[T,C] = [0.2154223,0.7845777] vs [0.4403,0.5597], chisq 616.4885
## Mismatched frequencies for 'X:69937612' f[A,G] = [0.2949816,0.7050183] vs [0.5177,0.4823], chisq 589.1398
## Mismatched frequencies for 'X:69994057' f[A,G] = [0.2184823,0.7815177] vs [0.4385,0.5615], chisq 590.6619
## Mismatched frequencies for 'X:70093038' f[C,T] = [0.4742962,0.5257038] vs [0.6399,0.3601], chisq 347.3367
## Mismatched frequencies for 'X:70106555' f[G,C] = [0.0373317,0.9626683] vs [0.3154,0.6846], chisq 1115.078
## Mismatched frequencies for 'X:70119149' f[A,G] = [0.129743,0.870257] vs [0.3905,0.6095], chisq 869.3767
## Mismatched frequencies for 'X:70165798' f[G,C] = [0.04528764,0.9547124] vs [0.31,0.69], chisq 1019.31
## Mismatched frequencies for 'X:70173688' f[C,T] = [0.49694,0.50306] vs [0.6522,0.3478], chisq 309.9026
## Mismatched frequencies for 'X:70872967' f[T,C] = [0.1432068,0.8567932] vs [0.3917,0.6083], chisq 787.4419
## Mismatched frequencies for 'X:70882144' f[C,T] = [0.2686658,0.7313342] vs [0.5062,0.4938], chisq 670.7563
## Mismatched frequencies for 'X:71097678' f[T,C] = [0.05201959,0.9479804] vs [0.3512,0.6488], chisq 1213.721
## Mismatched frequencies for 'X:71113628' f[T,C] = [0.05691554,0.9430845] vs [0.3163,0.6837], chisq 965.1594
## Mismatched frequencies for 'X:71125466' f[C,T] = [0.124235,0.875765] vs [0.3783,0.6217], chisq 836.9483
## Mismatched frequencies for 'X:71156602' f[G,A] = [0.09853121,0.9014688] vs [0.3676,0.6324], chisq 953.9026
## Mismatched frequencies for 'X:71225152' f[C,T] = [0.03610771,0.9638923] vs [0.3272,0.6728], chisq 1196.73
## Mismatched frequencies for 'X:71239857' f[T,C] = [0.01713586,0.9828641] vs [0.3038,0.6962], chisq 1216.737
## Mismatched frequencies for 'X:71275525' f[G,C] = [0.1132191,0.8867809] vs [0.3751,0.6249], chisq 893.7237
## Mismatched frequencies for 'X:71334368' f[A,G] = [0.1432068,0.8567932] vs [0.4034,0.5966], chisq 853.5416
## Mismatched frequencies for 'X:71344303' f[T,C] = [0.2044064,0.7955936] vs [0.4506,0.5494], chisq 735.065
## Mismatched frequencies for 'X:71349753' f[G,A] = [0.2117503,0.7882497] vs [0.4627,0.5373], chisq 758.9606
## Mismatched frequencies for 'X:71349774' f[T,C] = [0.2044064,0.7955936] vs [0.4527,0.5473], chisq 746.8325
## Mismatched frequencies for 'X:71379702' f[T,C] = [0.256426,0.743574] vs [0.4934,0.5066], chisq 669.0924
## Mismatched frequencies for 'X:71388719' f[G,A] = [0.009791922,0.9902081] vs [0.9871,0.0129], chisq 30889.41
## Mismatched frequencies for 'X:71397788' f[C,T] = [0.253978,0.746022] vs [0.4921,0.5079], chisq 675.8117
## Mismatched frequencies for 'X:71401607' f[G,A] = [0.03916769,0.9608323] vs [0.3239,0.6761], chisq 1150.983
## Mismatched frequencies for 'X:71401614' f[C,A] = [0.03916769,0.9608323] vs [0.3238,0.6762], chisq 1150.377
## Mismatched frequencies for 'X:71507276' f[C,T] = [0.2239902,0.7760098] vs [0.4675,0.5325], chisq 712.8021
## Mismatched frequencies for 'X:71521867' f[G,C] = [0.1168911,0.8831089] vs [0.3693,0.6307], chisq 835.7193
## Mismatched frequencies for 'X:71532360' f[T,C] = [0.123011,0.876989] vs [0.3763,0.6237], chisq 833.8929
## Mismatched frequencies for 'X:71538575' f[T,C] = [0.2105263,0.7894737] vs [0.4659,0.5341], chisq 784.9077
## Mismatched frequencies for 'X:71544289' f[G,T] = [0.1370869,0.8629131] vs [0.3941,0.6059], chisq 840.8403
## Mismatched frequencies for 'X:71559393' f[A,G] = [0.1429008,0.8570991] vs [0.3945,0.6055], chisq 804.9923
## Mismatched frequencies for 'X:72209124' f[T,C] = [0.03059975,0.9694002] vs [0.2996,0.7004], chisq 1077.623
## Mismatched frequencies for 'X:72248827' f[G,T] = [0.3151775,0.6848225] vs [0.5219,0.4781], chisq 507.5575
## Mismatched frequencies for 'X:72262913' f[T,C] = [0.3151775,0.6848225] vs [0.5223,0.4777], chisq 509.5284
## Mismatched frequencies for 'X:72286111' f[G,A] = [0.249082,0.750918] vs [0.4629,0.5371], chisq 550.0397
## Mismatched frequencies for 'X:72344165' f[C,A] = [0.1468788,0.8531212] vs [0.384,0.616], chisq 722.5723
## Mismatched frequencies for 'X:72414164' f[T,G] = [0.1015912,0.8984088] vs [0.3544,0.6456], chisq 856.5986
## Mismatched frequencies for 'X:72458400' f[C,T] = [0.3445532,0.6554468] vs [0.5442,0.4558], chisq 474.6674
## Mismatched frequencies for 'X:72480526' f[C,T] = [0.1153611,0.8846389] vs [0.3636,0.6364], chisq 814.3206
## Mismatched frequencies for 'X:72508846' f[T,C] = [0.1159731,0.8840269] vs [0.3657,0.6343], chisq 821.8407
## Mismatched frequencies for 'X:72510820' f[A,G] = [0.06976744,0.9302326] vs [0.3211,0.6789], chisq 896.3546
## Mismatched frequencies for 'X:73190853' f[G,A] = [0.1193391,0.8806609] vs [0.3537,0.6463], chisq 735.0435
## Mismatched frequencies for 'X:73460618' f[T,C] = [0.05140759,0.9485924] vs [0.3111,0.6889], chisq 977.8282
## Mismatched frequencies for 'X:73543879' f[T,C] = [0.1064872,0.8935129] vs [0.3535,0.6465], chisq 818.2335
## Mismatched frequencies for 'X:73583771' f[C,T] = [0.1028152,0.8971849] vs [0.3563,0.6437], chisq 858.7945
## Mismatched frequencies for 'X:73644493' f[C,T] = [0.05813954,0.9418604] vs [0.3083,0.6917], chisq 911.0288
## Mismatched frequencies for 'X:73725976' f[C,A] = [0.2613219,0.7386781] vs [0.4951,0.5049], chisq 650.8831
## Mismatched frequencies for 'X:73749319' f[T,G] = [0.1878825,0.8121175] vs [0.4419,0.5581], chisq 787.166
## Mismatched frequencies for 'X:74100169' f[G,A] = [0.003059976,0.99694] vs [0.2819,0.7181], chisq 1210.834
## Mismatched frequencies for 'X:74290784' f[C,T] = [0.9332925,0.06670747] vs [0.9989,0.0011], chisq 1813.074
## Mismatched frequencies for 'X:74578900' f[C,T] = [0.02203182,0.9779682] vs [0.3089,0.6911], chisq 1205.042
## Mismatched frequencies for 'X:74884991' f[G,A] = [0.1768666,0.8231334] vs [0.4284,0.5716], chisq 779.3223
## Mismatched frequencies for 'X:75229863' f[C,T] = [0.376683,0.623317] vs [0.5721,0.4279], chisq 458.9424
## Mismatched frequencies for 'X:75260944' f[A,G] = [0.372093,0.627907] vs [0.5597,0.4403], chisq 421.0638
## Mismatched frequencies for 'X:75286200' f[G,A] = [0.2239902,0.7760098] vs [0.4569,0.5431], chisq 655.1402
## Mismatched frequencies for 'X:75287667' f[A,G] = [0.03243574,0.9675643] vs [0.3112,0.6888], chisq 1130.601
## Mismatched frequencies for 'X:75475093' f[T,G] = [0.9516524,0.04834761] vs [0.9952,0.0048], chisq 646.8349
## Mismatched frequencies for 'X:75530806' f[C,T] = [0.03243574,0.9675643] vs [0.3097,0.6903], chisq 1121.687
## Mismatched frequencies for 'X:75830162' f[T,C] = [0.2827417,0.7172583] vs [0.4647,0.5353], chisq 397.5112
## Mismatched frequencies for 'X:75907631' f[A,G] = [0.09057528,0.9094247] vs [0.3276,0.6724], chisq 785.5964
## Mismatched frequencies for 'X:76188415' f[T,C] = [0.1634027,0.8365973] vs [0.4187,0.5813], chisq 809.5411
## Mismatched frequencies for 'X:76240616' f[T,C] = [0.1744186,0.8255814] vs [0.4277,0.5723], chisq 790.7275
## Mismatched frequencies for 'X:76253913' f[T,C] = [0.131579,0.8684211] vs [0.3761,0.6239], chisq 776.5601
## Mismatched frequencies for 'X:76316148' f[A,G] = [0.3059976,0.6940025] vs [0.51,0.49], chisq 494.4188
## Mismatched frequencies for 'X:76349873' f[A,C] = [0.01713586,0.9828641] vs [0.2891,0.7109], chisq 1129.62
## Mismatched frequencies for 'X:76359165' f[G,A] = [0.1138311,0.8861689] vs [0.3563,0.6437], chisq 784.5898
## Mismatched frequencies for 'X:76400171' f[G,A] = [0.3090575,0.6909425] vs [0.5109,0.4891], chisq 483.97
## Mismatched frequencies for 'X:76473325' f[G,A] = [0.3445532,0.6554468] vs [0.544,0.456], chisq 473.6991
## Mismatched frequencies for 'X:76504010' f[G,A] = [0.3341493,0.6658507] vs [0.5318,0.4682], chisq 464.3208
## Mismatched frequencies for 'X:76591669' f[G,A] = [0.3353733,0.6646267] vs [0.5291,0.4709], chisq 445.9624
## Mismatched frequencies for 'X:76605082' f[A,C] = [0.03182375,0.9681762] vs [0.3061,0.6939], chisq 1105.496
## Mismatched frequencies for 'X:77541469' f[C,T] = [0.2129743,0.7870257] vs [0.4339,0.5661], chisq 597.4779
## Mismatched frequencies for 'X:77594717' f[C,T] = [0.2986536,0.7013464] vs [0.5127,0.4873], chisq 544.2418
## Mismatched frequencies for 'X:77635122' f[T,G] = [0.2319461,0.7680538] vs [0.4523,0.5477], chisq 587.4992
## Mismatched frequencies for 'X:77711036' f[A,G] = [0.2931457,0.7068543] vs [0.5108,0.4892], chisq 562.8242
## Mismatched frequencies for 'X:77770928' f[T,C] = [0.06119951,0.9388005] vs [0.3089,0.6911], chisq 891.6547
## Mismatched frequencies for 'X:77886291' f[G,A] = [0.09118727,0.9088127] vs [0.3518,0.6482], chisq 914.9629
## Mismatched frequencies for 'X:77938635' f[A,G] = [0.003671971,0.9963281] vs [0.2849,0.7151], chisq 1223.019
## Mismatched frequencies for 'X:78210388' f[A,G] = [0.1511628,0.8488372] vs [0.3738,0.6262], chisq 644.0273
## Mismatched frequencies for 'X:78526590' f[T,G] = [0.5556915,0.4443085] vs [0.7045,0.2955], chisq 307.8712
## Mismatched frequencies for 'X:78614083' f[T,C] = [0.1413709,0.8586291] vs [0.3623,0.6377], chisq 643.915
## Mismatched frequencies for 'X:78630857' f[T,C] = [0.05875153,0.9412485] vs [0.3128,0.6872], chisq 931.5224
## Mismatched frequencies for 'X:78649193' f[C,T] = [0.4008568,0.5991432] vs [0.5865,0.4135], chisq 417.3796
## Mismatched frequencies for 'X:78843413' f[A,G] = [0.378213,0.621787] vs [0.542,0.458], chisq 319.5387
## Mismatched frequencies for 'X:78932289' f[G,A] = [0.4308445,0.5691555] vs [0.6056,0.3944], chisq 374.7461
## Mismatched frequencies for 'X:79079041' f[A,G] = [0.1116891,0.8883109] vs [0.379,0.621], chisq 927.0943
## Mismatched frequencies for 'X:79114521' f[A,G] = [0.3023256,0.6976744] vs [0.5205,0.4795], chisq 565.3303
## Mismatched frequencies for 'X:79143384' f[G,A] = [0.2851897,0.7148102] vs [0.4965,0.5035], chisq 531.4241
## Mismatched frequencies for 'X:79485731' f[A,G] = [0.3078335,0.6921664] vs [0.5121,0.4879], chisq 495.6366
## Mismatched frequencies for 'X:79509262' f[G,A] = [0.3121175,0.6878825] vs [0.5195,0.4805], chisq 510.7858
## Mismatched frequencies for 'X:79698593' f[C,G] = [0.3053856,0.6946145] vs [0.5123,0.4877], chisq 508.5714
## Mismatched frequencies for 'X:80072758' f[G,A] = [0.3096695,0.6903305] vs [0.5382,0.4618], chisq 621.0159
## Mismatched frequencies for 'X:80128689' f[C,T] = [0.07833537,0.9216647] vs [0.3396,0.6604], chisq 938.1397
## Mismatched frequencies for 'X:80272022' f[T,C] = [0.2282742,0.7717258] vs [0.4532,0.5468], chisq 611.9687
## Mismatched frequencies for 'X:80307705' f[C,T] = [0.2288862,0.7711138] vs [0.4553,0.5447], chisq 619.4344
## Mismatched frequencies for 'X:80603124' f[C,T] = [0.3482252,0.6517748] vs [0.5537,0.4463], chisq 503.8874
## Mismatched frequencies for 'X:80622873' f[T,G] = [0.3151775,0.6848225] vs [0.5334,0.4666], chisq 565.9882
## Mismatched frequencies for 'X:80653531' f[G,A] = [0.3078335,0.6921664] vs [0.5281,0.4719], chisq 576.3694
## Mismatched frequencies for 'X:80666423' f[G,A] = [0.1554467,0.8445532] vs [0.3777,0.6223], chisq 638.6276
## Mismatched frequencies for 'X:80803089' f[G,T] = [0.04406365,0.9559364] vs [0.3053,0.6947], chisq 1002.026
## Mismatched frequencies for 'X:80856643' f[A,G] = [0.3041616,0.6958384] vs [0.528,0.472], chisq 595.1986
## Mismatched frequencies for 'X:80913284' f[C,A] = [0.3035496,0.6964504] vs [0.5284,0.4716], chisq 600.6041
## Mismatched frequencies for 'X:80947705' f[C,T] = [0.3047736,0.6952264] vs [0.5312,0.4688], chisq 609.1717
## Mismatched frequencies for 'X:81171086' f[T,C] = [0.3482252,0.6517748] vs [0.5389,0.4611], chisq 432.5952
## Mismatched frequencies for 'X:81194812' f[T,C] = [0.3476132,0.6523868] vs [0.5378,0.4622], chisq 430.3076
## Mismatched frequencies for 'X:81308952' f[G,C] = [0.1572827,0.8427172] vs [0.3795,0.6205], chisq 637.003
## Mismatched frequencies for 'X:81827765' f[T,G] = [0.493268,0.5067319] vs [0.6473,0.3527], chisq 303.3143
## Mismatched frequencies for 'X:81845659' f[T,G] = [0.1352509,0.8647491] vs [0.3799,0.6201], chisq 773.6716
## Mismatched frequencies for 'X:82054940' f[A,G] = [0.4375765,0.5624235] vs [0.5989,0.4011], chisq 318.1029
## Mismatched frequencies for 'X:82082133' f[G,A] = [0.4216646,0.5783353] vs [0.5889,0.4111], chisq 339.5204
## Mismatched frequencies for 'X:82216507' f[C,A] = [0.0624235,0.9375765] vs [0.3217,0.6783], chisq 954.1455
## Mismatched frequencies for 'X:82330656' f[T,C] = [0.3304774,0.6695226] vs [0.5252,0.4748], chisq 450.4245
## Mismatched frequencies for 'X:82954490' f[C,T] = [0.1517748,0.8482252] vs [0.401,0.599], chisq 784.2262
## Mismatched frequencies for 'X:83015739' f[T,C] = [0.3445532,0.6554468] vs [0.5507,0.4493], chisq 506.7723
## Mismatched frequencies for 'X:83068926' f[T,C] = [0.125459,0.874541] vs [0.3593,0.6407], chisq 725.6933
## Mismatched frequencies for 'X:83156564' f[G,A] = [0.254896,0.745104] vs [0.4603,0.5397], chisq 508.0363
## Mismatched frequencies for 'X:83352970' f[T,C] = [0.126683,0.873317] vs [0.373,0.627], chisq 791.3517
## Mismatched frequencies for 'X:83509098' f[G,A] = [0.126071,0.873929] vs [0.3656,0.6344], chisq 755.2146
## Mismatched frequencies for 'X:83562000' f[A,G] = [0.09302325,0.9069768] vs [0.3439,0.6561], chisq 857.4512
## Mismatched frequencies for 'X:83696884' f[C,A] = [0.4651163,0.5348837] vs [0.6414,0.3586], chisq 393.8013
## Mismatched frequencies for 'X:83789203' f[C,T] = [0.7093023,0.2906977] vs [0.9983,0.0017], chisq 9071.757
## Mismatched frequencies for 'X:83797361' f[C,T] = [0.3623011,0.6376989] vs [0.5649,0.4351], chisq 491.7228
## Mismatched frequencies for 'X:83809094' f[T,C] = [0.3610771,0.6389229] vs [0.5622,0.4378], chisq 484.1322
## Mismatched frequencies for 'X:83809649' f[A,G] = [0.06915545,0.9308445] vs [0.3375,0.6625], chisq 994.3687
## Mismatched frequencies for 'X:83924645' f[G,A] = [0.1627907,0.8372093] vs [0.3814,0.6186], chisq 614.8218
## Mismatched frequencies for 'X:84140833' f[G,T] = [0.131579,0.8684211] vs [0.3826,0.6174], chisq 812.3799
## Mismatched frequencies for 'X:84159052' f[C,T] = [0.3317013,0.6682987] vs [0.5111,0.4889], chisq 382.2798
## Mismatched frequencies for 'X:84239175' f[G,A] = [0.3194614,0.6805385] vs [0.5016,0.4984], chisq 394.3591
## Mismatched frequencies for 'X:84272263' f[T,C] = [0.3237454,0.6762546] vs [0.5042,0.4958], chisq 386.9839
## Mismatched frequencies for 'X:84363140' f[A,G] = [0.3255814,0.6744186] vs [0.4985,0.5015], chisq 355.5482
## Mismatched frequencies for 'X:84380619' f[A,G] = [0.371481,0.628519] vs [0.5441,0.4559], chisq 355.0308
## Mismatched frequencies for 'X:84408111' f[A,G] = [0.3629131,0.6370869] vs [0.5339,0.4661], chisq 347.696
## Mismatched frequencies for 'X:84465089' f[G,A] = [0.05079559,0.9492044] vs [0.3033,0.6967], chisq 938.6042
## Mismatched frequencies for 'X:84475720' f[C,A] = [0.2392901,0.7607099] vs [0.4311,0.5689], chisq 450.4162
## Mismatched frequencies for 'X:84563135' f[T,A] = [0.2356181,0.7643819] vs [0.4238,0.5762], chisq 435.7902
## Mismatched frequencies for 'X:84625516' f[A,C] = [0.2203182,0.7796817] vs [0.4182,0.5818], chisq 484.3914
## Mismatched frequencies for 'X:84694918' f[C,A] = [0.2209302,0.7790698] vs [0.4355,0.5645], chisq 562.7318
## Mismatched frequencies for 'X:84751227' f[C,A] = [0.6872705,0.3127295] vs [0.8161,0.1839], chisq 313.1039
## Mismatched frequencies for 'X:84991524' f[T,G] = [0.2099143,0.7900857] vs [0.4231,0.5769], chisq 560.6081
## Mismatched frequencies for 'X:85037643' f[A,C] = [0.03916769,0.9608323] vs [0.2947,0.7053], chisq 980.6043
## Mismatched frequencies for 'X:85125119' f[G,A] = [0.2974296,0.7025704] vs [0.4895,0.5105], chisq 439.5265
## Mismatched frequencies for 'X:85393785' f[T,C] = [0.2190942,0.7809057] vs [0.4484,0.5516], chisq 637.9257
## Mismatched frequencies for 'X:85450867' f[A,G] = [0.4277846,0.5722154] vs [0.5994,0.4006], chisq 359.8759
## Mismatched frequencies for 'X:85528423' f[C,A] = [0.4045288,0.5954713] vs [0.5755,0.4245], chisq 352.2177
## Mismatched frequencies for 'X:85581014' f[T,C] = [0.4277846,0.5722154] vs [0.5973,0.4027], chisq 350.6666
## Mismatched frequencies for 'X:85633748' f[G,A] = [0.4216646,0.5783353] vs [0.5892,0.4108], chisq 340.7957
## Mismatched frequencies for 'X:85639348' f[T,C] = [0.3555692,0.6444308] vs [0.5394,0.4606], chisq 402.1779
## Mismatched frequencies for 'X:85704658' f[T,G] = [0.2919217,0.7080783] vs [0.4912,0.5088], chisq 473.0255
## Mismatched frequencies for 'X:85752102' f[C,T] = [0.249694,0.750306] vs [0.4582,0.5418], chisq 524.1011
## Mismatched frequencies for 'X:85850711' f[A,C] = [0.04773562,0.9522644] vs [0.307,0.693], chisq 982.9766
## Mismatched frequencies for 'X:85929478' f[G,T] = [0.2025704,0.7974296] vs [0.4277,0.5723], chisq 623.4653
## Mismatched frequencies for 'X:85938457' f[G,A] = [0.2111383,0.7888617] vs [0.4302,0.5698], chisq 588.9476
## Mismatched frequencies for 'X:86131772' f[T,C] = [0.1493268,0.8506732] vs [0.3949,0.6051], chisq 766.095
## Mismatched frequencies for 'X:86192003' f[G,T] = [0.2949816,0.7050183] vs [0.4837,0.5163], chisq 424.8963
## Mismatched frequencies for 'X:86208976' f[T,C] = [0.08629131,0.9137087] vs [0.3271,0.6729], chisq 812.1384
## Mismatched frequencies for 'X:86212793' f[T,C] = [0.2790698,0.7209302] vs [0.4667,0.5333], chisq 422.4208
## Mismatched frequencies for 'X:86423568' f[G,T] = [0.03427173,0.9657283] vs [0.3027,0.6973], chisq 1065.518
## Mismatched frequencies for 'X:86560925' f[T,C] = [0.1395349,0.8604651] vs [0.38,0.62], chisq 746.9891
## Mismatched frequencies for 'X:86611721' f[A,G] = [0.1572827,0.8427172] vs [0.3966,0.6034], chisq 725.776
## Mismatched frequencies for 'X:86652039' f[A,G] = [0.2943696,0.7056304] vs [0.4973,0.5027], chisq 489.975
## Mismatched frequencies for 'X:86742460' f[C,T] = [0.1946144,0.8053855] vs [0.4205,0.5795], chisq 631.3295
## Mismatched frequencies for 'X:86811737' f[C,T] = [0.2386781,0.7613219] vs [0.4323,0.5677], chisq 458.6302
## Mismatched frequencies for 'X:86889557' f[T,C] = [0.246022,0.753978] vs [0.4641,0.5359], chisq 571.9641
## Mismatched frequencies for 'X:86960216' f[T,C] = [0.1713586,0.8286414] vs [0.4162,0.5838], chisq 745.6032
## Mismatched frequencies for 'X:87042698' f[T,C] = [0.130355,0.8696451] vs [0.383,0.617], chisq 822.6734
## Mismatched frequencies for 'X:87065831' f[C,T] = [0.2766218,0.7233782] vs [0.4726,0.5274], chisq 459.9308
## Mismatched frequencies for 'X:87113324' f[G,T] = [0.09179927,0.9082007] vs [0.3437,0.6563], chisq 864.8825
## Mismatched frequencies for 'X:87144045' f[C,T] = [0.2711138,0.7288862] vs [0.4714,0.5286], chisq 480.6584
## Mismatched frequencies for 'X:87220675' f[C,T] = [0.3219094,0.6780906] vs [0.5261,0.4739], chisq 495.2921
## Mismatched frequencies for 'X:87513306' f[A,G] = [0.05813954,0.9418604] vs [0.3161,0.6839], chisq 954.725
## Mismatched frequencies for 'X:87537213' f[T,C] = [0.1854345,0.8145655] vs [0.4386,0.5614], chisq 783.615
## Mismatched frequencies for 'X:87665920' f[C,A] = [0.4020808,0.5979192] vs [0.5771,0.4229], chisq 369.3166
## Mismatched frequencies for 'X:87681770' f[T,C] = [0.4559363,0.5440636] vs [0.6213,0.3787], chisq 340.106
## Mismatched frequencies for 'X:87699794' f[G,A] = [0.379437,0.620563] vs [0.5417,0.4583], chisq 313.6091
## Mismatched frequencies for 'X:87710745' f[A,G] = [0.05079559,0.9492044] vs [0.3009,0.6991], chisq 925.2653
## Mismatched frequencies for 'X:87810629' f[A,G] = [0.2864137,0.7135863] vs [0.4984,0.5016], chisq 534.6569
## Mismatched frequencies for 'X:88008423' f[A,C] = [0.1370869,0.8629131] vs [0.3722,0.6278], chisq 720.786
## Mismatched frequencies for 'X:88016385' f[C,T] = [0.4155447,0.5844553] vs [0.584,0.416], chisq 343.4911
## Mismatched frequencies for 'X:88028744' f[T,C] = [0.1376989,0.8623011] vs [0.3723,0.6277], chisq 717.5122
## Mismatched frequencies for 'X:88089953' f[G,A] = [0.3347613,0.6652387] vs [0.5353,0.4647], chisq 478.179
## Mismatched frequencies for 'X:88127730' f[G,A] = [0.2093023,0.7906977] vs [0.4328,0.5672], chisq 612.0563
## Mismatched frequencies for 'X:88154167' f[G,A] = [0.09424724,0.9057528] vs [0.3568,0.6432], chisq 921.7935
## Mismatched frequencies for 'X:88246726' f[C,T] = [0.3512852,0.6487148] vs [0.538,0.462], chisq 414.7754
## Mismatched frequencies for 'X:88272497' f[A,G] = [0.4259486,0.5740514] vs [0.5969,0.4031], chisq 356.5059
## Mismatched frequencies for 'X:88303033' f[C,A] = [0.376989,0.623011] vs [0.546,0.454], chisq 340.5242
## Mismatched frequencies for 'X:88326079' f[G,A] = [0.01897185,0.9810281] vs [0.2904,0.7096], chisq 1121.513
## Mismatched frequencies for 'X:88447984' f[A,T] = [0.05752754,0.9424725] vs [0.3198,0.6802], chisq 980.4623
## Mismatched frequencies for 'X:88469506' f[C,T] = [0.05813954,0.9418604] vs [0.3188,0.6812], chisq 970.0715
## Mismatched frequencies for 'X:88498119' f[A,G] = [0.4014688,0.5985312] vs [0.6216,0.3784], chisq 600.2367
## Mismatched frequencies for 'X:88526520' f[A,G] = [0.02141983,0.9785802] vs [0.2926,0.7074], chisq 1113.543
## Mismatched frequencies for 'X:88568457' f[T,C] = [0.06609547,0.9339045] vs [0.3181,0.6819], chisq 906.55
## Mismatched frequencies for 'X:88748498' f[G,T] = [0.1536108,0.8463892] vs [0.4016,0.5984], chisq 775.8956
## Mismatched frequencies for 'X:88781779' f[T,G] = [0.02631579,0.9736842] vs [0.2975,0.7025], chisq 1100.936
## Mismatched frequencies for 'X:88791705' f[T,C] = [0.5752754,0.4247246] vs [0.7812,0.2188], chisq 694.9971
## Mismatched frequencies for 'X:88801579' f[G,A] = [0.2062423,0.7937577] vs [0.4524,0.5476], chisq 734.0823
## Mismatched frequencies for 'X:88852134' f[C,T] = [0.08078335,0.9192166] vs [0.3538,0.6462], chisq 1002.779
## Mismatched frequencies for 'X:88859595' f[A,G] = [0.1064872,0.8935129] vs [0.3659,0.6341], chisq 887.6797
## Mismatched frequencies for 'X:88900692' f[C,A] = [0.247858,0.752142] vs [0.4519,0.5481], chisq 503.4369
## Mismatched frequencies for 'X:88941652' f[C,T] = [0.121787,0.878213] vs [0.3794,0.6206], chisq 859.6456
## Mismatched frequencies for 'X:88947747' f[C,T] = [0.1175031,0.8824969] vs [0.373,0.627], chisq 852.3788
## Mismatched frequencies for 'X:88970308' f[G,A] = [0.05263158,0.9473684] vs [0.321,0.679], chisq 1025.28
## Mismatched frequencies for 'X:89025830' f[T,G] = [0.874541,0.125459] vs [0.9574,0.0426], chisq 427.7273
## Mismatched frequencies for 'X:89102166' f[G,A] = [0.1903305,0.8096695] vs [0.409,0.591], chisq 597.3351
## Mismatched frequencies for 'X:89125471' f[A,G] = [0.1738066,0.8261934] vs [0.3929,0.6071], chisq 609.5085
## Mismatched frequencies for 'X:89135541' f[G,A] = [0.7705019,0.2294982] vs [0.9255,0.0745], chisq 882.7122
## Mismatched frequencies for 'X:89156036' f[A,G] = [0.1756426,0.8243574] vs [0.3946,0.6054], chisq 607.6282
## Mismatched frequencies for 'X:89177673' f[G,A] = [0.3268054,0.6731946] vs [0.506,0.494], chisq 381.5325
## Mismatched frequencies for 'X:89276219' f[T,C] = [0.01897185,0.9810281] vs [0.2903,0.7097], chisq 1120.932
## Mismatched frequencies for 'X:89276776' f[G,A] = [0.1015912,0.8984088] vs [0.3479,0.6521], chisq 820.6276
## Mismatched frequencies for 'X:89303998' f[T,C] = [0.380049,0.6199511] vs [0.5822,0.4178], chisq 493.3511
## Mismatched frequencies for 'X:89329447' f[T,C] = [0.03855569,0.9614443] vs [0.3117,0.6883], chisq 1083.173
## Mismatched frequencies for 'X:89360687' f[A,G] = [0.376377,0.623623] vs [0.5897,0.4103], chisq 551.3332
## Mismatched frequencies for 'X:89397011' f[A,C] = [0.4406365,0.5593635] vs [0.605,0.395], chisq 331.5885
## Mismatched frequencies for 'X:89463365' f[T,C] = [0.06058751,0.9394125] vs [0.3211,0.6789], chisq 964.5949
## Mismatched frequencies for 'X:89655321' f[G,T] = [0.2986536,0.7013464] vs [0.4911,0.5089], chisq 441.098
## Mismatched frequencies for 'X:89804127' f[A,G] = [0.2282742,0.7717258] vs [0.4445,0.5555], chisq 568.153
## Mismatched frequencies for 'X:89933021' f[C,T] = [0.01101591,0.9889841] vs [0.9883,0.0117], chisq 31213.51
## Mismatched frequencies for 'X:90061256' f[C,T] = [0.006731946,0.9932681] vs [0.9314,0.0686], chisq 19573.63
## Mismatched frequencies for 'X:90124163' f[T,C] = [0.3635251,0.6364749] vs [0.7774,0.2226], chisq 2640.491
## Mismatched frequencies for 'X:90137337' f[G,T] = [0.04773562,0.9522644] vs [0.3029,0.6971], chisq 959.8311
## Mismatched frequencies for 'X:90138507' f[A,G] = [0.3506732,0.6493268] vs [0.5386,0.4614], chisq 420.2124
## Mismatched frequencies for 'X:90190233' f[C,A] = [0.5550796,0.4449205] vs [0.8002,0.1998], chisq 1032.193
## Mismatched frequencies for 'X:90347546' f[A,G] = [0.3831089,0.6168911] vs [0.5422,0.4578], chisq 301.5199
## Mismatched frequencies for 'X:90394269' f[C,G] = [0.3286414,0.6713586] vs [0.5122,0.4878], chisq 400.2029
## Mismatched frequencies for 'X:90397644' f[A,G] = [0.372705,0.627295] vs [0.5574,0.4426], chisq 407.8163
## Mismatched frequencies for 'X:90410634' f[G,A] = [0.3231334,0.6768666] vs [0.5222,0.4778], chisq 470.6722
## Mismatched frequencies for 'X:90422974' f[A,C] = [0.6419828,0.3580172] vs [0.8318,0.1682], chisq 707.8903
## Mismatched frequencies for 'X:90658632' f[T,C] = [0.371481,0.628519] vs [0.549,0.451], chisq 375.8831
## Mismatched frequencies for 'X:90917367' f[T,G] = [0.3883109,0.6116891] vs [0.5616,0.4384], chisq 359.657
## Mismatched frequencies for 'X:91020390' f[T,C] = [0.03427173,0.9657283] vs [0.2958,0.7042], chisq 1025.855
## Mismatched frequencies for 'X:91345831' f[A,G] = [0.2760098,0.7239902] vs [0.4702,0.5298], chisq 451.9554
## Mismatched frequencies for 'X:91428477' f[C,A] = [0.3965728,0.6034272] vs [0.5675,0.4325], chisq 350.7644
## Mismatched frequencies for 'X:91452896' f[T,C] = [0.0373317,0.9626683] vs [0.3298,0.6702], chisq 1202.461
## Mismatched frequencies for 'X:91477739' f[C,T] = [0.1933905,0.8066096] vs [0.4243,0.5757], chisq 657.9212
## Mismatched frequencies for 'X:91517038' f[A,C] = [0.2138923,0.7861077] vs [0.461,0.539], chisq 736.3908
## Mismatched frequencies for 'X:91541188' f[T,C] = [0.2074663,0.7925336] vs [0.4368,0.5632], chisq 642.8578
## Mismatched frequencies for 'X:91570046' f[A,G] = [0.02264382,0.9773562] vs [0.2934,0.7066], chisq 1107.867
## Mismatched frequencies for 'X:91640119' f[A,G] = [0.5073439,0.4926561] vs [0.6632,0.3368], chisq 316.5921
## Mismatched frequencies for 'X:91658048' f[A,C] = [0.119645,0.8803549] vs [0.3668,0.6332], chisq 803.5093
## Mismatched frequencies for 'X:91687416' f[A,C] = [0.2178702,0.7821298] vs [0.4351,0.5649], chisq 577.0284
## Mismatched frequencies for 'X:91704963' f[T,C] = [0.2239902,0.7760098] vs [0.4488,0.5512], chisq 612.8624
## Mismatched frequencies for 'X:91707918' f[A,C] = [0.6370869,0.3629131] vs [0.7944,0.2056], chisq 428.2206
## Mismatched frequencies for 'X:91782965' f[G,T] = [0.0257038,0.9742962] vs [0.299,0.701], chisq 1114.822
## Mismatched frequencies for 'X:91795415' f[G,A] = [0.3843329,0.615667] vs [0.5434,0.4566], chisq 301.5111
## Mismatched frequencies for 'X:91899066' f[A,C] = [0.4920441,0.5079559] vs [0.6537,0.3463], chisq 336.3305
## Mismatched frequencies for 'X:91945777' f[T,C] = [0.5722154,0.4277846] vs [0.7303,0.2697], chisq 364.786
## Mismatched frequencies for 'X:91946844' f[G,T] = [0.5777234,0.4222766] vs [0.8261,0.1739], chisq 1159.63
## Mismatched frequencies for 'X:91991854' f[A,G] = [0.3378213,0.6621787] vs [0.5246,0.4754], chisq 414.4261
## Mismatched frequencies for 'X:92102468' f[G,A] = [0.3488372,0.6511628] vs [0.6362,0.3638], chisq 1030.551
## Mismatched frequencies for 'X:92103217' f[C,T] = [0.3482252,0.6517748] vs [0.5444,0.4556], chisq 458.3513
## Mismatched frequencies for 'X:92128217' f[T,C] = [0.3457772,0.6542228] vs [0.5444,0.4556], chisq 469.8396
## Mismatched frequencies for 'X:92128826' f[G,C] = [0.3476132,0.6523868] vs [0.5442,0.4558], chisq 460.2555
## Mismatched frequencies for 'X:92133307' f[G,A] = [0.3831089,0.6168911] vs [0.5546,0.4454], chisq 351.4117
## Mismatched frequencies for 'X:92136228' f[A,G] = [0.5244798,0.4755202] vs [0.6763,0.3237], chisq 306.0421
## Mismatched frequencies for 'X:92239004' f[G,C] = [0.08261934,0.9173807] vs [0.326,0.674], chisq 831.628
## Mismatched frequencies for 'X:92357401' f[G,A] = [0.09853121,0.9014688] vs [0.3765,0.6235], chisq 1006.997
## Mismatched frequencies for 'X:92392650' f[C,T] = [0.09547123,0.9045287] vs [0.368,0.632], chisq 978.4787
## Mismatched frequencies for 'X:92417576' f[T,C] = [0.05997552,0.9400245] vs [0.3444,0.6556], chisq 1106.806
## Mismatched frequencies for 'X:92421113' f[C,T] = [0.06854345,0.9314566] vs [0.3494,0.6506], chisq 1069.815
## Mismatched frequencies for 'X:92468672' f[T,C] = [0.4706242,0.5293758] vs [0.6358,0.3642], chisq 344.0807
## Mismatched frequencies for 'X:92568120' f[A,G] = [0.1028152,0.8971849] vs [0.3605,0.6395], chisq 882.4875
## Mismatched frequencies for 'X:92576361' f[C,T] = [0.1884945,0.8115055] vs [0.4397,0.5603], chisq 770.8473
## Mismatched frequencies for 'X:92927634' f[G,C] = [0.3421053,0.6578947] vs [0.5464,0.4536], chisq 497.2162
## Mismatched frequencies for 'X:92947672' f[C,T] = [0.3433292,0.6566707] vs [0.5436,0.4564], chisq 477.5746
## Mismatched frequencies for 'X:92952292' f[A,C] = [0.2123623,0.7876377] vs [0.4414,0.5586], chisq 639.2063
## Mismatched frequencies for 'X:92956349' f[C,A] = [0.4626683,0.5373317] vs [0.635,0.365], chisq 373.9854
## Mismatched frequencies for 'X:93222536' f[T,C] = [0.4565483,0.5434517] vs [0.6127,0.3873], chisq 301.2655
## Mismatched frequencies for 'X:93225725' f[G,T] = [0.2059364,0.7940636] vs [0.4305,0.5695], chisq 618.9966
## Mismatched frequencies for 'X:93285005' f[C,A] = [0.1927784,0.8072215] vs [0.4243,0.5757], chisq 661.4431
## Mismatched frequencies for 'X:93310514' f[A,G] = [0.03427173,0.9657283] vs [0.3166,0.6834], chisq 1147.611
## Mismatched frequencies for 'X:93319894' f[G,A] = [0.2729498,0.7270502] vs [0.4897,0.5103], chisq 560.0051
## Mismatched frequencies for 'X:93346524' f[T,C] = [0.2197062,0.7802938] vs [0.4606,0.5394], chisq 699.7619
## Mismatched frequencies for 'X:93350616' f[C,T] = [0.3011016,0.6988984] vs [0.4936,0.5064], chisq 441.1136
## Mismatched frequencies for 'X:93471491' f[G,C] = [0.09547123,0.9045287] vs [0.3514,0.6486], chisq 882.3304
## Mismatched frequencies for 'X:93508164' f[T,C] = [0.1750306,0.8249694] vs [0.4264,0.5736], chisq 779.5337
## Mismatched frequencies for 'X:93524150' f[A,G] = [0.007343941,0.9926561] vs [0.2942,0.7058], chisq 1245.513
## Mismatched frequencies for 'X:93528070' f[C,A] = [0.009791922,0.9902081] vs [0.2958,0.7042], chisq 1233.283
## Mismatched frequencies for 'X:93529491' f[C,T] = [0.008567931,0.9914321] vs [0.3017,0.6983], chisq 1279.95
## Mismatched frequencies for 'X:93531409' f[G,A] = [0.008567931,0.9914321] vs [0.3017,0.6983], chisq 1279.95
## Mismatched frequencies for 'X:93532839' f[G,T] = [0.008567931,0.9914321] vs [0.3014,0.6986], chisq 1278.119
## Mismatched frequencies for 'X:93602161' f[G,T] = [0.380049,0.6199511] vs [0.5614,0.4386], chisq 393.7653
## Mismatched frequencies for 'X:93614026' f[T,C] = [0.378825,0.621175] vs [0.5566,0.4434], chisq 377.809
## Mismatched frequencies for 'X:93647329' f[C,A] = [0.3815789,0.6184211] vs [0.8329,0.1671], chisq 3666.464
## Mismatched frequencies for 'X:93722367' f[A,G] = [0.119951,0.8800489] vs [0.3625,0.6375], chisq 778.0578
## Mismatched frequencies for 'X:94056870' f[T,C] = [0.1438189,0.8561811] vs [0.386,0.614], chisq 752.3686
## Mismatched frequencies for 'X:94069533' f[A,C] = [0.2576499,0.74235] vs [0.4503,0.5497], chisq 448.9279
## Mismatched frequencies for 'X:94072741' f[T,C] = [0.2992656,0.7007344] vs [0.4936,0.5064], chisq 449.5827
## Mismatched frequencies for 'X:94114429' f[T,C] = [0.03243574,0.9675643] vs [0.304,0.696], chisq 1088.129
## Mismatched frequencies for 'X:94226567' f[A,G] = [0.4651163,0.5348837] vs [0.6291,0.3709], chisq 336.9175
## Mismatched frequencies for 'X:94252539' f[A,G] = [0.501224,0.498776] vs [0.6663,0.3337], chisq 356.2165
## Mismatched frequencies for 'X:94260105' f[C,A] = [0.5416157,0.4583843] vs [0.7003,0.2997], chisq 346.9689
## Mismatched frequencies for 'X:94275569' f[A,G] = [0.003059976,0.99694] vs [0.2907,0.7093], chisq 1263.085
## Mismatched frequencies for 'X:94535408' f[C,T] = [0.3255814,0.6744186] vs [0.5251,0.4749], chisq 472.8708
## Mismatched frequencies for 'X:94770092' f[C,A] = [0.2778458,0.7221542] vs [0.4852,0.5148], chisq 512.9847
## Mismatched frequencies for 'X:94827219' f[C,T] = [0.0501836,0.9498164] vs [0.3066,0.6934], chisq 961.7861
## Mismatched frequencies for 'X:94861142' f[G,T] = [0.06119951,0.9388005] vs [0.3288,0.6712], chisq 1004.292
## Mismatched frequencies for 'X:95048068' f[C,T] = [0.4424725,0.5575275] vs [0.6099,0.3901], chisq 345.2835
## Mismatched frequencies for 'X:95055676' f[C,A] = [0.05569155,0.9443085] vs [0.3162,0.6838], chisq 973.9385
## Mismatched frequencies for 'X:95086705' f[G,T] = [0.2405141,0.7594859] vs [0.4783,0.5217], chisq 676.6396
## Mismatched frequencies for 'X:95100266' f[T,C] = [0.3255814,0.6744186] vs [0.5439,0.4561], chisq 567.3775
## Mismatched frequencies for 'X:95110543' f[C,A] = [0.122399,0.877601] vs [0.3698,0.6302], chisq 801.8452
## Mismatched frequencies for 'X:95140595' f[C,T] = [0.2417381,0.7582619] vs [0.4818,0.5182], chisq 688.8909
## Mismatched frequencies for 'X:95161121' f[A,G] = [0.128519,0.871481] vs [0.3754,0.6246], chisq 792.5539
## Mismatched frequencies for 'X:95173812' f[G,A] = [0.2802938,0.7197062] vs [0.501,0.499], chisq 579.3793
## Mismatched frequencies for 'X:95231526' f[C,T] = [0.1523868,0.8476132] vs [0.3987,0.6013], chisq 767.6376
## Mismatched frequencies for 'X:95291414' f[T,C] = [0.2380661,0.7619339] vs [0.483,0.517], chisq 716.9628
## Mismatched frequencies for 'X:95292076' f[A,G] = [0.1578947,0.8421053] vs [0.395,0.605], chisq 713.4937
## Mismatched frequencies for 'X:95294529' f[G,A] = [0.1615667,0.8384333] vs [0.423,0.577], chisq 846.2023
## Mismatched frequencies for 'X:95328176' f[G,A] = [0.01897185,0.9810281] vs [0.2921,0.7079], chisq 1131.419
## Mismatched frequencies for 'X:95521025' f[T,C] = [0.06058751,0.9394125] vs [0.3278,0.6722], chisq 1003.175
## Mismatched frequencies for 'X:95543588' f[C,T] = [0.2809058,0.7190943] vs [0.5063,0.4937], chisq 603.8591
## Mismatched frequencies for 'X:95736453' f[T,C] = [0.2056304,0.7943696] vs [0.4545,0.5455], chisq 749.5628
## Mismatched frequencies for 'X:95766259' f[T,C] = [0.2031824,0.7968176] vs [0.4432,0.5568], chisq 701.5988
## Mismatched frequencies for 'X:95803439' f[T,C] = [0.04039168,0.9596083] vs [0.3136,0.6864], chisq 1079.435
## Mismatched frequencies for 'X:95804106' f[A,G] = [0.07160342,0.9283966] vs [0.3332,0.6668], chisq 951.1417
## Mismatched frequencies for 'X:95820513' f[A,G] = [0.1768666,0.8231334] vs [0.4129,0.5871], chisq 694.4826
## Mismatched frequencies for 'X:95833558' f[T,G] = [0.02876377,0.9712362] vs [0.3013,0.6987], chisq 1102.724
## Mismatched frequencies for 'X:95850861' f[T,C] = [0.5348837,0.4651163] vs [0.6878,0.3122], chisq 315.8916
## Mismatched frequencies for 'X:95860898' f[A,G] = [0.5330477,0.4669523] vs [0.6831,0.3169], chisq 302.0761
## Mismatched frequencies for 'X:96072046' f[G,A] = [0.02815178,0.9718482] vs [0.2954,0.7046], chisq 1073.508
## Mismatched frequencies for 'X:96159194' f[A,C] = [0.4730722,0.5269278] vs [0.6391,0.3609], chisq 348.8072
## Mismatched frequencies for 'X:96283685' f[G,T] = [0.03916769,0.9608323] vs [0.3081,0.6919], chisq 1057.167
## Mismatched frequencies for 'X:96347438' f[G,A] = [0.02264382,0.9773562] vs [0.2922,0.7078], chisq 1100.903
## Mismatched frequencies for 'X:96397369' f[G,A] = [0.4455324,0.5544676] vs [0.6061,0.3939], chisq 316.793
## Mismatched frequencies for 'X:96410191' f[A,G] = [0.3849449,0.6150551] vs [0.5539,0.4461], chisq 341.0456
## Mismatched frequencies for 'X:96436380' f[G,A] = [0.372705,0.627295] vs [0.5664,0.4336], chisq 449.8507
## Mismatched frequencies for 'X:96520542' f[G,A] = [0.3935129,0.6064871] vs [0.5952,0.4048], chisq 494.7752
## Mismatched frequencies for 'X:96847022' f[T,C] = [0.4302325,0.5697674] vs [0.6162,0.3838], chisq 427.5692
## Mismatched frequencies for 'X:96873053' f[T,C] = [0.07099143,0.9290085] vs [0.3294,0.6706], chisq 934.0055
## Mismatched frequencies for 'X:97024109' f[G,A] = [0.4681763,0.5318238] vs [0.6283,0.3717], chisq 321.1051
## Mismatched frequencies for 'X:97027471' f[A,G] = [0.4859241,0.5140759] vs [0.6403,0.3597], chisq 302.2964
## Mismatched frequencies for 'X:97098163' f[G,C] = [0.249082,0.750918] vs [0.4712,0.5288], chisq 591.6594
## Mismatched frequencies for 'X:97100358' f[G,A] = [0.1952264,0.8047736] vs [0.4247,0.5753], chisq 649.4868
## Mismatched frequencies for 'X:97102624' f[G,A] = [0.2962056,0.7037944] vs [0.4989,0.5011], chisq 488.706
## Mismatched frequencies for 'X:97107574' f[A,G] = [0.1162791,0.8837209] vs [0.3661,0.6339], chisq 822.0113
## Mismatched frequencies for 'X:97396467' f[A,G] = [0.2986536,0.7013464] vs [0.5043,0.4957], chisq 502.6919
## Mismatched frequencies for 'X:97401268' f[T,C] = [0.2986536,0.7013464] vs [0.5044,0.4956], chisq 503.1757
## Mismatched frequencies for 'X:97476194' f[G,A] = [0.2221542,0.7778458] vs [0.4532,0.5468], chisq 645.9228
## Mismatched frequencies for 'X:97542407' f[G,A] = [0.2405141,0.7594859] vs [0.4669,0.5331], chisq 615.8156
## Mismatched frequencies for 'X:97701619' f[C,G] = [0.2019584,0.7980416] vs [0.4223,0.5777], chisq 599.5789
## Mismatched frequencies for 'X:97708809' f[C,T] = [0.2607099,0.7392901] vs [0.4815,0.5185], chisq 582.4539
## Mismatched frequencies for 'X:97864354' f[T,C] = [0.246634,0.753366] vs [0.45,0.55], chisq 500.6137
## Mismatched frequencies for 'X:98264288' f[T,C] = [0.7288862,0.2711138] vs [0.9976,0.0024], chisq 8169.105
## Mismatched frequencies for 'X:98359829' f[A,G] = [0.2705018,0.7294981] vs [0.4606,0.5394], chisq 434.7981
## Mismatched frequencies for 'X:98407829' f[C,T] = [0.3372093,0.6627907] vs [0.5198,0.4802], chisq 395.9753
## Mismatched frequencies for 'X:98536813' f[A,G] = [0.0006119951,0.999388] vs [0.29,0.71], chisq 1281.157
## Mismatched frequencies for 'X:98537264' f[C,A] = [0.00122399,0.998776] vs [0.2931,0.7069], chisq 1294.277
## Mismatched frequencies for 'X:98549339' f[G,A] = [0.0006119951,0.999388] vs [0.2904,0.7096], chisq 1283.565
## Mismatched frequencies for 'X:98813260' f[A,G] = [0.05875153,0.9412485] vs [0.3407,0.6593], chisq 1094.041
## Mismatched frequencies for 'X:98835982' f[C,T] = [0.04651163,0.9534883] vs [0.3352,0.6648], chisq 1159.339
## Mismatched frequencies for 'X:99054391' f[G,A] = [0.09608323,0.9039168] vs [0.3806,0.6194], chisq 1050.247
## Mismatched frequencies for 'X:99074987' f[G,A] = [0.118115,0.8818849] vs [0.3848,0.6152], chisq 916.0746
## Mismatched frequencies for 'X:99092511' f[T,G] = [0.07772338,0.9222766] vs [0.3625,0.6375], chisq 1078.556
## Mismatched frequencies for 'X:99227329' f[A,C] = [0.1168911,0.8831089] vs [0.3698,0.6302], chisq 838.5165
## Mismatched frequencies for 'X:99298279' f[T,C] = [0.2607099,0.7392901] vs [0.4936,0.5064], chisq 646.1461
## Mismatched frequencies for 'X:99389483' f[G,C] = [0,1] vs [0.282,0.718], chisq 1239.032
## Mismatched frequencies for 'X:99483759' f[A,G] = [0.2900857,0.7099143] vs [0.4684,0.5316], chisq 381.1287
## Mismatched frequencies for 'X:99552280' f[G,A] = [0.06364749,0.9363525] vs [0.335,0.665], chisq 1021.756
## Mismatched frequencies for 'X:99672001' f[G,T] = [0.495716,0.504284] vs [0.6527,0.3473], chisq 316.9529
## Mismatched frequencies for 'X:99700786' f[C,T] = [0.4320686,0.5679315] vs [0.6015,0.3985], chisq 351.339
## Mismatched frequencies for 'X:99722163' f[C,T] = [0.4051408,0.5948592] vs [0.5663,0.4337], chisq 311.7799
## Mismatched frequencies for 'X:99743538' f[C,T] = [0.499388,0.500612] vs [0.6526,0.3474], chisq 301.9932
## Mismatched frequencies for 'X:99828252' f[C,T] = [0.3102815,0.6897185] vs [0.4945,0.5055], chisq 403.858
## Mismatched frequencies for 'X:99847554' f[A,G] = [0.1554467,0.8445532] vs [0.3913,0.6087], chisq 708.7698
## Mismatched frequencies for 'X:99906875' f[T,G] = [0.3965728,0.6034272] vs [0.5628,0.4372], chisq 331.1708
## Mismatched frequencies for 'X:99920975' f[G,A] = [0.01529988,0.9847001] vs [0.297,0.703], chisq 1191.981
## Mismatched frequencies for 'X:99993277' f[T,C] = [0.4620563,0.5379437] vs [0.6409,0.3591], chisq 405.0048
## Mismatched frequencies for 'X:100003215' f[T,C] = [0.4290086,0.5709915] vs [0.6101,0.3899], chisq 403.6103
## Mismatched frequencies for 'X:100084686' f[A,G] = [0.4167687,0.5832313] vs [0.5996,0.4004], chisq 408.2211
## Mismatched frequencies for 'X:100105008' f[T,C] = [0.007343941,0.9926561] vs [0.2845,0.7155], chisq 1187.941
## Mismatched frequencies for 'X:100109374' f[A,G] = [0.3843329,0.615667] vs [0.5671,0.4329], chisq 400.7956
## Mismatched frequencies for 'X:100131584' f[C,G] = [0.4082007,0.5917993] vs [0.5708,0.4292], chisq 317.9802
## Mismatched frequencies for 'X:100146046' f[T,C] = [0.01407589,0.9859241] vs [0.2892,0.7108], chisq 1156.553
## Mismatched frequencies for 'X:100162976' f[A,G] = [0.4253366,0.5746634] vs [0.595,0.405], chisq 350.7413
## Mismatched frequencies for 'X:100240089' f[A,G] = [0.1334149,0.8665851] vs [0.3864,0.6136], chisq 821.5631
## Mismatched frequencies for 'X:100243459' f[G,T] = [0.0875153,0.9124847] vs [0.3436,0.6564], chisq 894.5635
## Mismatched frequencies for 'X:100333528' f[G,A] = [0.4039168,0.5960832] vs [0.581,0.419], chisq 378.7973
## Mismatched frequencies for 'X:100455040' f[T,C] = [0.4051408,0.5948592] vs [0.5687,0.4313], chisq 321.4334
## Mismatched frequencies for 'X:100504066' f[T,C] = [0.4492044,0.5507956] vs [0.6081,0.3919], chisq 310.7421
## Mismatched frequencies for 'X:100547933' f[A,G] = [0.01529988,0.9847001] vs [0.2882,0.7118], chisq 1140.14
## Mismatched frequencies for 'X:100652086' f[T,C] = [0.2294982,0.7705019] vs [0.4514,0.5486], chisq 596.1283
## Mismatched frequencies for 'X:100686282' f[G,C] = [0.3365973,0.6634027] vs [0.5348,0.4652], chisq 467.0856
## Mismatched frequencies for 'X:100701655' f[T,C] = [0.2203182,0.7796817] vs [0.4422,0.5578], chisq 599.3244
## Mismatched frequencies for 'X:100742272' f[T,C] = [0.2631579,0.7368421] vs [0.4832,0.5168], chisq 578.2029
## Mismatched frequencies for 'X:100743826' f[A,G] = [0.2698898,0.7301102] vs [0.4873,0.5127], chisq 563.7695
## Mismatched frequencies for 'X:100749585' f[C,T] = [0.3066095,0.6933904] vs [0.523,0.477], chisq 556.1452
## Mismatched frequencies for 'X:100813158' f[T,C] = [0.372705,0.627295] vs [0.5505,0.4495], chisq 377.2027
## Mismatched frequencies for 'X:100911066' f[C,T] = [0.07649939,0.9235006] vs [0.3362,0.6638], chisq 932.1668
## Mismatched frequencies for 'X:101324294' f[T,G] = [0.3641371,0.6358629] vs [0.5502,0.4498], chisq 412.9819
## Mismatched frequencies for 'X:101806677' f[T,G] = [0.2943696,0.7056304] vs [0.5021,0.4979], chisq 513.086
## Mismatched frequencies for 'X:101815364' f[T,C] = [0.3922889,0.6077111] vs [0.5708,0.4292], chisq 383.0108
## Mismatched frequencies for 'X:102241591' f[G,A] = [0.03243574,0.9675643] vs [0.2958,0.7042], chisq 1040.712
## Mismatched frequencies for 'X:102430992' f[T,C] = [0.3659731,0.6340269] vs [0.5331,0.4669], chisq 332.1535
## Mismatched frequencies for 'X:102458192' f[G,A] = [0.1064872,0.8935129] vs [0.3642,0.6358], chisq 877.9944
## Mismatched frequencies for 'X:102494592' f[A,G] = [0.3629131,0.6370869] vs [0.5631,0.4369], chisq 479.8054
## Mismatched frequencies for 'X:102666281' f[G,A] = [0.07099143,0.9290085] vs [0.3231,0.6769], chisq 898.5693
## Mismatched frequencies for 'X:102720961' f[G,T] = [0.2753978,0.7246022] vs [0.471,0.529], chisq 458.4347
## Mismatched frequencies for 'X:102742742' f[G,A] = [0.04436964,0.9556304] vs [0.3113,0.6887], chisq 1034.087
## Mismatched frequencies for 'X:102946721' f[C,T] = [0.3439412,0.6560587] vs [0.5211,0.4789], chisq 372.7873
## Mismatched frequencies for 'X:102979486' f[T,C] = [0.04712362,0.9528764] vs [0.3098,0.6902], chisq 1003.719
## Mismatched frequencies for 'X:103036412' f[A,G] = [0.3157895,0.6842105] vs [0.5142,0.4858], chisq 467.5741
## Mismatched frequencies for 'X:103120236' f[G,A] = [0.3090575,0.6909425] vs [0.515,0.485], chisq 503.7457
## Mismatched frequencies for 'X:103267865' f[C,T] = [0.3353733,0.6646267] vs [0.5228,0.4772], chisq 417.2656
## Mismatched frequencies for 'X:103712415' f[G,A] = [0.4216646,0.5783353] vs [0.5838,0.4162], chisq 318.2684
## Mismatched frequencies for 'X:104375253' f[A,G] = [0.3396573,0.6603427] vs [0.5178,0.4822], chisq 376.9069
## Mismatched frequencies for 'X:104465974' f[C,T] = [0.374541,0.625459] vs [0.5488,0.4512], chisq 362.2137
## Mismatched frequencies for 'X:104566045' f[C,T] = [0.06976744,0.9302326] vs [0.3355,0.6645], chisq 978.1163
## Mismatched frequencies for 'X:104637978' f[C,T] = [0.02264382,0.9773562] vs [0.3146,0.6854], chisq 1234.481
## Mismatched frequencies for 'X:104816403' f[G,A] = [0.378213,0.621787] vs [0.5627,0.4373], chisq 407.6524
## Mismatched frequencies for 'X:105300358' f[G,A] = [0.122399,0.877601] vs [0.3732,0.6268], chisq 820.652
## Mismatched frequencies for 'X:105319355' f[G,A] = [0.124235,0.875765] vs [0.375,0.625], chisq 818.486
## Mismatched frequencies for 'X:105360289' f[A,G] = [0.3176255,0.6823745] vs [0.4947,0.5053], chisq 373.0865
## Mismatched frequencies for 'X:105670409' f[A,G] = [0.01346389,0.9865361] vs [0.2859,0.7141], chisq 1142.594
## Mismatched frequencies for 'X:106468708' f[T,G] = [0.2876377,0.7123623] vs [0.4667,0.5333], chisq 384.6009
## Mismatched frequencies for 'X:106554804' f[C,T] = [0.04834761,0.9516524] vs [0.308,0.692], chisq 983.9
## Mismatched frequencies for 'X:106709803' f[A,G] = [0.04406365,0.9559364] vs [0.3057,0.6943], chisq 1004.309
## Mismatched frequencies for 'X:106753580' f[T,C] = [0.2166463,0.7833537] vs [0.4251,0.5749], chisq 534.9684
## Mismatched frequencies for 'X:106927959' f[A,G] = [0.3543452,0.6456549] vs [0.5371,0.4629], chisq 397.3328
## Mismatched frequencies for 'X:106954772' f[C,T] = [0.129743,0.870257] vs [0.4026,0.5974], chisq 940.5473
## Mismatched frequencies for 'X:107050397' f[C,G] = [0.3427173,0.6572828] vs [0.5322,0.4678], chisq 426.7935
## Mismatched frequencies for 'X:107092263' f[A,G] = [0.04161567,0.9583843] vs [0.3043,0.6957], chisq 1015.658
## Mismatched frequencies for 'X:107328436' f[G,A] = [0.3194614,0.6805385] vs [0.5123,0.4877], chisq 441.704
## Mismatched frequencies for 'X:107393147' f[G,T] = [0.1842105,0.8157895] vs [0.4109,0.5891], chisq 641.2595
## Mismatched frequencies for 'X:107433688' f[A,G] = [0.2258262,0.7741738] vs [0.4473,0.5527], chisq 595.2289
## Mismatched frequencies for 'X:107476909' f[C,A] = [0.2294982,0.7705019] vs [0.445,0.555], chisq 564.1584
## Mismatched frequencies for 'X:107481989' f[C,T] = [0.2301102,0.7698898] vs [0.452,0.548], chisq 595.8638
## Mismatched frequencies for 'X:107738231' f[G,A] = [0.2246022,0.7753978] vs [0.4411,0.5589], chisq 570.815
## Mismatched frequencies for 'X:107770928' f[C,T] = [0.3304774,0.6695226] vs [0.5142,0.4858], chisq 400.8955
## Mismatched frequencies for 'X:108072003' f[G,A] = [0.2172583,0.7827417] vs [0.4494,0.5506], chisq 653.5169
## Mismatched frequencies for 'X:108115365' f[C,T] = [0.1529988,0.8470012] vs [0.4035,0.5965], chisq 790.3452
## Mismatched frequencies for 'X:108207148' f[T,C] = [0.124235,0.875765] vs [0.3698,0.6302], chisq 789.8095
## Mismatched frequencies for 'X:108303770' f[T,C] = [0.2044064,0.7955936] vs [0.4414,0.5586], chisq 684.7117
## Mismatched frequencies for 'X:108434258' f[C,A] = [0.05446756,0.9455324] vs [0.3172,0.6828], chisq 989.0603
## Mismatched frequencies for 'X:108507511' f[A,G] = [0.02203182,0.9779682] vs [0.2913,0.7087], chisq 1100.837
## Mismatched frequencies for 'X:108627203' f[T,C] = [0.2044064,0.7955936] vs [0.4389,0.5611], chisq 671.3615
## Mismatched frequencies for 'X:108684908' f[C,T] = [0.2172583,0.7827417] vs [0.4507,0.5493], chisq 660.4028
## Mismatched frequencies for 'X:108708516' f[C,T] = [0.1364749,0.8635251] vs [0.3942,0.6058], chisq 845.4728
## Mismatched frequencies for 'X:108708552' f[A,G] = [0.5789474,0.4210526] vs [0.7418,0.2582], chisq 396.6756
## Mismatched frequencies for 'X:108784303' f[G,T] = [0.5813953,0.4186046] vs [0.7354,0.2646], chisq 350.3203
## Mismatched frequencies for 'X:108904729' f[C,T] = [0.0009179927,0.999082] vs [0.2869,0.7131], chisq 1259.787
## Mismatched frequencies for 'X:108964592' f[G,C] = [0.3274174,0.6725826] vs [0.5045,0.4955], chisq 372.635
## Mismatched frequencies for 'X:109106747' f[A,C] = [0.3023256,0.6976744] vs [0.4987,0.5013], chisq 458.6788
## Mismatched frequencies for 'X:109173476' f[T,C] = [0.09332925,0.9066707] vs [0.3405,0.6595], chisq 836.5486
## Mismatched frequencies for 'X:109285322' f[T,C] = [0.2570379,0.7429621] vs [0.4735,0.5265], chisq 561.3022
## Mismatched frequencies for 'X:109291468' f[T,C] = [0.3922889,0.6077111] vs [0.5705,0.4295], chisq 381.6787
## Mismatched frequencies for 'X:109375110' f[A,G] = [0.1670747,0.8329253] vs [0.4203,0.5797], chisq 795.219
## Mismatched frequencies for 'X:109485665' f[G,A] = [0.2836597,0.7163402] vs [0.4708,0.5292], chisq 419.5373
## Mismatched frequencies for 'X:109537062' f[C,T] = [0.4277846,0.5722154] vs [0.5883,0.4117], chisq 312.7858
## Mismatched frequencies for 'X:110332269' f[C,T] = [0.03365973,0.9663402] vs [0.3061,0.6939], chisq 1090.349
## Mismatched frequencies for 'X:110489520' f[A,G] = [0.05140759,0.9485924] vs [0.3129,0.6871], chisq 988.0873
## Mismatched frequencies for 'X:110684831' f[G,T] = [0.5348837,0.4651163] vs [0.6849,0.3151], chisq 302.7714
## Mismatched frequencies for 'X:111150510' f[T,C] = [0.1560588,0.8439413] vs [0.3978,0.6022], chisq 739.782
## Mismatched frequencies for 'X:111152951' f[A,G] = [0.1823745,0.8176255] vs [0.4216,0.5784], chisq 708.1699
## Mismatched frequencies for 'X:111156671' f[G,A] = [0.06976744,0.9302326] vs [0.3333,0.6667], chisq 965.4049
## Mismatched frequencies for 'X:111281680' f[G,A] = [0.09547123,0.9045287] vs [0.3561,0.6439], chisq 909.0518
## Mismatched frequencies for 'X:111400754' f[T,C] = [0.2227662,0.7772338] vs [0.4293,0.5707], chisq 523.4161
## Mismatched frequencies for 'X:111404128' f[G,A] = [0.249694,0.750306] vs [0.4609,0.5391], chisq 537.1244
## Mismatched frequencies for 'X:111511839' f[G,A] = [0.1933905,0.8066096] vs [0.4325,0.5675], chisq 701.4353
## Mismatched frequencies for 'X:111514180' f[G,A] = [0.2099143,0.7900857] vs [0.4385,0.5615], chisq 637.8976
## Mismatched frequencies for 'X:111524772' f[T,C] = [0.08935128,0.9106487] vs [0.3432,0.6568], chisq 879.2946
## Mismatched frequencies for 'X:111533248' f[A,G] = [0.03916769,0.9608323] vs [0.3084,0.6916], chisq 1058.912
## Mismatched frequencies for 'X:111646464' f[C,T] = [0.250918,0.749082] vs [0.4714,0.5286], chisq 582.8955
## Mismatched frequencies for 'X:111648632' f[A,G] = [0.06915545,0.9308445] vs [0.3364,0.6636], chisq 987.9556
## Mismatched frequencies for 'X:111664389' f[A,G] = [0.04100367,0.9589964] vs [0.3127,0.6873], chisq 1069.201
## Mismatched frequencies for 'X:112079982' f[T,C] = [0.4100367,0.5899633] vs [0.584,0.416], chisq 366.2177
## Mismatched frequencies for 'X:112080302' f[G,A] = [0.1591187,0.8408813] vs [0.392,0.608], chisq 690.2728
## Mismatched frequencies for 'X:112184753' f[C,G] = [0.124235,0.875765] vs [0.3611,0.6389], chisq 742.9515
## Mismatched frequencies for 'X:112358776' f[A,C] = [0.3543452,0.6456549] vs [0.5348,0.4652], chisq 387.2694
## Mismatched frequencies for 'X:112397966' f[C,T] = [0.03427173,0.9657283] vs [0.2951,0.7049], chisq 1021.871
## Mismatched frequencies for 'X:112413133' f[C,T] = [0.3555692,0.6444308] vs [0.5334,0.4666], chisq 376.0268
## Mismatched frequencies for 'X:112485470' f[C,T] = [0.3678091,0.6321909] vs [0.5399,0.4601], chisq 352.554
## Mismatched frequencies for 'X:112626107' f[T,A] = [0,1] vs [0.2934,0.7066], chisq 1307.326
## Mismatched frequencies for 'X:112661931' f[T,C] = [0.4161567,0.5838433] vs [0.5949,0.4051], chisq 389.0526
## Mismatched frequencies for 'X:112715610' f[T,C] = [0.4241126,0.5758874] vs [0.6081,0.3919], chisq 415.9007
## Mismatched frequencies for 'X:112798604' f[C,T] = [0.0746634,0.9253366] vs [0.3357,0.6643], chisq 942.8079
## Mismatched frequencies for 'X:112808948' f[A,G] = [0.4345165,0.5654834] vs [0.6178,0.3822], chisq 415.9565
## Mismatched frequencies for 'X:112889289' f[T,C] = [0.4302325,0.5697674] vs [0.6059,0.3941], chisq 378.7284
## Mismatched frequencies for 'X:112893370' f[A,G] = [0.377601,0.622399] vs [0.5697,0.4303], chisq 443.0898
## Mismatched frequencies for 'X:112930347' f[T,G] = [0.4608323,0.5391677] vs [0.6223,0.3777], chisq 324.6632
## Mismatched frequencies for 'X:112988494' f[C,T] = [0.08445533,0.9155447] vs [0.335,0.665], chisq 868.1472
## Mismatched frequencies for 'X:113019754' f[T,C] = [0.04895961,0.9510404] vs [0.3131,0.6869], chisq 1008.287
## Mismatched frequencies for 'X:113310348' f[G,A] = [0.1529988,0.8470012] vs [0.3803,0.6197], chisq 666.2109
## Mismatched frequencies for 'X:113311824' f[G,T] = [0.1022032,0.8977968] vs [0.3413,0.6587], chisq 780.7801
## Mismatched frequencies for 'X:113315715' f[G,A] = [0.24541,0.75459] vs [0.4593,0.5407], chisq 551.352
## Mismatched frequencies for 'X:113601156' f[A,G] = [0.4816402,0.5183598] vs [0.6361,0.3639], chisq 301.2813
## Mismatched frequencies for 'X:113687692' f[T,C] = [0.3837209,0.6162791] vs [0.5458,0.4542], chisq 313.1975
## Mismatched frequencies for 'X:113747685' f[T,C] = [0.4002448,0.5997552] vs [0.5687,0.4313], chisq 340.8988
## Mismatched frequencies for 'X:113767219' f[T,C] = [0.06915545,0.9308445] vs [0.3364,0.6636], chisq 987.9556
## Mismatched frequencies for 'X:113768869' f[A,G] = [0.4137087,0.5862913] vs [0.5898,0.4102], chisq 376.4516
## Mismatched frequencies for 'X:113897581' f[A,G] = [0.03365973,0.9663402] vs [0.3001,0.6999], chisq 1055.465
## Mismatched frequencies for 'X:114036809' f[T,C] = [0.1670747,0.8329253] vs [0.3885,0.6115], chisq 625.7481
## Mismatched frequencies for 'X:114056106' f[T,C] = [0.1670747,0.8329253] vs [0.3899,0.6101], chisq 632.779
## Mismatched frequencies for 'X:114086293' f[G,A] = [0.1676867,0.8323134] vs [0.3905,0.6095], chisq 632.2861
## Mismatched frequencies for 'X:114138144' f[C,G] = [0.1701346,0.8298653] vs [0.3917,0.6083], chisq 624.3137
## Mismatched frequencies for 'X:114140485' f[G,T] = [0.1701346,0.8298653] vs [0.3889,0.6111], chisq 610.3607
## Mismatched frequencies for 'X:114219365' f[C,T] = [0.1738066,0.8261934] vs [0.3829,0.6171], chisq 560.8783
## Mismatched frequencies for 'X:114425400' f[G,A] = [0.2741738,0.7258262] vs [0.4733,0.5267], chisq 474.7539
## Mismatched frequencies for 'X:114425759' f[C,T] = [0.007343941,0.9926561] vs [0.9995,5e-04], chisq 35254.9
## Mismatched frequencies for 'X:114426171' f[C,T] = [0.0006119951,0.999388] vs [0.2841,0.7159], chisq 1245.907
## Mismatched frequencies for 'X:114426917' f[C,T] = [0.2747858,0.7252142] vs [0.4731,0.5269], chisq 470.9115
## Mismatched frequencies for 'X:114749162' f[T,C] = [0.246022,0.753978] vs [0.4697,0.5303], chisq 600.397
## Mismatched frequencies for 'X:114760676' f[G,T] = [0.998776,0.00122399] vs [0.909,0.091], chisq 315.1412
## Mismatched frequencies for 'X:114766346' f[C,T] = [0.4785802,0.5214198] vs [0.6924,0.3076], chisq 616.6848
## Mismatched frequencies for 'X:114788577' f[C,T] = [0.5483476,0.4516524] vs [0.6969,0.3031], chisq 302.7929
## Mismatched frequencies for 'X:114806391' f[C,T] = [0.2013464,0.7986536] vs [0.4323,0.5677], chisq 654.137
## Mismatched frequencies for 'X:114956872' f[C,T] = [0.1015912,0.8984088] vs [0.3634,0.6366], chisq 907.6434
## Mismatched frequencies for 'X:115020940' f[C,T] = [0.3139535,0.6860465] vs [0.5139,0.4861], chisq 474.8487
## Mismatched frequencies for 'X:115302192' f[G,A] = [0.4632803,0.5367197] vs [0.6201,0.3799], chisq 305.7553
## Mismatched frequencies for 'X:115402527' f[A,G] = [0.2955936,0.7044064] vs [0.4899,0.5101], chisq 449.7999
## Mismatched frequencies for 'X:115488259' f[G,A] = [0.3044676,0.6955324] vs [0.517,0.483], chisq 536.4815
## Mismatched frequencies for 'X:115565881' f[A,C] = [0.4565483,0.5434517] vs [0.6146,0.3854], chisq 309.0824
## Mismatched frequencies for 'X:115578634' f[G,A] = [0.02080783,0.9791921] vs [0.2912,0.7088], chisq 1110.584
## Mismatched frequencies for 'X:115627155' f[A,G] = [0.1346389,0.8653611] vs [0.3729,0.6271], chisq 739.8174
## Mismatched frequencies for 'X:115642226' f[A,G] = [0.3959608,0.6040392] vs [0.5567,0.4433], chisq 309.0387
## Mismatched frequencies for 'X:115654173' f[T,C] = [0.3959608,0.6040392] vs [0.5565,0.4435], chisq 308.2512
## Mismatched frequencies for 'X:115750294' f[G,T] = [0.3996328,0.6003672] vs [0.5846,0.4154], chisq 413.9196
## Mismatched frequencies for 'X:115794587' f[A,G] = [0.3182374,0.6817625] vs [0.5148,0.4852], chisq 458.8948
## Mismatched frequencies for 'X:116057537' f[A,C] = [0.1554467,0.8445532] vs [0.3825,0.6175], chisq 662.9742
## Mismatched frequencies for 'X:116178545' f[T,C] = [0.01101591,0.9889841] vs [0.2993,0.7007], chisq 1243.482
## Mismatched frequencies for 'X:116221689' f[C,T] = [0.5165238,0.4834761] vs [0.6694,0.3306], chisq 307.2586
## Mismatched frequencies for 'X:116310686' f[T,C] = [0.126683,0.873317] vs [0.397,0.603], chisq 928.4202
## Mismatched frequencies for 'X:116381658' f[G,A] = [0.4730722,0.5269278] vs [0.6293,0.3707], chisq 306.07
## Mismatched frequencies for 'X:116423255' f[T,G] = [0.01407589,0.9859241] vs [0.2999,0.7001], chisq 1220.052
## Mismatched frequencies for 'X:116449090' f[G,A] = [0.5862913,0.4137087] vs [0.7342,0.2658], chisq 322.6799
## Mismatched frequencies for 'X:116454068' f[T,C] = [0.5869033,0.4130967] vs [0.7349,0.2651], chisq 323.5557
## Mismatched frequencies for 'X:116675118' f[T,C] = [0.0250918,0.9749082] vs [0.2937,0.7063], chisq 1089.087
## Mismatched frequencies for 'X:117180867' f[A,G] = [0.08017136,0.9198287] vs [0.3486,0.6514], chisq 976.7026
## Mismatched frequencies for 'X:117317492' f[T,C] = [0.2239902,0.7760098] vs [0.4579,0.5421], chisq 660.4658
## Mismatched frequencies for 'X:117319820' f[C,T] = [0.2160343,0.7839657] vs [0.4484,0.5516], chisq 655.1738
## Mismatched frequencies for 'X:117332576' f[C,A] = [0.246022,0.753978] vs [0.4455,0.5545], chisq 482.8081
## Mismatched frequencies for 'X:117337058' f[T,C] = [0.02815178,0.9718482] vs [0.3118,0.6882], chisq 1170.187
## Mismatched frequencies for 'X:117345882' f[T,C] = [0.2050184,0.7949817] vs [0.4157,0.5843], chisq 550.7971
## Mismatched frequencies for 'X:117349685' f[T,C] = [0.1976744,0.8023256] vs [0.3981,0.6019], chisq 506.3677
## Mismatched frequencies for 'X:117351703' f[T,C] = [0.2135863,0.7864137] vs [0.4296,0.5704], chisq 572.8097
## Mismatched frequencies for 'X:117405664' f[A,G] = [0.2815177,0.7184823] vs [0.4884,0.5116], chisq 510.2246
## Mismatched frequencies for 'X:117423478' f[T,C] = [0.128519,0.871481] vs [0.3709,0.6291], chisq 768.0287
## Mismatched frequencies for 'X:117624940' f[G,A] = [0.370257,0.629743] vs [0.5446,0.4554], chisq 362.1863
## Mismatched frequencies for 'X:117637568' f[G,A] = [0.3537332,0.6462668] vs [0.5279,0.4721], chisq 360.4741
## Mismatched frequencies for 'X:117662452' f[C,T] = [0.3886169,0.6113831] vs [0.5519,0.4481], chisq 318.3885
## Mismatched frequencies for 'X:117677349' f[G,T] = [0.372093,0.627907] vs [0.5515,0.4485], chisq 384.1647
## Mismatched frequencies for 'X:117688749' f[C,T] = [0.253978,0.746022] vs [0.4589,0.5411], chisq 505.9837
## Mismatched frequencies for 'X:117791956' f[C,T] = [0.1982864,0.8017136] vs [0.4149,0.5851], chisq 582.932
## Mismatched frequencies for 'X:117792437' f[G,A] = [0.1040392,0.8959608] vs [0.3532,0.6468], chisq 833.1585
## Mismatched frequencies for 'X:117832367' f[C,T] = [0.1591187,0.8408813] vs [0.3962,0.6038], chisq 712.4263
## Mismatched frequencies for 'X:117886036' f[C,T] = [0.09547123,0.9045287] vs [0.3479,0.6521], chisq 862.6833
## Mismatched frequencies for 'X:118114595' f[A,G] = [0.1744186,0.8255814] vs [0.409,0.591], chisq 688.3719
## Mismatched frequencies for 'X:118165092' f[T,G] = [0.1725826,0.8274174] vs [0.4125,0.5875], chisq 718.0231
## Mismatched frequencies for 'X:118174037' f[A,G] = [0.1744186,0.8255814] vs [0.4208,0.5792], chisq 752.0912
## Mismatched frequencies for 'X:118276003' f[C,A] = [0.3886169,0.6113831] vs [0.5602,0.4398], chisq 352.4507
## Mismatched frequencies for 'X:118291392' f[T,C] = [0.03182375,0.9681762] vs [0.3192,0.6808], chisq 1183.905
## Mismatched frequencies for 'X:118325423' f[G,A] = [0.02815178,0.9718482] vs [0.3107,0.6893], chisq 1163.574
## Mismatched frequencies for 'X:118485219' f[G,A] = [0.09791922,0.9020808] vs [0.3408,0.6592], chisq 806.8254
## Mismatched frequencies for 'X:118504453' f[T,C] = [0.02325581,0.9767442] vs [0.2929,0.7071], chisq 1099.819
## Mismatched frequencies for 'X:118534119' f[G,A] = [0.2845777,0.7154223] vs [0.4772,0.5228], chisq 443.5613
## Mismatched frequencies for 'X:118544448' f[T,C] = [0.0624235,0.9375765] vs [0.3226,0.6774], chisq 959.2693
## Mismatched frequencies for 'X:118567702' f[T,C] = [0.2325581,0.7674419] vs [0.4512,0.5488], chisq 578.7097
## Mismatched frequencies for 'X:118608328' f[C,T] = [0.3635251,0.6364749] vs [0.5476,0.4524], chisq 403.9531
## Mismatched frequencies for 'X:118693279' f[G,A] = [0.2906977,0.7093023] vs [0.5052,0.4948], chisq 546.9143
## Mismatched frequencies for 'X:118703075' f[C,T] = [0.2631579,0.7368421] vs [0.4787,0.5213], chisq 555.5072
## Mismatched frequencies for 'X:118722024' f[G,T] = [0.3151775,0.6848225] vs [0.5016,0.4984], chisq 413.1479
## Mismatched frequencies for 'X:118744432' f[G,T] = [0.2129743,0.7870257] vs [0.4374,0.5626], chisq 615.1923
## Mismatched frequencies for 'X:118749139' f[T,C] = [0.1976744,0.8023256] vs [0.4287,0.5713], chisq 656.3167
## Mismatched frequencies for 'X:118865122' f[G,A] = [0.3231334,0.6768666] vs [0.5472,0.4528], chisq 597.9837
## Mismatched frequencies for 'X:118868942' f[G,A] = [0.4663403,0.5336598] vs [0.6402,0.3598], chisq 382.647
## Mismatched frequencies for 'X:118886604' f[T,C] = [0.2399021,0.7600979] vs [0.4609,0.5391], chisq 588.3347
## Mismatched frequencies for 'X:118888586' f[C,T] = [0.2802938,0.7197062] vs [0.4801,0.5199], chisq 476.9256
## Mismatched frequencies for 'X:118893137' f[T,C] = [0.3629131,0.6370869] vs [0.5402,0.4598], chisq 374.1521
## Mismatched frequencies for 'X:118895641' f[T,G] = [0.3861689,0.6138311] vs [0.56,0.44], chisq 361.694
## Mismatched frequencies for 'X:118907637' f[G,A] = [0.5269278,0.4730722] vs [0.6871,0.3129], chisq 345.8383
## Mismatched frequencies for 'X:119159256' f[T,C] = [0.04039168,0.9596083] vs [0.3013,0.6987], chisq 1008.243
## Mismatched frequencies for 'X:119356133' f[C,A] = [0.1860465,0.8139535] vs [0.4102,0.5898], chisq 627.2638
## Mismatched frequencies for 'X:119389966' f[C,T] = [0.2974296,0.7025704] vs [0.504,0.496], chisq 507.2424
## Mismatched frequencies for 'X:119395677' f[C,T] = [0.3543452,0.6456549] vs [0.5463,0.4537], chisq 439.0663
## Mismatched frequencies for 'X:119467974' f[G,A] = [0.5281518,0.4718482] vs [0.6787,0.3213], chisq 302.048
## Mismatched frequencies for 'X:119503451' f[G,A] = [0.4926561,0.5073439] vs [0.6469,0.3531], chisq 304.0037
## Mismatched frequencies for 'X:119511311' f[G,A] = [0.4596083,0.5403917] vs [0.6269,0.3731], chisq 349.8138
## Mismatched frequencies for 'X:119536591' f[T,C] = [0.4106487,0.5893513] vs [0.5785,0.4215], chisq 340.0379
## Mismatched frequencies for 'X:119567018' f[A,G] = [0.4161567,0.5838433] vs [0.5826,0.4174], chisq 335.1091
## Mismatched frequencies for 'X:119588151' f[G,T] = [0.373317,0.626683] vs [0.5441,0.4559], chisq 347.532
## Mismatched frequencies for 'X:119664545' f[C,T] = [0.3598531,0.6401469] vs [0.5481,0.4519], chisq 422.4837
## Mismatched frequencies for 'X:119789370' f[T,C] = [0.4253366,0.5746634] vs [0.5928,0.4072], chisq 341.2648
## Mismatched frequencies for 'X:119814264' f[G,A] = [0.4810281,0.5189719] vs [0.6389,0.3611], chisq 315.5618
## Mismatched frequencies for 'X:119842752' f[G,T] = [0.1425949,0.8574051] vs [0.3951,0.6049], chisq 810.3397
## Mismatched frequencies for 'X:119849032' f[T,C] = [0.05385557,0.9461444] vs [0.3145,0.6855], chisq 978.3316
## Mismatched frequencies for 'X:119852817' f[A,C] = [0.07405141,0.9259486] vs [0.3263,0.6737], chisq 894.1846
## Mismatched frequencies for 'X:119877881' f[G,A] = [0.2013464,0.7986536] vs [0.4285,0.5715], chisq 634.4268
## Mismatched frequencies for 'X:119904393' f[T,C] = [0.3592411,0.6407589] vs [0.5282,0.4718], chisq 339.2647
## Mismatched frequencies for 'X:119933081' f[C,T] = [0.1615667,0.8384333] vs [0.3831,0.6169], chisq 630.2998
## Mismatched frequencies for 'X:119944165' f[G,A] = [0.1860465,0.8139535] vs [0.4195,0.5805], chisq 675.3035
## Mismatched frequencies for 'X:120171335' f[T,C] = [0.03916769,0.9608323] vs [0.3048,0.6952], chisq 1038.061
## Mismatched frequencies for 'X:120261350' f[T,C] = [0.375153,0.624847] vs [0.5437,0.4563], chisq 338.4764
## Mismatched frequencies for 'X:120371989' f[C,T] = [0.4314565,0.5685434] vs [0.6091,0.3909], chisq 388.1818
## Mismatched frequencies for 'X:120377132' f[T,C] = [0.3017136,0.6982864] vs [0.5005,0.4995], chisq 469.9056
## Mismatched frequencies for 'X:120427950' f[T,C] = [0.03182375,0.9681762] vs [0.2951,0.7049], chisq 1041.682
## Mismatched frequencies for 'X:120599945' f[G,A] = [0.2197062,0.7802938] vs [0.4378,0.5622], chisq 580.5815
## Mismatched frequencies for 'X:120971710' f[A,G] = [0.3353733,0.6646267] vs [0.5165,0.4835], chisq 389.6359
## Mismatched frequencies for 'X:121029926' f[A,G] = [0.1340269,0.8659731] vs [0.3741,0.6259], chisq 750.1026
## Mismatched frequencies for 'X:121088651' f[C,G] = [0.1664627,0.8335373] vs [0.4174,0.5826], chisq 782.7469
## Mismatched frequencies for 'X:121502982' f[C,T] = [0.06119951,0.9388005] vs [0.3314,0.6686], chisq 1019.478
## Mismatched frequencies for 'X:121503136' f[A,G] = [0.2600979,0.7399021] vs [0.4875,0.5125], chisq 616.8974
## Mismatched frequencies for 'X:121503432' f[A,G] = [0.04039168,0.9596083] vs [0.3118,0.6882], chisq 1068.872
## Mismatched frequencies for 'X:121520007' f[A,C] = [0.07282741,0.9271726] vs [0.3405,0.6595], chisq 984.1959
## Mismatched frequencies for 'X:121541208' f[T,C] = [0.06976744,0.9302326] vs [0.3288,0.6712], chisq 939.6536
## Mismatched frequencies for 'X:121546704' f[C,T] = [0.3096695,0.6903305] vs [0.5233,0.4767], chisq 542.0572
## Mismatched frequencies for 'X:121551623' f[C,T] = [0.07588739,0.9241126] vs [0.3353,0.6647], chisq 931.5249
## Mismatched frequencies for 'X:121567382' f[G,A] = [0.3271114,0.6728886] vs [0.5383,0.4617], chisq 530.4714
## Mismatched frequencies for 'X:121574077' f[T,C] = [0.07160342,0.9283966] vs [0.3403,0.6597], chisq 992.237
## Mismatched frequencies for 'X:121579673' f[G,A] = [0.2080783,0.7919217] vs [0.4547,0.5453], chisq 735.917
## Mismatched frequencies for 'X:121585278' f[C,T] = [0.1040392,0.8959608] vs [0.372,0.628], chisq 940.2497
## Mismatched frequencies for 'X:121761189' f[G,A] = [0.3206854,0.6793145] vs [0.5349,0.4651], chisq 545.5061
## Mismatched frequencies for 'X:121804192' f[A,G] = [0.06670747,0.9332925] vs [0.3403,0.6597], chisq 1029.513
## Mismatched frequencies for 'X:121837051' f[G,A] = [0.372705,0.627295] vs [0.5759,0.4241], chisq 496.8957
## Mismatched frequencies for 'X:121972773' f[C,T] = [0.4455324,0.5544676] vs [0.6226,0.3774], chisq 390.0327
## Mismatched frequencies for 'X:121980825' f[T,C] = [0.4283966,0.5716034] vs [0.6142,0.3858], chisq 426.1236
## Mismatched frequencies for 'X:122076020' f[C,A] = [0.09914321,0.9008568] vs [0.3538,0.6462], chisq 870.1892
## Mismatched frequencies for 'X:122098514' f[A,C] = [0.0875153,0.9124847] vs [0.3468,0.6532], chisq 912.7112
## Mismatched frequencies for 'X:122213876' f[C,T] = [0.2674419,0.7325581] vs [0.4774,0.5226], chisq 527.2364
## Mismatched frequencies for 'X:122326318' f[T,C] = [0.246022,0.753978] vs [0.4593,0.5407], chisq 548.1864
## Mismatched frequencies for 'X:122352835' f[A,G] = [0.0752754,0.9247246] vs [0.3349,0.6651], chisq 933.7367
## Mismatched frequencies for 'X:122354683' f[G,A] = [0.1156671,0.884333] vs [0.3707,0.6293], chisq 851.8478
## Mismatched frequencies for 'X:122358869' f[C,A] = [0.378825,0.621175] vs [0.5555,0.4445], chisq 373.0284
## Mismatched frequencies for 'X:122364962' f[A,C] = [0.372093,0.627907] vs [0.56,0.44], chisq 422.4511
## Mismatched frequencies for 'X:122386057' f[A,G] = [0.3537332,0.6462668] vs [0.5514,0.4486], chisq 466.1173
## Mismatched frequencies for 'X:122429119' f[A,G] = [0.246634,0.753366] vs [0.4503,0.5497], chisq 502.0154
## Mismatched frequencies for 'X:122441479' f[G,A] = [0.2705018,0.7294981] vs [0.4812,0.5188], chisq 530.3226
## Mismatched frequencies for 'X:122473878' f[T,C] = [0.494798,0.5052019] vs [0.656,0.344], chisq 335.3979
## Mismatched frequencies for 'X:122503729' f[A,G] = [0.1842105,0.8157895] vs [0.4089,0.5911], chisq 631.0617
## Mismatched frequencies for 'X:122515696' f[A,G] = [0.02753978,0.9724602] vs [0.315,0.685], chisq 1194.752
## Mismatched frequencies for 'X:122531872' f[C,T] = [0.05201959,0.9479804] vs [0.3223,0.6777], chisq 1037.669
## Mismatched frequencies for 'X:122536126' f[C,A] = [0.3959608,0.6040392] vs [0.5595,0.4405], chisq 320.1831
## Mismatched frequencies for 'X:122570930' f[A,C] = [0.1774786,0.8225214] vs [0.4157,0.5843], chisq 705.7636
## Mismatched frequencies for 'X:122576606' f[A,G] = [0.2233782,0.7766218] vs [0.4514,0.5486], chisq 629.6624
## Mismatched frequencies for 'X:122579104' f[A,C] = [0.1187271,0.881273] vs [0.3671,0.6329], chisq 811.2371
## Mismatched frequencies for 'X:122582923' f[T,C] = [0.4675643,0.5324357] vs [0.625,0.375], chisq 309.5205
## Mismatched frequencies for 'X:122587571' f[A,G] = [0.4669523,0.5330477] vs [0.637,0.363], chisq 364.961
## Mismatched frequencies for 'X:122595993' f[C,T] = [0.04528764,0.9547124] vs [0.3144,0.6856], chisq 1044.792
## Mismatched frequencies for 'X:122628259' f[T,C] = [0.0257038,0.9742962] vs [0.3038,0.6962], chisq 1143.108
## Mismatched frequencies for 'X:122660050' f[A,C] = [0.1321909,0.8678091] vs [0.3673,0.6327], chisq 725.4988
## Mismatched frequencies for 'X:122692171' f[T,C] = [0.3439412,0.6560587] vs [0.5248,0.4752], chisq 388.5901
## Mismatched frequencies for 'X:122876619' f[G,A] = [0.2662179,0.7337821] vs [0.4762,0.5238], chisq 527.5734
## Mismatched frequencies for 'X:122928082' f[T,G] = [0.3947369,0.6052632] vs [0.5842,0.4158], chisq 434.0933
## Mismatched frequencies for 'X:122928528' f[C,T] = [0.1034272,0.8965728] vs [0.3335,0.6665], chisq 731.5961
## Mismatched frequencies for 'X:122942431' f[G,A] = [0.1811506,0.8188494] vs [0.3834,0.6166], chisq 524.0709
## Mismatched frequencies for 'X:122944839' f[G,A] = [0.2735618,0.7264382] vs [0.4619,0.5381], chisq 426.5013
## Mismatched frequencies for 'X:122958467' f[T,C] = [0.4767442,0.5232558] vs [0.6368,0.3632], chisq 323.5704
## Mismatched frequencies for 'X:122970766' f[A,G] = [0.1585067,0.8414932] vs [0.3741,0.6259], chisq 603.1918
## Mismatched frequencies for 'X:123131239' f[G,A] = [0.07160342,0.9283966] vs [0.3245,0.6755], chisq 901.9226
## Mismatched frequencies for 'X:123204486' f[G,T] = [0.4498164,0.5501836] vs [0.6301,0.3699], chisq 407.0334
## Mismatched frequencies for 'X:123250497' f[G,A] = [0.2184823,0.7815177] vs [0.4611,0.5389], chisq 709.6926
## Mismatched frequencies for 'X:123309357' f[G,A] = [0.3457772,0.6542228] vs [0.5443,0.4557], chisq 469.3576
## Mismatched frequencies for 'X:123372017' f[A,G] = [0.3053856,0.6946145] vs [0.4863,0.5137], chisq 390.1507
## Mismatched frequencies for 'X:123438153' f[G,A] = [0.04773562,0.9522644] vs [0.3038,0.6962], chisq 964.8899
## Mismatched frequencies for 'X:123457841' f[C,T] = [0.1738066,0.8261934] vs [0.3868,0.6132], chisq 579.6102
## Mismatched frequencies for 'X:123507894' f[C,T] = [0.04467564,0.9553244] vs [0.3131,0.6869], chisq 1042.098
## Mismatched frequencies for 'X:123536223' f[G,A] = [0.3665851,0.6334149] vs [0.5694,0.4306], chisq 493.6396
## Mismatched frequencies for 'X:123549333' f[T,C] = [0.01101591,0.9889841] vs [0.2894,0.7106], chisq 1184.406
## Mismatched frequencies for 'X:123555621' f[C,G] = [0.3935129,0.6064871] vs [0.5875,0.4125], chisq 455.8034
## Mismatched frequencies for 'X:123590006' f[G,T] = [0.2117503,0.7882497] vs [0.4424,0.5576], chisq 647.8768
## Mismatched frequencies for 'X:123613551' f[G,A] = [0.3237454,0.6762546] vs [0.5117,0.4883], chisq 419.6163
## Mismatched frequencies for 'X:123680082' f[T,C] = [0.08567932,0.9143207] vs [0.3369,0.6631], chisq 870.0525
## Mismatched frequencies for 'X:124186142' f[T,C] = [0.0122399,0.9877601] vs [0.292,0.708], chisq 1189.032
## Mismatched frequencies for 'X:124219165' f[C,T] = [0.03977968,0.9602203] vs [0.3019,0.6981], chisq 1016.529
## Mismatched frequencies for 'X:124261531' f[C,T] = [0.1358629,0.8641371] vs [0.3904,0.6096], chisq 827.951
## Mismatched frequencies for 'X:124268338' f[A,C] = [0.2802938,0.7197062] vs [0.4913,0.5087], chisq 530.4546
## Mismatched frequencies for 'X:124276789' f[T,C] = [0.2729498,0.7270502] vs [0.4652,0.5348], chisq 443.8336
## Mismatched frequencies for 'X:124302565' f[A,G] = [0.4589963,0.5410036] vs [0.6225,0.3775], chisq 332.9065
## Mismatched frequencies for 'X:124327660' f[G,T] = [0.3953488,0.6046512] vs [0.5752,0.4248], chisq 389.5463
## Mismatched frequencies for 'X:124394761' f[A,G] = [0.1933905,0.8066096] vs [0.4241,0.5759], chisq 656.8779
## Mismatched frequencies for 'X:124395833' f[G,A] = [0.1927784,0.8072215] vs [0.419,0.581], chisq 634.0256
## Mismatched frequencies for 'X:124483759' f[T,C] = [0.4663403,0.5336598] vs [0.6295,0.3705], chisq 333.6933
## Mismatched frequencies for 'X:124496835' f[A,G] = [0.382497,0.6175031] vs [0.5677,0.4323], chisq 411.6143
## Mismatched frequencies for 'X:124564413' f[G,A] = [0.2980416,0.7019584] vs [0.475,0.525], chisq 374.449
## Mismatched frequencies for 'X:124572254' f[A,G] = [0.2925337,0.7074664] vs [0.4618,0.5382], chisq 344.2466
## Mismatched frequencies for 'X:124604731' f[C,A] = [0.2637699,0.7362301] vs [0.4445,0.5555], chisq 396.1524
## Mismatched frequencies for 'X:124660471' f[G,T] = [0.2760098,0.7239902] vs [0.4395,0.5605], chisq 324.8486
## Mismatched frequencies for 'X:124682585' f[G,C] = [0.03243574,0.9675643] vs [0.2954,0.7046], chisq 1038.425
## Mismatched frequencies for 'X:124727521' f[T,G] = [0.3402693,0.6597307] vs [0.5212,0.4788], chisq 388.827
## Mismatched frequencies for 'X:124732971' f[C,T] = [0.3402693,0.6597307] vs [0.9546,0.0454], chisq 12279.04
## Mismatched frequencies for 'X:124813248' f[A,G] = [0.02998776,0.9700123] vs [0.2942,0.7058], chisq 1051.51
## Mismatched frequencies for 'X:125048452' f[C,T] = [0.0128519,0.9871481] vs [0.3,0.7], chisq 1231.44
## Mismatched frequencies for 'X:125060265' f[T,C] = [0.254896,0.745104] vs [0.4844,0.5156], chisq 628.9357
## Mismatched frequencies for 'X:125084224' f[T,C] = [0.3231334,0.6768666] vs [0.5175,0.4825], chisq 448.6809
## Mismatched frequencies for 'X:125487171' f[A,G] = [0.3482252,0.6517748] vs [0.5522,0.4478], chisq 496.3711
## Mismatched frequencies for 'X:125529604' f[C,T] = [0.382497,0.6175031] vs [0.5857,0.4143], chisq 499.4037
## Mismatched frequencies for 'X:125581882' f[T,C] = [0.3653611,0.6346389] vs [0.5838,0.4162], chisq 576.0882
## Mismatched frequencies for 'X:125643773' f[T,C] = [0.5948592,0.4051408] vs [0.7377,0.2623], chisq 303.6081
## Mismatched frequencies for 'X:125667479' f[A,G] = [0.03121175,0.9687883] vs [0.3102,0.6898], chisq 1134.856
## Mismatched frequencies for 'X:125792500' f[T,G] = [0.04161567,0.9583843] vs [0.3182,0.6818], chisq 1096.685
## Mismatched frequencies for 'X:125847712' f[T,C] = [0.99082,0.009179926] vs [0.2914,0.7086], chisq 6340.536
## Mismatched frequencies for 'X:125953932' f[A,G] = [0.1713586,0.8286414] vs [0.3975,0.6025], chisq 646.6156
## Mismatched frequencies for 'X:125957069' f[A,C] = [0.1927784,0.8072215] vs [0.4143,0.5857], chisq 610.2117
## Mismatched frequencies for 'X:126012422' f[T,C] = [0.01713586,0.9828641] vs [0.2887,0.7113], chisq 1127.294
## Mismatched frequencies for 'X:126069141' f[G,A] = [0.127907,0.872093] vs [0.3649,0.6351], chisq 739.7884
## Mismatched frequencies for 'X:126742422' f[A,G] = [0.09547123,0.9045287] vs [0.3473,0.6527], chisq 859.3368
## Mismatched frequencies for 'X:126778904' f[C,T] = [0.3335373,0.6664627] vs [0.5102,0.4898], chisq 370.7194
## Mismatched frequencies for 'X:126829971' f[A,G] = [0.4216646,0.5783353] vs [0.5808,0.4192], chisq 306.1395
## Mismatched frequencies for 'X:126987705' f[A,G] = [0.02080783,0.9791921] vs [0.2934,0.7066], chisq 1123.387
## Mismatched frequencies for 'X:127135841' f[A,G] = [0.09730722,0.9026928] vs [0.3419,0.6581], chisq 816.9549
## Mismatched frequencies for 'X:127386493' f[G,A] = [0.253978,0.746022] vs [0.452,0.548], chisq 474.0021
## Mismatched frequencies for 'X:127532107' f[G,A] = [0.09118727,0.9088127] vs [0.3447,0.6553], chisq 874.7621
## Mismatched frequencies for 'X:127557442' f[C,T] = [0.1842105,0.8157895] vs [0.4122,0.5878], chisq 647.9327
## Mismatched frequencies for 'X:127761739' f[C,G] = [0.4418605,0.5581396] vs [0.604,0.396], chisq 322.4855
## Mismatched frequencies for 'X:127770854' f[T,C] = [0.0495716,0.9504284] vs [0.333,0.667], chisq 1120.945
## Mismatched frequencies for 'X:127794363' f[T,C] = [0.3072215,0.6927785] vs [0.504,0.496], chisq 460.2455
## Mismatched frequencies for 'X:127796631' f[T,C] = [0.4663403,0.5336598] vs [0.6315,0.3685], chisq 342.5311
## Mismatched frequencies for 'X:127896299' f[C,T] = [0.1413709,0.8586291] vs [0.401,0.599], chisq 851.9107
## Mismatched frequencies for 'X:127933383' f[C,T] = [0.2337821,0.7662179] vs [0.4661,0.5339], chisq 648.8946
## Mismatched frequencies for 'X:127947716' f[C,T] = [0.08078335,0.9192166] vs [0.3487,0.6513], chisq 972.751
## Mismatched frequencies for 'X:128053026' f[T,C] = [0.02998776,0.9700123] vs [0.3026,0.6974], chisq 1100.168
## Mismatched frequencies for 'X:128053082' f[G,A] = [0.124541,0.875459] vs [0.374,0.626], chisq 810.9117
## Mismatched frequencies for 'X:128123968' f[G,A] = [0.3812729,0.618727] vs [0.5532,0.4468], chisq 353.0446
## Mismatched frequencies for 'X:128171413' f[T,C] = [0.3384333,0.6615667] vs [0.5368,0.4632], chisq 467.9905
## Mismatched frequencies for 'X:128177617' f[C,T] = [0.369033,0.630967] vs [0.5592,0.4408], chisq 432.5254
## Mismatched frequencies for 'X:128186756' f[T,C] = [0.1462668,0.8537332] vs [0.3838,0.6162], chisq 725.2912
## Mismatched frequencies for 'X:128198305' f[C,T] = [0.3987148,0.6012852] vs [0.5742,0.4258], chisq 370.7575
## Mismatched frequencies for 'X:128252018' f[G,A] = [0.2992656,0.7007344] vs [0.4986,0.5014], chisq 472.6377
## Mismatched frequencies for 'X:128276877' f[T,G] = [0.3512852,0.6487148] vs [0.5343,0.4657], chisq 398.2931
## Mismatched frequencies for 'X:128281852' f[A,G] = [0.131579,0.8684211] vs [0.3814,0.6186], chisq 805.7061
## Mismatched frequencies for 'X:128745520' f[C,G] = [0.1725826,0.8274174] vs [0.3913,0.6087], chisq 608.4606
## Mismatched frequencies for 'X:128871920' f[A,G] = [0.2858017,0.7141983] vs [0.4797,0.5203], chisq 449.1196
## Mismatched frequencies for 'X:128914508' f[T,C] = [0.03977968,0.9602203] vs [0.3042,0.6958], chisq 1029.707
## Mismatched frequencies for 'X:128948511' f[T,C] = [0.1505508,0.8494492] vs [0.429,0.571], chisq 956.4428
## Mismatched frequencies for 'X:129445772' f[A,G] = [0.4051408,0.5948592] vs [0.5819,0.4181], chisq 377.599
## Mismatched frequencies for 'X:129477451' f[A,G] = [0.5458996,0.4541004] vs [0.6962,0.3038], chisq 309.5107
## Mismatched frequencies for 'X:129479460' f[T,C] = [0.5458996,0.4541004] vs [0.6958,0.3042], chisq 307.6774
## Mismatched frequencies for 'X:129977520' f[C,T] = [0.02141983,0.9785802] vs [0.2893,0.7107], chisq 1094.429
## Mismatched frequencies for 'X:130028766' f[T,C] = [0.2050184,0.7949817] vs [0.4212,0.5788], chisq 577.4924
## Mismatched frequencies for 'X:130210648' f[G,A] = [0.3298654,0.6701347] vs [0.5298,0.4702], chisq 475.0077
## Mismatched frequencies for 'X:130245761' f[G,A] = [0.2239902,0.7760098] vs [0.4598,0.5402], chisq 670.6496
## Mismatched frequencies for 'X:130278783' f[T,C] = [0.1407589,0.8592411] vs [0.386,0.614], chisq 771.7555
## Mismatched frequencies for 'X:130412178' f[C,G] = [0.3984088,0.6015912] vs [0.5725,0.4275], chisq 364.6237
## Mismatched frequencies for 'X:130416958' f[C,T] = [0,1] vs [0.2853,0.7147], chisq 1258.605
## Mismatched frequencies for 'X:130420006' f[T,C] = [0.0006119951,0.999388] vs [0.2831,0.7169], chisq 1239.983
## Mismatched frequencies for 'X:130550306' f[C,T] = [0.3286414,0.6713586] vs [0.5238,0.4762], chisq 452.4089
## Mismatched frequencies for 'X:130625983' f[A,G] = [0.3922889,0.6077111] vs [0.5529,0.4471], chisq 308.1693
## Mismatched frequencies for 'X:130678844' f[A,C] = [0.3886169,0.6113831] vs [0.5521,0.4479], chisq 319.1862
## Mismatched frequencies for 'X:130761442' f[A,G] = [0.3445532,0.6554468] vs [0.5183,0.4817], chisq 358.54
## Mismatched frequencies for 'X:130779350' f[C,T] = [0.06793146,0.9320685] vs [0.3313,0.6687], chisq 967.6531
## Mismatched frequencies for 'X:130813085' f[A,G] = [0.09118727,0.9088127] vs [0.3519,0.6481], chisq 915.5352
## Mismatched frequencies for 'X:130949827' f[T,C] = [0.4424725,0.5575275] vs [0.6001,0.3999], chisq 304.0213
## Mismatched frequencies for 'X:130962841' f[A,G] = [0.2178702,0.7821298] vs [0.4305,0.5695], chisq 554.5068
## Mismatched frequencies for 'X:131122443' f[A,G] = [0.04406365,0.9559364] vs [0.3262,0.6738], chisq 1124.61
## Mismatched frequencies for 'X:131446383' f[T,C] = [0.1756426,0.8243574] vs [0.3893,0.6107], chisq 581.6247
## Mismatched frequencies for 'X:131487273' f[C,T] = [0.01529988,0.9847001] vs [0.2904,0.7096], chisq 1152.994
## Mismatched frequencies for 'X:131578034' f[A,G] = [0.4020808,0.5979192] vs [0.5794,0.4206], chisq 379.4872
## Mismatched frequencies for 'X:131850355' f[A,C] = [0.1762546,0.8237454] vs [0.383,0.617], chisq 548.1497
## Mismatched frequencies for 'X:132118996' f[T,C] = [0.1554467,0.8445532] vs [0.3612,0.6388], chisq 558.2655
## Mismatched frequencies for 'X:132931055' f[C,T] = [0.02294982,0.9770502] vs [0.2912,0.7088], chisq 1092.547
## Mismatched frequencies for 'X:132935739' f[C,T] = [0.247858,0.752142] vs [0.461,0.539], chisq 547.0365
## Mismatched frequencies for 'X:133144664' f[C,T] = [0.4051408,0.5948592] vs [0.5827,0.4173], chisq 381.1739
## Mismatched frequencies for 'X:133265189' f[G,T] = [0.5312117,0.4687882] vs [0.7169,0.2831], chisq 487.4359
## Mismatched frequencies for 'X:133456998' f[G,A] = [0.05263158,0.9473684] vs [0.3209,0.6791], chisq 1024.698
## Mismatched frequencies for 'X:133500700' f[A,G] = [0.2423501,0.75765] vs [0.4624,0.5376], chisq 582.8591
## Mismatched frequencies for 'X:133542487' f[T,C] = [0.1015912,0.8984088] vs [0.3499,0.6501], chisq 831.6169
## Mismatched frequencies for 'X:133673516' f[A,G] = [0.256426,0.743574] vs [0.4882,0.5118], chisq 640.7948
## Mismatched frequencies for 'X:133707732' f[C,T] = [0.3580172,0.6419828] vs [0.5541,0.4459], chisq 459.0416
## Mismatched frequencies for 'X:133731503' f[A,G] = [0.3059976,0.6940025] vs [0.4869,0.5131], chisq 390.0425
## Mismatched frequencies for 'X:133765719' f[G,A] = [0.4314565,0.5685434] vs [0.6018,0.3982], chisq 355.1859
## Mismatched frequencies for 'X:133827868' f[G,A] = [0.2420441,0.7579559] vs [0.4799,0.5201], chisq 676.6676
## Mismatched frequencies for 'X:133860424' f[A,G] = [0.2356181,0.7643819] vs [0.4634,0.5366], chisq 624.4533
## Mismatched frequencies for 'X:133881885' f[C,T] = [0.3671971,0.632803] vs [0.572,0.428], chisq 503.8771
## Mismatched frequencies for 'X:134078524' f[T,C] = [0.1597307,0.8402693] vs [0.4057,0.5943], chisq 760.016
## Mismatched frequencies for 'X:134080371' f[C,A] = [0.3898409,0.6101591] vs [0.5768,0.4232], chisq 421.1377
## Mismatched frequencies for 'X:134087204' f[T,C] = [0.1395349,0.8604651] vs [0.3887,0.6113], chisq 794.4757
## Mismatched frequencies for 'X:134088268' f[C,G] = [0.1799266,0.8200734] vs [0.4184,0.5816], chisq 705.6001
## Mismatched frequencies for 'X:134140870' f[C,T] = [0.2729498,0.7270502] vs [0.4745,0.5255], chisq 486.2124
## Mismatched frequencies for 'X:134204829' f[T,C] = [0.2772338,0.7227662] vs [0.4878,0.5122], chisq 528.681
## Mismatched frequencies for 'X:134477613' f[A,C] = [0.2747858,0.7252142] vs [0.4835,0.5165], chisq 520.0002
## Mismatched frequencies for 'X:134650924' f[T,C] = [0.03977968,0.9602203] vs [0.3203,0.6797], chisq 1124.224
## Mismatched frequencies for 'X:134660167' f[G,A] = [0.01591187,0.9840881] vs [0.2937,0.7063], chisq 1167.104
## Mismatched frequencies for 'X:134757482' f[A,G] = [0.07711139,0.9228886] vs [0.3438,0.6562], chisq 971.4193
## Mismatched frequencies for 'X:134823362' f[T,C] = [0.06670747,0.9332925] vs [0.3366,0.6634], chisq 1007.705
## Mismatched frequencies for 'X:134910394' f[A,G] = [0.1670747,0.8329253] vs [0.4047,0.5953], chisq 709.4931
## Mismatched frequencies for 'X:135055694' f[T,C] = [0.1554467,0.8445532] vs [0.4008,0.5992], chisq 759.9266
## Mismatched frequencies for 'X:135213329' f[T,G] = [0.2331701,0.7668299] vs [0.4731,0.5269], chisq 690.2817
## Mismatched frequencies for 'X:135221358' f[G,A] = [0.2160343,0.7839657] vs [0.4585,0.5415], chisq 709.7335
## Mismatched frequencies for 'X:135250115' f[A,G] = [0.2111383,0.7888617] vs [0.4564,0.5436], chisq 727.0993
## Mismatched frequencies for 'X:135254670' f[A,G] = [0.2111383,0.7888617] vs [0.4564,0.5436], chisq 727.0993
## Mismatched frequencies for 'X:135293082' f[G,A] = [0.4920441,0.5079559] vs [0.6512,0.3488], chisq 325.1262
## Mismatched frequencies for 'X:135310785' f[T,C] = [0.4430845,0.5569155] vs [0.6175,0.3825], chisq 376.842
## Mismatched frequencies for 'X:135313034' f[T,G] = [0.4430845,0.5569155] vs [0.6138,0.3862], chisq 360.0145
## Mismatched frequencies for 'X:135343527' f[A,G] = [0.4443085,0.5556915] vs [0.6154,0.3846], chisq 362.0689
## Mismatched frequencies for 'X:135664064' f[C,T] = [0.3806609,0.6193391] vs [0.563,0.437], chisq 398.2884
## Mismatched frequencies for 'X:135681110' f[C,T] = [0.2246022,0.7753978] vs [0.434,0.566], chisq 536.3144
## Mismatched frequencies for 'X:135727335' f[A,G] = [0.3243574,0.6756426] vs [0.5152,0.4848], chisq 432.5671
## Mismatched frequencies for 'X:135885110' f[A,G] = [0.2392901,0.7607099] vs [0.461,0.539], chisq 592.1219
## Mismatched frequencies for 'X:135929750' f[G,A] = [0.24541,0.75459] vs [0.4599,0.5401], chisq 554.3027
## Mismatched frequencies for 'X:136055295' f[T,C] = [0.03059975,0.9694002] vs [0.3124,0.6876], chisq 1153.132
## Mismatched frequencies for 'X:136113464' f[C,A] = [0.4926561,0.5073439] vs [0.6496,0.3504], chisq 315.6331
## Mismatched frequencies for 'X:136193136' f[C,T] = [0.06181151,0.9381885] vs [0.3318,0.6682], chisq 1017.104
## Mismatched frequencies for 'X:136251517' f[T,C] = [0.01468788,0.9853121] vs [0.2957,0.7043], chisq 1189.582
## Mismatched frequencies for 'X:136268740' f[G,A] = [0.2839657,0.7160343] vs [0.4724,0.5276], chisq 425.1277
## Mismatched frequencies for 'X:136314814' f[G,A] = [0.4510404,0.5489596] vs [0.621,0.379], chisq 359.0446
## Mismatched frequencies for 'X:136350963' f[G,A] = [0.09424724,0.9057528] vs [0.3729,0.6271], chisq 1016.887
## Mismatched frequencies for 'X:136354195' f[A,G] = [0.0624235,0.9375765] vs [0.342,0.658], chisq 1072.93
## Mismatched frequencies for 'X:136374461' f[A,G] = [0.2062423,0.7937577] vs [0.459,0.541], chisq 771.4409
## Mismatched frequencies for 'X:136434254' f[A,G] = [0.02631579,0.9736842] vs [0.3112,0.6888], chisq 1182.179
## Mismatched frequencies for 'X:136450688' f[G,T] = [0.4877601,0.5122399] vs [0.6675,0.3325], chisq 422.2344
## Mismatched frequencies for 'X:136505579' f[T,C] = [0.4360465,0.5639535] vs [0.6228,0.3772], chisq 433.6066
## Mismatched frequencies for 'X:136524247' f[A,G] = [0.3133415,0.6866585] vs [0.5091,0.4909], chisq 455.2708
## Mismatched frequencies for 'X:136537452' f[G,A] = [0.3139535,0.6860465] vs [0.5093,0.4907], chisq 453.3491
## Mismatched frequencies for 'X:136544868' f[G,A] = [0.4400245,0.5599755] vs [0.6138,0.3862], chisq 372.9511
## Mismatched frequencies for 'X:136598435' f[T,C] = [0.2258262,0.7741738] vs [0.444,0.556], chisq 578.6789
## Mismatched frequencies for 'X:136657017' f[T,C] = [0.2582619,0.7417381] vs [0.4634,0.5366], chisq 505.9915
## Mismatched frequencies for 'X:136675798' f[C,T] = [0.4406365,0.5593635] vs [0.6161,0.3839], chisq 380.9049
## Mismatched frequencies for 'X:136783739' f[A,G] = [0.1866585,0.8133415] vs [0.4233,0.5767], chisq 691.8455
## Mismatched frequencies for 'X:136937083' f[A,G] = [0.2429621,0.7570379] vs [0.4481,0.5519], chisq 509.9726
## Mismatched frequencies for 'X:136971511' f[T,C] = [0.1591187,0.8408813] vs [0.4034,0.5966], chisq 751.2277
## Mismatched frequencies for 'X:137000267' f[A,G] = [0.124847,0.875153] vs [0.3747,0.6253], chisq 812.7719
## Mismatched frequencies for 'X:137002815' f[C,T] = [0.4094247,0.5905753] vs [0.5748,0.4252], chisq 329.5085
## Mismatched frequencies for 'X:137074124' f[A,G] = [0.378213,0.621787] vs [0.5601,0.4399], chisq 395.9061
## Mismatched frequencies for 'X:137078796' f[G,C] = [0.06609547,0.9339045] vs [0.3161,0.6839], chisq 895.4385
## Mismatched frequencies for 'X:137154059' f[C,G] = [0.03671971,0.9632803] vs [0.3049,0.6951], chisq 1058.378
## Mismatched frequencies for 'X:137300170' f[G,C] = [0.03794369,0.9620563] vs [0.3113,0.6887], chisq 1085.806
## Mismatched frequencies for 'X:137310368' f[A,G] = [0.3895349,0.6104651] vs [0.5696,0.4304], chisq 389.4804
## Mismatched frequencies for 'X:137451355' f[T,C] = [0.04651163,0.9534883] vs [0.3034,0.6966], chisq 972.1167
## Mismatched frequencies for 'X:137535892' f[T,C] = [0.04651163,0.9534883] vs [0.3016,0.6984], chisq 961.9899
## Mismatched frequencies for 'X:137651714' f[G,T] = [0.04406365,0.9559364] vs [0.2995,0.7005], chisq 969.2004
## Mismatched frequencies for 'X:137852982' f[G,T] = [0.01835985,0.9816402] vs [0.2871,0.7129], chisq 1107.594
## Mismatched frequencies for 'X:137857818' f[C,T] = [0.1976744,0.8023256] vs [0.424,0.576], chisq 631.9981
## Mismatched frequencies for 'X:137943387' f[A,G] = [0.2992656,0.7007344] vs [0.5014,0.4986], chisq 485.8272
## Mismatched frequencies for 'X:137984544' f[T,C] = [0.3408813,0.6591187] vs [0.5282,0.4718], chisq 416.9361
## Mismatched frequencies for 'X:137993973' f[A,G] = [0.3035496,0.6964504] vs [0.5042,0.4958], chisq 478.5443
## Mismatched frequencies for 'X:138017328' f[A,G] = [0.1799266,0.8200734] vs [0.3862,0.6138], chisq 543.6048
## Mismatched frequencies for 'X:138031265' f[C,G] = [0.243574,0.756426] vs [0.4461,0.5539], chisq 497.5803
## Mismatched frequencies for 'X:138056412' f[A,G] = [0.1425949,0.8574051] vs [0.3742,0.6258], chisq 697.332
## Mismatched frequencies for 'X:138076183' f[A,G] = [0.1517748,0.8482252] vs [0.382,0.618], chisq 682.2749
## Mismatched frequencies for 'X:138143724' f[A,G] = [0.2986536,0.7013464] vs [0.5014,0.4986], chisq 488.7772
## Mismatched frequencies for 'X:138185609' f[T,C] = [0.2594859,0.7405141] vs [0.4609,0.5391], chisq 488.2691
## Mismatched frequencies for 'X:138236517' f[A,G] = [0.3916769,0.6083232] vs [0.5633,0.4367], chisq 353.0212
## Mismatched frequencies for 'X:138239893' f[C,A] = [0.007343941,0.9926561] vs [0.9845,0.0155], chisq 30205.2
## Mismatched frequencies for 'X:138276345' f[G,C] = [0.1689106,0.8310894] vs [0.3824,0.6176], chisq 585.3334
## Mismatched frequencies for 'X:138309758' f[A,G] = [0.2845777,0.7154223] vs [0.4812,0.5188], chisq 461.6531
## Mismatched frequencies for 'X:138340643' f[C,T] = [0.128519,0.871481] vs [0.3776,0.6224], chisq 804.6827
## Mismatched frequencies for 'X:138385782' f[G,A] = [0.130355,0.8696451] vs [0.3925,0.6075], chisq 876.7837
## Mismatched frequencies for 'X:138400875' f[C,T] = [0.1150551,0.8849449] vs [0.3812,0.6188], chisq 916.3588
## Mismatched frequencies for 'X:138508247' f[G,A] = [0.2992656,0.7007344] vs [0.495,0.505], chisq 455.9742
## Mismatched frequencies for 'X:138571159' f[G,A] = [0.2766218,0.7233782] vs [0.4937,0.5063], chisq 561.1982
## Mismatched frequencies for 'X:138589014' f[A,C] = [0.2753978,0.7246022] vs [0.4924,0.5076], chisq 560.961
## Mismatched frequencies for 'X:138615521' f[C,T] = [0.4320686,0.5679315] vs [0.5952,0.4048], chisq 324.4241
## Mismatched frequencies for 'X:138622254' f[T,C] = [0.06425948,0.9357405] vs [0.3374,0.6626], chisq 1031.198
## Mismatched frequencies for 'X:138631215' f[G,A] = [0.04895961,0.9510404] vs [0.3216,0.6784], chisq 1057.749
## Mismatched frequencies for 'X:138655305' f[T,C] = [0.4651163,0.5348837] vs [0.6233,0.3767], chisq 311.9593
## Mismatched frequencies for 'X:138656162' f[G,C] = [0.4773562,0.5226438] vs [0.6334,0.3666], chisq 306.5977
## Mismatched frequencies for 'X:138720703' f[T,C] = [0.3188494,0.6811506] vs [0.5202,0.4798], chisq 481.51
## Mismatched frequencies for 'X:138769897' f[G,A] = [0.07405141,0.9259486] vs [0.3394,0.6606], chisq 968.647
## Mismatched frequencies for 'X:138798494' f[C,T] = [0.08996328,0.9100367] vs [0.3589,0.6411], chisq 964.9716
## Mismatched frequencies for 'X:138897130' f[A,C] = [0.99082,0.009179926] vs [0.2925,0.7075], chisq 6312.668
## Mismatched frequencies for 'X:139067894' f[C,T] = [0.1946144,0.8053855] vs [0.4489,0.5511], chisq 785.324
## Mismatched frequencies for 'X:139102248' f[T,G] = [0.0997552,0.9002448] vs [0.36,0.64], chisq 901.0767
## Mismatched frequencies for 'X:139135019' f[C,T] = [0.1988984,0.8011016] vs [0.4431,0.5569], chisq 726.4995
## Mismatched frequencies for 'X:139140262' f[A,G] = [0.1126071,0.8873929] vs [0.3742,0.6258], chisq 892.7809
## Mismatched frequencies for 'X:139211667' f[A,G] = [0.02876377,0.9712362] vs [0.2943,0.7057], chisq 1062.127
## Mismatched frequencies for 'X:139230891' f[C,A] = [0.03916769,0.9608323] vs [0.3077,0.6923], chisq 1054.842
## Mismatched frequencies for 'X:139291285' f[T,C] = [0.02998776,0.9700123] vs [0.2926,0.7074], chisq 1042.359
## Mismatched frequencies for 'X:139589364' f[T,C] = [0.2821297,0.7178702] vs [0.477,0.523], chisq 454.0351
## Mismatched frequencies for 'X:139599663' f[G,A] = [0.04895961,0.9510404] vs [0.3208,0.6792], chisq 1053.045
## Mismatched frequencies for 'X:139606415' f[C,A] = [0.05079559,0.9492044] vs [0.3146,0.6854], chisq 1002.582
## Mismatched frequencies for 'X:139616262' f[A,G] = [0.2172583,0.7827417] vs [0.437,0.563], chisq 589.7696
## Mismatched frequencies for 'X:139620091' f[A,G] = [0.1187271,0.881273] vs [0.3647,0.6353], chisq 798.0506
## Mismatched frequencies for 'X:139703772' f[C,A] = [0.5250918,0.4749082] vs [0.6796,0.3204], chisq 318.401
## Mismatched frequencies for 'X:139728231' f[G,A] = [0.3518972,0.6481028] vs [0.5323,0.4677], chisq 386.9143
## Mismatched frequencies for 'X:139728660' f[C,T] = [0.5281518,0.4718482] vs [0.68,0.32], chisq 307.8273
## Mismatched frequencies for 'X:139767051' f[G,C] = [0.3225214,0.6774786] vs [0.4862,0.5138], chisq 319.2403
## Mismatched frequencies for 'X:139771010' f[T,C] = [0.3592411,0.6407589] vs [0.5318,0.4682], chisq 354.0094
## Mismatched frequencies for 'X:139804618' f[T,C] = [0.378825,0.621175] vs [0.5456,0.4544], chisq 331.5578
## Mismatched frequencies for 'X:139834666' f[C,T] = [0.0997552,0.9002448] vs [0.367,0.633], chisq 941.5826
## Mismatched frequencies for 'X:139844118' f[G,A] = [0.4351285,0.5648715] vs [0.6065,0.3935], chisq 360.6988
## Mismatched frequencies for 'X:139844407' f[A,C] = [0.5189719,0.4810281] vs [0.687,0.313], chisq 380.1089
## Mismatched frequencies for 'X:139845866' f[C,T] = [0.1450428,0.8549572] vs [0.3734,0.6266], chisq 678.3505
## Mismatched frequencies for 'X:139849750' f[C,G] = [0.3384333,0.6615667] vs [0.5082,0.4918], chisq 342.3673
## Mismatched frequencies for 'X:139863318' f[C,T] = [0.1340269,0.8659731] vs [0.3579,0.6421], chisq 665.6156
## Mismatched frequencies for 'X:139926795' f[G,A] = [0.1731946,0.8268054] vs [0.4091,0.5909], chisq 696.1782
## Mismatched frequencies for 'X:139936408' f[G,C] = [0.3518972,0.6481028] vs [0.5309,0.4691], chisq 380.8735
## Mismatched frequencies for 'X:139965758' f[C,T] = [0.1982864,0.8017136] vs [0.4194,0.5806], chisq 605.2732
## Mismatched frequencies for 'X:139982519' f[G,A] = [0.1321909,0.8678091] vs [0.3825,0.6175], chisq 807.8122
## Mismatched frequencies for 'X:139985284' f[C,A] = [0.4100367,0.5899633] vs [0.5924,0.4076], chisq 404.2464
## Mismatched frequencies for 'X:140008515' f[C,T] = [0.2656059,0.7343941] vs [0.4671,0.5329], chisq 487.3259
## Mismatched frequencies for 'X:140025074' f[A,C] = [0.2662179,0.7337821] vs [0.4805,0.5195], chisq 548.6927
## Mismatched frequencies for 'X:140040600' f[C,T] = [0.1933905,0.8066096] vs [0.4427,0.5573], chisq 757.6395
## Mismatched frequencies for 'X:140042859' f[A,G] = [0.2588739,0.7411261] vs [0.472,0.528], chisq 544.3807
## Mismatched frequencies for 'X:140063295' f[A,G] = [0.2594859,0.7405141] vs [0.4547,0.5453], chisq 459.9389
## Mismatched frequencies for 'X:140250546' f[G,A] = [0.378213,0.621787] vs [0.5578,0.4422], chisq 385.6812
## Mismatched frequencies for 'X:140274514' f[T,C] = [0.3965728,0.6034272] vs [0.5621,0.4379], chisq 328.3077
## Mismatched frequencies for 'X:140277047' f[A,G] = [0.3843329,0.615667] vs [0.5586,0.4414], chisq 363.3277
## Mismatched frequencies for 'X:140430391' f[G,T] = [0.504284,0.495716] vs [0.6705,0.3295], chisq 363.1608
## Mismatched frequencies for 'X:140434569' f[G,A] = [0.1915545,0.8084455] vs [0.4329,0.5671], chisq 714.5123
## Mismatched frequencies for 'X:140439277' f[T,C] = [0.3157895,0.6842105] vs [0.5223,0.4777], chisq 506.5225
## Mismatched frequencies for 'X:140450241' f[G,A] = [0.2925337,0.7074664] vs [0.514,0.486], chisq 582.6093
## Mismatched frequencies for 'X:140470070' f[A,G] = [0.6028151,0.3971848] vs [0.745,0.255], chisq 305.9799
## Mismatched frequencies for 'X:140481449' f[G,T] = [0.3011016,0.6988984] vs [0.521,0.479], chisq 574.3011
## Mismatched frequencies for 'X:140794185' f[C,T] = [0.8800489,0.119951] vs [0.9801,0.0199], chisq 1053.777
## Mismatched frequencies for 'X:140826288' f[T,G] = [0.5067319,0.493268] vs [0.6684,0.3316], chisq 342.7696
## Mismatched frequencies for 'X:140856171' f[T,G] = [0.120563,0.879437] vs [0.3815,0.6185], chisq 879.9971
## Mismatched frequencies for 'X:140865253' f[T,C] = [0.999388,0.0006119951] vs [0.9117,0.0883], chisq 309.2032
## Mismatched frequencies for 'X:140866480' f[T,G] = [0.4547124,0.5452876] vs [0.6132,0.3868], chisq 310.4196
## Mismatched frequencies for 'X:140869927' f[T,G] = [0.3347613,0.6652387] vs [0.5174,0.4826], chisq 396.169
## Mismatched frequencies for 'X:140895244' f[G,A] = [0.3470012,0.6529988] vs [0.5345,0.4655], chisq 418.0368
## Mismatched frequencies for 'X:140928533' f[G,A] = [0.4651163,0.5348837] vs [0.6246,0.3754], chisq 317.4526
## Mismatched frequencies for 'X:140945859' f[C,T] = [0.5336598,0.4663403] vs [0.6938,0.3062], chisq 349.4394
## Mismatched frequencies for 'X:140948747' f[A,G] = [0.4498164,0.5501836] vs [0.6158,0.3842], chisq 341.0194
## Mismatched frequencies for 'X:140959547' f[T,C] = [0.3518972,0.6481028] vs [0.5125,0.4875], chisq 306.3435
## Mismatched frequencies for 'X:140964016' f[A,G] = [0.3488372,0.6511628] vs [0.5347,0.4653], chisq 410.7938
## Mismatched frequencies for 'X:140983064' f[G,A] = [0.05263158,0.9473684] vs [0.3244,0.6756], chisq 1045.17
## Mismatched frequencies for 'X:140983127' f[G,A] = [0.08078335,0.9192166] vs [0.3425,0.6575], chisq 936.8546
## Mismatched frequencies for 'X:140987820' f[A,C] = [0.4902081,0.5097919] vs [0.6488,0.3512], chisq 321.9404
## Mismatched frequencies for 'X:141043089' f[G,A] = [0.2674419,0.7325581] vs [0.4687,0.5313], chisq 485.8631
## Mismatched frequencies for 'X:141076009' f[T,C] = [0.3182374,0.6817625] vs [0.5107,0.4893], chisq 440.0167
## Mismatched frequencies for 'X:141081670' f[A,G] = [0.0997552,0.9002448] vs [0.3572,0.6428], chisq 885.1226
## Mismatched frequencies for 'X:141093353' f[T,G] = [0.3011016,0.6988984] vs [0.5128,0.4872], chisq 532.3582
## Mismatched frequencies for 'X:141104595' f[C,A] = [0.07955936,0.9204406] vs [0.3485,0.6515], chisq 980.6637
## Mismatched frequencies for 'X:141168707' f[A,C] = [0.06976744,0.9302326] vs [0.3339,0.6661], chisq 968.8635
## Mismatched frequencies for 'X:141181975' f[C,T] = [0.3390453,0.6609547] vs [0.5388,0.4612], chisq 474.7022
## Mismatched frequencies for 'X:141184587' f[T,C] = [0.3115055,0.6884945] vs [0.5367,0.4633], chisq 602.9213
## Mismatched frequencies for 'X:141188358' f[G,A] = [0.5152999,0.4847001] vs [0.6722,0.3278], chisq 324.7422
## Mismatched frequencies for 'X:141188454' f[C,T] = [0.03243574,0.9675643] vs [0.3054,0.6946], chisq 1096.325
## Mismatched frequencies for 'X:141234260' f[A,C] = [0.3561811,0.6438189] vs [0.5564,0.4436], chisq 478.8857
## Mismatched frequencies for 'X:141263753' f[A,C] = [0.07037944,0.9296206] vs [0.331,0.669], chisq 947.6489
## Mismatched frequencies for 'X:141268600' f[G,A] = [0.2735618,0.7264382] vs [0.4902,0.5098], chisq 559.3579
## Mismatched frequencies for 'X:141269586' f[A,G] = [0.2735618,0.7264382] vs [0.4895,0.5105], chisq 555.8339
## Mismatched frequencies for 'X:141290865' f[C,T] = [0.3053856,0.6946145] vs [0.4985,0.5015], chisq 443.5695
## Mismatched frequencies for 'X:141315910' f[G,A] = [0.1884945,0.8115055] vs [0.4175,0.5825], chisq 650.7039
## Mismatched frequencies for 'X:141322841' f[G,A] = [0.5183598,0.4816402] vs [0.6702,0.3298], chisq 303.4831
## Mismatched frequencies for 'X:141328012' f[G,A] = [0.3592411,0.6407589] vs [0.5433,0.4567], chisq 403.4841
## Mismatched frequencies for 'X:141339722' f[T,C] = [0.05385557,0.9461444] vs [0.3169,0.6831], chisq 992.0618
## Mismatched frequencies for 'X:141351978' f[C,T] = [0.2166463,0.7833537] vs [0.447,0.553], chisq 644.3475
## Mismatched frequencies for 'X:141416984' f[G,T] = [0.05813954,0.9418604] vs [0.3274,0.6726], chisq 1019.727
## Mismatched frequencies for 'X:141452927' f[T,C] = [0.2998776,0.7001224] vs [0.4836,0.5164], chisq 402.659
## Mismatched frequencies for 'X:141467629' f[A,G] = [0.2784578,0.7215422] vs [0.4651,0.5349], chisq 418.245
## Mismatched frequencies for 'X:141497792' f[T,C] = [0.01040392,0.9895961] vs [0.2908,0.7092], chisq 1198.057
## Mismatched frequencies for 'X:141524626' f[T,C] = [0.131579,0.8684211] vs [0.3832,0.6168], chisq 815.727
## Mismatched frequencies for 'X:141572805' f[A,G] = [0.378213,0.621787] vs [0.5689,0.4311], chisq 436.4773
## Mismatched frequencies for 'X:141587390' f[A,C] = [0.3268054,0.6731946] vs [0.519,0.481], chisq 438.7125
## Mismatched frequencies for 'X:141611342' f[G,A] = [0.4075887,0.5924113] vs [0.5959,0.4041], chisq 431.8532
## Mismatched frequencies for 'X:141727602' f[A,G] = [0.05140759,0.9485924] vs [0.3153,0.6847], chisq 1001.844
## Mismatched frequencies for 'X:141780570' f[A,C] = [0.4106487,0.5893513] vs [0.6066,0.3934], chisq 470.8382
## Mismatched frequencies for 'X:141790276' f[A,G] = [0.2943696,0.7056304] vs [0.5066,0.4934], chisq 535.2962
## Mismatched frequencies for 'X:141799110' f[T,G] = [0.4638923,0.5361077] vs [0.621,0.379], chisq 307.118
## Mismatched frequencies for 'X:141936058' f[G,A] = [0.379437,0.620563] vs [0.5547,0.4453], chisq 367.0124
## Mismatched frequencies for 'X:141941931' f[C,A] = [0.2044064,0.7955936] vs [0.4085,0.5915], chisq 519.9531
## Mismatched frequencies for 'X:141945401' f[A,G] = [0.3647491,0.6352509] vs [0.5477,0.4523], chisq 399.0549
## Mismatched frequencies for 'X:141955384' f[C,T] = [0.2827417,0.7172583] vs [0.4957,0.5043], chisq 539.8412
## Mismatched frequencies for 'X:142071488' f[T,G] = [0.3261934,0.6738066] vs [0.5358,0.4642], chisq 522.378
## Mismatched frequencies for 'X:142072477' f[C,T] = [0.1419829,0.8580172] vs [0.4016,0.5984], chisq 851.2985
## Mismatched frequencies for 'X:142100851' f[G,A] = [0.1499388,0.8500612] vs [0.3954,0.6046], chisq 764.971
## Mismatched frequencies for 'X:142101651' f[G,A] = [0.4565483,0.5434517] vs [0.6309,0.3691], chisq 381.1818
## Mismatched frequencies for 'X:142126677' f[T,C] = [0.4137087,0.5862913] vs [0.6006,0.3994], chisq 426.7362
## Mismatched frequencies for 'X:142128914' f[G,A] = [0.1193391,0.8806609] vs [0.3615,0.6385], chisq 776.6393
## Mismatched frequencies for 'X:142129735' f[C,T] = [0.4804161,0.5195838] vs [0.6405,0.3595], chisq 324.9514
## Mismatched frequencies for 'X:142168190' f[T,C] = [0.07649939,0.9235006] vs [0.3201,0.6799], chisq 842.5291
## Mismatched frequencies for 'X:142419633' f[T,C] = [0.2215422,0.7784578] vs [0.4704,0.5296], chisq 743.6775
## Mismatched frequencies for 'X:142637742' f[A,C] = [0.3616891,0.6383109] vs [0.5209,0.4791], chisq 301.0992
## Mismatched frequencies for 'X:142660887' f[A,G] = [0.2129743,0.7870257] vs [0.4285,0.5715], chisq 570.6761
## Mismatched frequencies for 'X:142680258' f[G,A] = [0.2411261,0.7588739] vs [0.4507,0.5493], chisq 531.6044
## Mismatched frequencies for 'X:142701244' f[A,G] = [0.4681763,0.5318238] vs [0.6319,0.3681], chisq 336.7773
## Mismatched frequencies for 'X:142711939' f[C,T] = [0.3310894,0.6689106] vs [0.5219,0.4781], chisq 432.4478
## Mismatched frequencies for 'X:142720238' f[C,T] = [0.4155447,0.5844553] vs [0.6065,0.3935], chisq 447.2526
## Mismatched frequencies for 'X:142722609' f[G,C] = [0.3145655,0.6854345] vs [0.5095,0.4905], chisq 451.4317
## Mismatched frequencies for 'X:142731283' f[T,C] = [0.2206242,0.7793758] vs [0.4482,0.5518], chisq 628.3518
## Mismatched frequencies for 'X:142749741' f[A,C] = [0.3543452,0.6456549] vs [0.5315,0.4685], chisq 373.0843
## Mismatched frequencies for 'X:142756404' f[T,C] = [0.3555692,0.6444308] vs [0.5197,0.4803], chisq 319.9725
## Mismatched frequencies for 'X:142954139' f[A,G] = [0.2637699,0.7362301] vs [0.4761,0.5239], chisq 539.4971
## Mismatched frequencies for 'X:142961967' f[A,G] = [0.1958384,0.8041616] vs [0.4411,0.5589], chisq 733.8339
## Mismatched frequencies for 'X:142967468' f[T,G] = [0.3335373,0.6664627] vs [0.517,0.483], chisq 399.7509
## Mismatched frequencies for 'X:142977967' f[A,G] = [0.1872705,0.8127295] vs [0.4229,0.5771], chisq 686.1137
## Mismatched frequencies for 'X:143031385' f[C,T] = [0.3020196,0.6979804] vs [0.5071,0.4929], chisq 499.7794
## Mismatched frequencies for 'X:143071335' f[G,A] = [0.08996328,0.9100367] vs [0.3677,0.6323], chisq 1017.335
## Mismatched frequencies for 'X:143237327' f[C,T] = [0.1413709,0.8586291] vs [0.3766,0.6234], chisq 717.429
## Mismatched frequencies for 'X:143246090' f[G,A] = [0.4565483,0.5434517] vs [0.6199,0.3801], chisq 331.5235
## Mismatched frequencies for 'X:143355780' f[T,C] = [0.3066095,0.6933904] vs [0.5096,0.4904], chisq 489.5364
## Mismatched frequencies for 'X:143421013' f[A,G] = [0.4100367,0.5899633] vs [0.5692,0.4308], chisq 304.508
## Mismatched frequencies for 'X:143628953' f[C,T] = [0.7233782,0.2766218] vs [0.8539,0.1461], chisq 380.1474
## Mismatched frequencies for 'X:143631443' f[G,T] = [0.09791922,0.9020808] vs [0.3026,0.6974], chisq 611.8777
## Mismatched frequencies for 'X:143679310' f[A,G] = [0.2399021,0.7600979] vs [0.4698,0.5302], chisq 634.3752
## Mismatched frequencies for 'X:143696815' f[T,C] = [0.2276622,0.7723378] vs [0.4563,0.5437], chisq 631.3973
## Mismatched frequencies for 'X:143701514' f[C,T] = [0.2282742,0.7717258] vs [0.4523,0.5477], chisq 607.3555
## Mismatched frequencies for 'X:143705415' f[G,T] = [0.2368421,0.7631579] vs [0.4702,0.5298], chisq 653.591
## Mismatched frequencies for 'X:143709549' f[G,T] = [0.4479804,0.5520196] vs [0.6098,0.3902], chisq 322.6452
## Mismatched frequencies for 'X:143710049' f[A,G] = [0.1897185,0.8102815] vs [0.4285,0.5715], chisq 701.6148
## Mismatched frequencies for 'X:143716550' f[A,G] = [0.1572827,0.8427172] vs [0.398,0.602], chisq 733.2999
## Mismatched frequencies for 'X:143720598' f[G,A] = [0.08996328,0.9100367] vs [0.3517,0.6483], chisq 923.1645
## Mismatched frequencies for 'X:143722036' f[G,A] = [0.4088127,0.5911873] vs [0.5716,0.4284], chisq 318.8297
## Mismatched frequencies for 'X:143735396' f[G,A] = [0.4173807,0.5826193] vs [0.5804,0.4196], chisq 321.1355
## Mismatched frequencies for 'X:143944567' f[T,C] = [0.3139535,0.6860465] vs [0.5561,0.4439], chisq 699.6137
## Mismatched frequencies for 'X:143949304' f[A,C] = [0.3329254,0.6670747] vs [0.4944,0.5056], chisq 310.1874
## Mismatched frequencies for 'X:144010480' f[G,A] = [0.04895961,0.9510404] vs [0.306,0.694], chisq 967.8338
## Mismatched frequencies for 'X:144111022' f[T,C] = [0.1456548,0.8543451] vs [0.4014,0.5986], chisq 825.9631
## Mismatched frequencies for 'X:144174392' f[G,C] = [0.1138311,0.8861689] vs [0.3521,0.6479], chisq 762.03
## Mismatched frequencies for 'X:144228315' f[G,A] = [0.3543452,0.6456549] vs [0.5299,0.4701], chisq 366.3135
## Mismatched frequencies for 'X:144238715' f[G,A] = [0.5991432,0.4008568] vs [0.748,0.252], chisq 337.2859
## Mismatched frequencies for 'X:144249304' f[T,G] = [0.2264382,0.7735618] vs [0.4473,0.5527], chisq 591.9242
## Mismatched frequencies for 'X:144269520' f[A,G] = [0.3017136,0.6982864] vs [0.5161,0.4839], chisq 545.896
## Mismatched frequencies for 'X:144273872' f[A,G] = [0.376989,0.623011] vs [0.5839,0.4161], chisq 517.2004
## Mismatched frequencies for 'X:144280461' f[T,C] = [0.3335373,0.6664627] vs [0.4995,0.5005], chisq 327.4477
## Mismatched frequencies for 'X:144281044' f[T,C] = [0.2809058,0.7190943] vs [0.4906,0.5094], chisq 523.9476
## Mismatched frequencies for 'X:144344132' f[G,A] = [0.06793146,0.9320685] vs [0.336,0.664], chisq 994.8872
## Mismatched frequencies for 'X:144353437' f[G,T] = [0.09608323,0.9039168] vs [0.3542,0.6458], chisq 893.8816
## Mismatched frequencies for 'X:144359865' f[T,C] = [0.08567932,0.9143207] vs [0.3582,0.6418], chisq 992.3856
## Mismatched frequencies for 'X:144408323' f[G,A] = [0.08139535,0.9186047] vs [0.3446,0.6554], chisq 944.4546
## Mismatched frequencies for 'X:144431697' f[C,T] = [0.08200734,0.9179926] vs [0.3546,0.6454], chisq 998.3715
## Mismatched frequencies for 'X:144462477' f[T,C] = [0.5287638,0.4712362] vs [0.6822,0.3178], chisq 315.2731
## Mismatched frequencies for 'X:144479949' f[C,A] = [0.1780906,0.8219094] vs [0.4149,0.5851], chisq 697.8392
## Mismatched frequencies for 'X:144489488' f[C,T] = [0.497552,0.502448] vs [0.6593,0.3407], chisq 339.0426
## Mismatched frequencies for 'X:144495331' f[C,G] = [0.3916769,0.6083232] vs [0.5786,0.4214], chisq 421.3494
## Mismatched frequencies for 'X:144502614' f[A,G] = [0.2992656,0.7007344] vs [0.4978,0.5022], chisq 468.9061
## Mismatched frequencies for 'X:144521754' f[G,A] = [0.2594859,0.7405141] vs [0.464,0.536], chisq 502.7706
## Mismatched frequencies for 'X:144557401' f[C,A] = [0.3084455,0.6915545] vs [0.529,0.471], chisq 577.9116
## Mismatched frequencies for 'X:144663871' f[A,C] = [0.2698898,0.7301102] vs [0.4894,0.5106], chisq 574.435
## Mismatched frequencies for 'X:144665470' f[T,C] = [0.1970624,0.8029376] vs [0.4421,0.5579], chisq 731.998
## Mismatched frequencies for 'X:144673801' f[C,T] = [0.253366,0.746634] vs [0.4787,0.5213], chisq 607.3079
## Mismatched frequencies for 'X:144676210' f[A,C] = [0.3237454,0.6762546] vs [0.5181,0.4819], chisq 448.6254
## Mismatched frequencies for 'X:144739915' f[C,T] = [0.2405141,0.7594859] vs [0.483,0.517], chisq 702.6534
## Mismatched frequencies for 'X:144745505' f[G,A] = [0.2160343,0.7839657] vs [0.4679,0.5321], chisq 762.684
## Mismatched frequencies for 'X:144745606' f[G,T] = [0.4908201,0.50918] vs [0.6757,0.3243], chisq 451.4892
## Mismatched frequencies for 'X:144822545' f[C,T] = [0.3641371,0.6358629] vs [0.5303,0.4697], chisq 328.2153
## Mismatched frequencies for 'X:144883233' f[T,C] = [0.07711139,0.9228886] vs [0.3173,0.6827], chisq 823.0765
## Mismatched frequencies for 'X:144904882' f[T,C] = [0.1346389,0.8653611] vs [0.3747,0.6253], chisq 749.4448
## Mismatched frequencies for 'X:144928559' f[T,C] = [0.1376989,0.8623011] vs [0.388,0.612], chisq 802.4844
## Mismatched frequencies for 'X:144946082' f[A,C] = [0.1015912,0.8984088] vs [0.3569,0.6431], chisq 870.6321
## Mismatched frequencies for 'X:144961624' f[G,A] = [0.4400245,0.5599755] vs [0.635,0.365], chisq 477.7314
## Mismatched frequencies for 'X:145328713' f[A,G] = [0.3959608,0.6040392] vs [0.5739,0.4261], chisq 381.1054
## Mismatched frequencies for 'X:145347110' f[G,A] = [0.3965728,0.6034272] vs [0.5744,0.4256], chisq 380.717
## Mismatched frequencies for 'X:145435246' f[T,C] = [0.118115,0.8818849] vs [0.3584,0.6416], chisq 767.9046
## Mismatched frequencies for 'X:145543291' f[A,C] = [0.5361077,0.4638923] vs [0.6953,0.3047], chisq 346.2219
## Mismatched frequencies for 'X:145544711' f[T,C] = [0.498164,0.501836] vs [0.6525,0.3475], chisq 306.366
## Mismatched frequencies for 'X:145616611' f[C,T] = [0.03794369,0.9620563] vs [0.31,0.69], chisq 1078.174
## Mismatched frequencies for 'X:145626349' f[T,C] = [0.04895961,0.9510404] vs [0.3377,0.6623], chisq 1154.629
## Mismatched frequencies for 'X:145748908' f[T,G] = [0.1597307,0.8402693] vs [0.3993,0.6007], chisq 725.2512
## Mismatched frequencies for 'X:145794165' f[A,G] = [0.6560587,0.3439412] vs [0.9625,0.0375], chisq 4553.783
## Mismatched frequencies for 'X:145938842' f[G,A] = [0.3084455,0.6915545] vs [0.5115,0.4885], chisq 489.7856
## Mismatched frequencies for 'X:145949960' f[C,T] = [0.378825,0.621175] vs [0.5635,0.4365], chisq 408.6028
## Mismatched frequencies for 'X:145980447' f[G,A] = [0.4369645,0.5630355] vs [0.6024,0.3976], chisq 335.2651
## Mismatched frequencies for 'X:145992130' f[G,A] = [0.4332925,0.5667075] vs [0.5988,0.4012], chisq 334.7055
## Mismatched frequencies for 'X:146002069' f[G,A] = [0.3567931,0.6432068] vs [0.5401,0.4599], chisq 399.9435
## Mismatched frequencies for 'X:146045852' f[A,C] = [0.03488372,0.9651163] vs [0.3021,0.6979], chisq 1057.061
## Mismatched frequencies for 'X:146050238' f[T,C] = [0.3078335,0.6921664] vs [0.5104,0.4896], chisq 487.4654
## Mismatched frequencies for 'X:146068624' f[A,G] = [0.3372093,0.6627907] vs [0.5325,0.4675], chisq 453.346
## Report outputs first 5000 mismatches.