RNA (21 samples)						
RNA	APC_tumor_rep1	Tumor	RNA-APC_tumor_rep1	NS51228	/ddn/gs1/project/nextgen/post/wadep2/NS51228-Wade-Liu/NS51228.BM948_20220212_210341.L001.single.fastq.gz	
RNA	APC_tumor_rep2	Tumor	RNA-APC_tumor_rep2	NS51228	/ddn/gs1/project/nextgen/post/wadep2/NS51228-Wade-Liu/NS51228.BM949_20220212_210341.L001.single.fastq.gz	
RNA	APC_tumor_rep3	Tumor	RNA-APC_tumor_rep3	NS51228	/ddn/gs1/project/nextgen/post/wadep2/NS51228-Wade-Liu/NS51228.BM996_20220212_210341.L001.single.fastq.gz	
RNA	AK_tumor_rep1	Tumor	RNA-AK_tumor_rep1	NS51400	/ddn/gs1/project/nextgen/post/wadep2/NS51400-Wade-Liu/NS51400.AK-Tumor-1_20230612_105404.L001.single.fastq.gz	
RNA	AK_tumor_rep2	Tumor	RNA-AK_tumor_rep2	NS51400	/ddn/gs1/project/nextgen/post/wadep2/NS51400-Wade-Liu/NS51400.AK-Tumor-2_20230612_105404.L001.single.fastq.gz	
RNA	AK_tumor_rep3	Tumor	RNA-AK_tumor_rep3	NS51400	/ddn/gs1/project/nextgen/post/wadep2/NS51400-Wade-Liu/NS51400.AK-Tumor-3_20230612_105404.L001.single.fastq.gz	
RNA	AP-tumor-rep1	Tumor	RNA-AP_tumor_rep1	NS51262	/ddn/gs1/project/nextgen/post/wadep2/NS51262-Wade-Liu/NS51262.AP-Tumor-rep1_20220628_163019.L001.single.fastq.gz	
RNA	AP-tumor-rep2	Tumor	RNA-AP_tumor_rep2	NS51262	/ddn/gs1/project/nextgen/post/wadep2/NS51262-Wade-Liu/NS51262.AP-Tumor-rep2_20220628_163019.L001.single.fastq.gz	
RNA	AP-tumor-rep3	Tumor	RNA-AP_tumor_rep3	NS51262	/ddn/gs1/project/nextgen/post/wadep2/NS51262-Wade-Liu/NS51262.AP-Tumor-rep3_20220628_163019.L001.single.fastq.gz	
RNA	AKP-tumor-rep1	Tumor	RNA-AKP_tumor_rep1	NS51324	/ddn/gs1/project/nextgen/post/wadep2/NS51324-Wade-Liu/NS51324.AKP-tumor-rep1_20221214_141315.L001.single.fastq.gz	
RNA	AKP-tumor-rep2	Tumor	RNA-AKP_tumor_rep2	NS51324	/ddn/gs1/project/nextgen/post/wadep2/NS51324-Wade-Liu/NS51324.AKP-tumor-rep2_20221214_141315.L001.single.fastq.gz	
RNA	AKP-tumor-rep3	Tumor	RNA-AKP_tumor_rep3	NS51324	/ddn/gs1/project/nextgen/post/wadep2/NS51324-Wade-Liu/NS51324.AKP-tumor-rep3_20221214_141315.L001.single.fastq.gz	
RNA	AKP-orga-rep1	Organoid	RNA-AKP_orga_rep1	NS51357	/ddn/gs1/project/nextgen/post/wadep2/NS51357-Wade-Liu/NS51357.AKP-orga-rep2_20230315_190818.L001.single.fastq.gz	
RNA	AKP-orga-rep2	Organoid	RNA-AKP_orga_rep2	NS51357	/ddn/gs1/project/nextgen/post/wadep2/NS51357-Wade-Liu/NS51357.AKP-orga-rep1_20230315_190818.L001.single.fastq.gz	
RNA	AP-orga-rep1	Organoid	RNA-AP_orga_rep1	NS51324	/ddn/gs1/project/nextgen/post/wadep2/NS51324-Wade-Liu/NS51324.AP-organoid-rep1_20221214_141315.L001.single.fastq.gz	
RNA	AP-orga-rep2	Organoid	RNA-AP_orga_rep2	NS51324	/ddn/gs1/project/nextgen/post/wadep2/NS51324-Wade-Liu/NS51324.AP-organoid-rep2_20221214_141315.L001.single.fastq.gz	
RNA	AK_orga_rep1	Organoid	RNA-AK_orga_rep1	NS51400	/ddn/gs1/project/nextgen/post/wadep2/NS51400-Wade-Liu/NS51400.AK-Org-1_20230612_105404.L001.single.fastq.gz	
RNA	AK_orga_rep2	Organoid	RNA-AK_orga_rep2	NS51400	/ddn/gs1/project/nextgen/post/wadep2/NS51400-Wade-Liu/NS51400.AK-Org-2_20230612_105404.L001.single.fastq.gz	
RNA	AK_orga_rep3	Organoid	RNA-AK_orga_rep3	NS51400	/ddn/gs1/project/nextgen/post/wadep2/NS51400-Wade-Liu/NS51400.AK-Org-3_20230612_105404.L001.single.fastq.gz	
RNA	APC_orga_rep1	Organoid	RNA-APC_orga_rep1	NS51262	/ddn/gs1/project/nextgen/post/wadep2/NS51262-Wade-Liu/NS51262.APC-Orga-rep1_20220628_163019.L001.single.fastq.gz	
RNA	APC_orga_rep2	Organoid	RNA-APC_orga_rep2	NS51262	/ddn/gs1/project/nextgen/post/wadep2/NS51262-Wade-Liu/NS51262.APC-Orga-rep2_20220628_163019.L001.single.fastq.gz	
						
ATAC (12 samples)						
ATAC	APC_tumor_rep1	Tumor	ATAC-APC_tumor_rep1	NOV0327	/ddn/gs1/project/nextgen/post/wadep2/NOV0327-Wade-Liu/NOVA0327.BM948-ATAC1_20220126_143408.L001.1.fastq.gz	/ddn/gs1/project/nextgen/post/wadep2/NOV0327-Wade-Liu/NOVA0327.BM948-ATAC1_20220126_143408.L001.2.fastq.gz
ATAC	APC_tumor_rep2	Tumor	ATAC-APC_tumor_rep2	NOV0327	/ddn/gs1/project/nextgen/post/wadep2/NOV0327-Wade-Liu/NOVA0327.BM949-ATAC1_20220126_143408.L001.1.fastq.gz	/ddn/gs1/project/nextgen/post/wadep2/NOV0327-Wade-Liu/NOVA0327.BM949-ATAC1_20220126_143408.L001.2.fastq.gz
ATAC	APC_tumor_rep3	Tumor	ATAC-APC_tumor_rep3	NOV0327	/ddn/gs1/project/nextgen/post/wadep2/NOV0327-Wade-Liu/NOVA0327.BM996-ATAC1_20220126_143408.L001.1.fastq.gz	/ddn/gs1/project/nextgen/post/wadep2/NOV0327-Wade-Liu/NOVA0327.BM996-ATAC1_20220126_143408.L001.2.fastq.gz
ATAC	AP-tumor-rep1	Tumor	ATAC-AP_tumor_rep1	NS51265	/ddn/gs1/project/nextgen/post/wadep2/NS51265-Wade-Liu/NS51265.AP-Tumor-ATAC-rep1_20220701_152945.L001.1.fastq.gz	/ddn/gs1/project/nextgen/post/wadep2/NS51265-Wade-Liu/NS51265.AP-Tumor-ATAC-rep1_20220701_152945.L001.2.fastq.gz
ATAC	AP-tumor-rep2	Tumor	ATAC-AP_tumor_rep2	NS51265	/ddn/gs1/project/nextgen/post/wadep2/NS51265-Wade-Liu/NS51265.AP-Tumor-ATAC-rep2_20220701_152945.L001.1.fastq.gz	/ddn/gs1/project/nextgen/post/wadep2/NS51265-Wade-Liu/NS51265.AP-Tumor-ATAC-rep2_20220701_152945.L001.2.fastq.gz
ATAC	AP-tumor-rep3	Tumor	ATAC-AP_tumor_rep3	NS51265	/ddn/gs1/project/nextgen/post/wadep2/NS51265-Wade-Liu/NS51265.AP-Tumor-ATAC-rep3_20220701_152945.L001.1.fastq.gz	/ddn/gs1/project/nextgen/post/wadep2/NS51265-Wade-Liu/NS51265.AP-Tumor-ATAC-rep3_20220701_152945.L001.2.fastq.gz
ATAC	AKP-tumor-rep1	Tumor	ATAC-AKP-tumor_rep1	NS51326	/ddn/gs1/project/nextgen/post/wadep2/NS51326-Wade-Liu/NS51326.AKP-Tumor-ATAC-rep1_20221220_130252.L001.1.fastq.gz	/ddn/gs1/project/nextgen/post/wadep2/NS51326-Wade-Liu/NS51326.AKP-Tumor-ATAC-rep1_20221220_130252.L001.2.fastq.gz
ATAC	AKP-tumor-rep2	Tumor	ATAC-AKP-tumor_rep2	NS51326	/ddn/gs1/project/nextgen/post/wadep2/NS51326-Wade-Liu/NS51326.AKP-Tumor-ATAC-rep2_20221220_130252.L001.1.fastq.gz	/ddn/gs1/project/nextgen/post/wadep2/NS51326-Wade-Liu/NS51326.AKP-Tumor-ATAC-rep2_20221220_130252.L001.2.fastq.gz
ATAC	AKP-tumor-rep3	Tumor	ATAC-AKP-tumor_rep3	NS51326	/ddn/gs1/project/nextgen/post/wadep2/NS51326-Wade-Liu/NS51326.AKP-Tumor-ATAC-rep3_20221220_130252.L001.1.fastq.gz	/ddn/gs1/project/nextgen/post/wadep2/NS51326-Wade-Liu/NS51326.AKP-Tumor-ATAC-rep3_20221220_130252.L001.2.fastq.gz
ATAC	AK_tumor_rep1	Tumor	ATAC-AK_tumor__rep1	NS51399	/ddn/gs1/project/nextgen/post/wadep2/NS51399-Wade-Liu/NS51399.AK-Tumor-ATAC-1_20230608_194825.L001.1.fastq.gz	/ddn/gs1/project/nextgen/post/wadep2/NS51399-Wade-Liu/NS51399.AK-Tumor-ATAC-1_20230608_194825.L001.2.fastq.gz
ATAC	AK_tumor_rep2	Tumor	ATAC-AK_tumor__rep2	NS51399	/ddn/gs1/project/nextgen/post/wadep2/NS51399-Wade-Liu/NS51399.AK-Tumor-ATAC-2_20230608_194825.L001.1.fastq.gz	/ddn/gs1/project/nextgen/post/wadep2/NS51399-Wade-Liu/NS51399.AK-Tumor-ATAC-2_20230608_194825.L001.2.fastq.gz
ATAC	AK_tumor_rep3	Tumor	ATAC-AK_tumor__rep3	NS51399	/ddn/gs1/project/nextgen/post/wadep2/NS51399-Wade-Liu/NS51399.AK-Tumor-ATAC-3_20230608_194825.L001.1.fastq.gz	/ddn/gs1/project/nextgen/post/wadep2/NS51399-Wade-Liu/NS51399.AK-Tumor-ATAC-3_20230608_194825.L001.2.fastq.gz
						
H3k27ac( 12 samples)						
H3K27ac	APC_tumor_rep1	Tumor	H3K27ac-APC_tumor_rep1	NOV0331	/ddn/gs1/project/nextgen/post/wadep2/NOV0331-Wade-Liu/NOVA0331.BM948-K27ac_R1.fastq.gz	/ddn/gs1/project/nextgen/post/wadep2/NOV0331-Wade-Liu/NOVA0331.BM948-K27ac_R2.fastq.gz
H3K27ac	APC_tumor_rep2	Tumor	H3K27ac-APC_tumor_rep2	NOV0331	/ddn/gs1/project/nextgen/post/wadep2/NOV0331-Wade-Liu/NOVA0331.BM949-K27ac_R1.fastq.gz	/ddn/gs1/project/nextgen/post/wadep2/NOV0331-Wade-Liu/NOVA0331.BM949-K27ac_R2.fastq.gz
H3K27ac	APC_tumor_rep3	Tumor	H3K27ac-APC_tumor_rep3	NOV0331	/ddn/gs1/project/nextgen/post/wadep2/NOV0331-Wade-Liu/NOVA0331.BM996-K27ac_R1.fastq.gz	/ddn/gs1/project/nextgen/post/wadep2/NOV0331-Wade-Liu/NOVA0331.BM996-K27ac_R2.fastq.gz
H3K27ac	AP-tumor-rep1	Tumor	H3K27ac-AP_tumor_rep1	NS51265	/ddn/gs1/project/nextgen/post/wadep2/NS51265-Wade-Liu/NS51265.AP-Tumor-K27ac-rep1_20220701_152945.L001.1.fastq.gz	/ddn/gs1/project/nextgen/post/wadep2/NS51265-Wade-Liu/NS51265.AP-Tumor-K27ac-rep1_20220701_152945.L001.2.fastq.gz
H3K27ac	AP-tumor-rep2	Tumor	H3K27ac-AP_tumor_rep2	NS51265	/ddn/gs1/project/nextgen/post/wadep2/NS51265-Wade-Liu/NS51265.AP-Tumor-K27ac-rep2_20220701_152945.L001.1.fastq.gz	/ddn/gs1/project/nextgen/post/wadep2/NS51265-Wade-Liu/NS51265.AP-Tumor-K27ac-rep2_20220701_152945.L001.2.fastq.gz
H3K27ac	AP-tumor-rep3	Tumor	H3K27ac-AP_tumor_rep3	NS51265	/ddn/gs1/project/nextgen/post/wadep2/NS51265-Wade-Liu/NS51265.AP-Tumor-K27ac-rep3_20220701_152945.L001.1.fastq.gz	/ddn/gs1/project/nextgen/post/wadep2/NS51265-Wade-Liu/NS51265.AP-Tumor-K27ac-rep3_20220701_152945.L001.2.fastq.gz
H3K27ac	AK_tumor_rep1	Tumor	H3K27ac-AK_tumor__rep1	NS51399	/ddn/gs1/project/nextgen/post/wadep2/NS51399-Wade-Liu/NS51399.AK-Tumor-K27ac-1_20230608_194825.L001.1.fastq.gz	/ddn/gs1/project/nextgen/post/wadep2/NS51399-Wade-Liu/NS51399.AK-Tumor-K27ac-1_20230608_194825.L001.2.fastq.gz
H3K27ac	AK_tumor_rep2	Tumor	H3K27ac-AK_tumor__rep2	NS51399	/ddn/gs1/project/nextgen/post/wadep2/NS51399-Wade-Liu/NS51399.AK-Tumor-K27ac-2_20230608_194825.L001.1.fastq.gz	/ddn/gs1/project/nextgen/post/wadep2/NS51399-Wade-Liu/NS51399.AK-Tumor-K27ac-2_20230608_194825.L001.2.fastq.gz
H3K27ac	AK_tumor_rep3	Tumor	H3K27ac-AK_tumor__rep3	NS51399	/ddn/gs1/project/nextgen/post/wadep2/NS51399-Wade-Liu/NS51399.AK-Tumor-K27ac-3_20230608_194825.L001.1.fastq.gz	/ddn/gs1/project/nextgen/post/wadep2/NS51399-Wade-Liu/NS51399.AK-Tumor-K27ac-3_20230608_194825.L001.2.fastq.gz
H3K27ac	AKP-tumor-rep1	Tumor	H3K27ac-AKP-tumor-rep1	NS51326	/ddn/gs1/project/nextgen/post/wadep2/NS51326-Wade-Liu/NS51326.AKP-Tumor-K27ac-rep1_20221220_130252.L001.1.fastq.gz	/ddn/gs1/project/nextgen/post/wadep2/NS51326-Wade-Liu/NS51326.AKP-Tumor-K27ac-rep1_20221220_130252.L001.2.fastq.gz
H3K27ac	AKP-tumor-rep2	Tumor	H3K27ac-AKP-tumor-rep2	NS51326	/ddn/gs1/project/nextgen/post/wadep2/NS51326-Wade-Liu/NS51326.AKP-Tumor-K27ac-rep2_20221220_130252.L001.1.fastq.gz	/ddn/gs1/project/nextgen/post/wadep2/NS51326-Wade-Liu/NS51326.AKP-Tumor-K27ac-rep2_20221220_130252.L001.2.fastq.gz
H3K27ac	AKP-tumor-rep3	Tumor	H3K27ac-AKP-tumor-rep3	NS51326	/ddn/gs1/project/nextgen/post/wadep2/NS51326-Wade-Liu/NS51326.AKP-Tumor-K27ac-rep3_20221220_130252.L001.1.fastq.gz	/ddn/gs1/project/nextgen/post/wadep2/NS51326-Wade-Liu/NS51326.AKP-Tumor-K27ac-rep3_20221220_130252.L001.2.fastq.gz