DatasetNOV0093_collapsed_to_symbols.NOV0093.cls
#obese_versus_normal.NOV0093.cls
#obese_versus_normal_repos
PhenotypeNOV0093.cls#obese_versus_normal_repos
Upregulated in class1
GeneSetREACTOME_INNATE_IMMUNE_SYSTEM
Enrichment Score (ES)0.48059565
Normalized Enrichment Score (NES)2.1976297
Nominal p-value0.0
FDR q-value0.22596528
FWER p-Value0.149
Table: GSEA Results Summary



Fig 1: Enrichment plot: REACTOME_INNATE_IMMUNE_SYSTEM   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

PROBEGENE SYMBOLGENE_TITLERANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1CR1CR1
Entrez,  Source
complement component (3b/4b) receptor 1 (Knops blood group)200.4200.0251Yes
2C4BPBC4BPB
Entrez,  Source
complement component 4 binding protein, beta230.4170.0508Yes
3BTKBTK
Entrez,  Source
Bruton agammaglobulinemia tyrosine kinase280.4120.0761Yes
4NLRC4780.3760.0971Yes
5TLR6TLR6
Entrez,  Source
toll-like receptor 61040.3650.1185Yes
6TLR8TLR8
Entrez,  Source
toll-like receptor 81440.3460.1380Yes
7PSTPIP1PSTPIP1
Entrez,  Source
proline-serine-threonine phosphatase interacting protein 11540.3440.1589Yes
8NLRP31740.3350.1787Yes
9C1QCC1QC
Entrez,  Source
complement component 1, q subcomponent, C chain2070.3260.1974Yes
10C1QBC1QB
Entrez,  Source
complement component 1, q subcomponent, B chain2440.3170.2153Yes
11C1QAC1QA
Entrez,  Source
complement component 1, q subcomponent, A chain2630.3130.2338Yes
12TLR7TLR7
Entrez,  Source
toll-like receptor 72920.3060.2514Yes
13C2C2
Entrez,  Source
complement component 23750.2920.2656Yes
14LBPLBP
Entrez,  Source
lipopolysaccharide binding protein3910.2900.2829Yes
15MASP1MASP1
Entrez,  Source
mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)5620.2670.2913Yes
16LY86LY86
Entrez,  Source
lymphocyte antigen 866090.2610.3052Yes
17NOD29480.2320.3035Yes
18CCR2CCR2
Entrez,  Source
chemokine (C-C motif) receptor 29590.2310.3173Yes
19CD180CD180
Entrez,  Source
CD180 molecule10120.2280.3289Yes
20IKBKEIKBKE
Entrez,  Source
inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon10830.2230.3393Yes
21TLR10TLR10
Entrez,  Source
toll-like receptor 1011310.2200.3507Yes
22LGMNLGMN
Entrez,  Source
legumain13350.2090.3539Yes
23DNM1DNM1
Entrez,  Source
dynamin 114430.2020.3614Yes
24DEFB124DEFB124
Entrez,  Source
defensin, beta 12414610.2010.3730Yes
25CARD9CARD9
Entrez,  Source
caspase recruitment domain family, member 915350.1990.3818Yes
26P2RX7P2RX7
Entrez,  Source
purinergic receptor P2X, ligand-gated ion channel, 717110.1910.3853Yes
27CD4CD4
Entrez,  Source
CD4 molecule17360.1900.3959Yes
28TLR2TLR2
Entrez,  Source
toll-like receptor 217780.1880.4056Yes
29BIRC3BIRC3
Entrez,  Source
baculoviral IAP repeat-containing 317810.1880.4172Yes
30C7C7
Entrez,  Source
complement component 718140.1870.4272Yes
31ZBP1ZBP1
Entrez,  Source
Z-DNA binding protein 119340.1820.4328Yes
32TLR1TLR1
Entrez,  Source
toll-like receptor 119680.1810.4425Yes
33RIPK2RIPK2
Entrez,  Source
receptor-interacting serine-threonine kinase 221840.1730.4429Yes
34TNFAIP3TNFAIP3
Entrez,  Source
tumor necrosis factor, alpha-induced protein 322120.1720.4522Yes
35CD14CD14
Entrez,  Source
CD14 molecule22130.1720.4629Yes
36TIRAPTIRAP
Entrez,  Source
toll-interleukin 1 receptor (TIR) domain containing adaptor protein25210.1630.4583Yes
37CFBCFB
Entrez,  Source
complement factor B25540.1620.4668Yes
38TLR5TLR5
Entrez,  Source
toll-like receptor 526060.1600.4743Yes
39LY96LY96
Entrez,  Source
lymphocyte antigen 9626800.1580.4806Yes
40CTSSCTSS
Entrez,  Source
cathepsin S31740.1450.4660No
41C4BPAC4BPA
Entrez,  Source
complement component 4 binding protein, alpha35480.1360.4566No
42PANX1PANX1
Entrez,  Source
pannexin 137510.1310.4551No
43TRAF3TRAF3
Entrez,  Source
TNF receptor-associated factor 342110.1200.4406No
44CD55CD55
Entrez,  Source
CD55 molecule, decay accelerating factor for complement (Cromer blood group)42140.1190.4479No
45CFDCFD
Entrez,  Source
complement factor D (adipsin)46970.1090.4316No
46CDK147790.1070.4344No
47MASP2MASP2
Entrez,  Source
mannan-binding lectin serine peptidase 248290.1070.4387No
48RPS6KA1RPS6KA1
Entrez,  Source
ribosomal protein S6 kinase, 90kDa, polypeptide 151750.1000.4284No
49CFHCFH
Entrez,  Source
complement factor H54540.0940.4209No
50C1SC1S
Entrez,  Source
complement component 1, s subcomponent55570.0920.4218No
51C3C3
Entrez,  Source
complement component 355620.0920.4273No
52C5C5
Entrez,  Source
complement component 560590.0830.4088No
53PELI1PELI1
Entrez,  Source
pellino homolog 1 (Drosophila)61810.0810.4080No
54MEFVMEFV
Entrez,  Source
Mediterranean fever63380.0790.4055No
55TLR3TLR3
Entrez,  Source
toll-like receptor 366280.0740.3962No
56MAP2K1MAP2K1
Entrez,  Source
mitogen-activated protein kinase kinase 168270.0700.3911No
57AIM2AIM2
Entrez,  Source
absent in melanoma 269990.0680.3872No
58PPP2R1BPPP2R1B
Entrez,  Source
protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), beta isoform70970.0660.3866No
59IRAK2IRAK2
Entrez,  Source
interleukin-1 receptor-associated kinase 272650.0630.3826No
60C4AC4A
Entrez,  Source
complement component 4A (Rodgers blood group)78620.0540.3574No
61UBE2D1UBE2D1
Entrez,  Source
ubiquitin-conjugating enzyme E2D 1 (UBC4/5 homolog, yeast)79600.0520.3561No
62CTSBCTSB
Entrez,  Source
cathepsin B81990.0490.3477No
63NOD184800.0450.3371No
64AGERAGER
Entrez,  Source
advanced glycosylation end product-specific receptor85360.0440.3372No
65MYD88MYD88
Entrez,  Source
myeloid differentiation primary response gene (88)85470.0440.3394No
66DEFB1DEFB1
Entrez,  Source
defensin, beta 188810.0390.3260No
67C6C6
Entrez,  Source
complement component 690530.0370.3201No
68NLRX191280.0360.3188No
69CTSKCTSK
Entrez,  Source
cathepsin K (pycnodysostosis)92720.0340.3140No
70IRAK1IRAK1
Entrez,  Source
interleukin-1 receptor-associated kinase 193140.0340.3142No
71HSP90B1HSP90B1
Entrez,  Source
heat shock protein 90kDa beta (Grp94), member 194740.0320.3085No
72DUSP3DUSP3
Entrez,  Source
dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)94920.0310.3097No
73CNPY395310.0310.3098No
74TXNTXN
Entrez,  Source
thioredoxin96040.0300.3082No
75MAP2K3MAP2K3
Entrez,  Source
mitogen-activated protein kinase kinase 396710.0290.3069No
76SAA1SAA1
Entrez,  Source
serum amyloid A197070.0290.3070No
77BCL2L1BCL2L1
Entrez,  Source
BCL2-like 1101300.0250.2884No
78ISG15ISG15
Entrez,  Source
ISG15 ubiquitin-like modifier102190.0240.2857No
79PIK3R4PIK3R4
Entrez,  Source
phosphoinositide-3-kinase, regulatory subunit 4, p150102980.0230.2834No
80PROS1PROS1
Entrez,  Source
protein S (alpha)103620.0220.2817No
81MEF2AMEF2A
Entrez,  Source
MADS box transcription enhancer factor 2, polypeptide A (myocyte enhancer factor 2A)103810.0220.2822No
82NLRC5104030.0220.2826No
83TLR4TLR4
Entrez,  Source
toll-like receptor 4104880.0210.2799No
84BIRC2BIRC2
Entrez,  Source
baculoviral IAP repeat-containing 2105050.0210.2804No
85NFKB2NFKB2
Entrez,  Source
nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100)105870.0200.2778No
86RPS6KA3RPS6KA3
Entrez,  Source
ribosomal protein S6 kinase, 90kDa, polypeptide 3106040.0200.2782No
87MAP3K1MAP3K1
Entrez,  Source
mitogen-activated protein kinase kinase kinase 1106620.0190.2767No
88TAB2107930.0180.2716No
89MAPK1MAPK1
Entrez,  Source
mitogen-activated protein kinase 1108020.0180.2724No
90UNC93B1UNC93B1
Entrez,  Source
unc-93 homolog B1 (C. elegans)108290.0180.2722No
91CASP8CASP8
Entrez,  Source
caspase 8, apoptosis-related cysteine peptidase109270.0170.2687No
92TAX1BP1TAX1BP1
Entrez,  Source
Tax1 (human T-cell leukemia virus type I) binding protein 1111140.0150.2607No
93DDOSTDDOST
Entrez,  Source
dolichyl-diphosphooligosaccharide-protein glycosyltransferase111330.0150.2608No
94MAPK12MAPK12
Entrez,  Source
mitogen-activated protein kinase 12111580.0150.2606No
95PLCG2PLCG2
Entrez,  Source
phospholipase C, gamma 2 (phosphatidylinositol-specific)111820.0150.2604No
96IRF1IRF1
Entrez,  Source
interferon regulatory factor 1112180.0140.2596No
97APPAPP
Entrez,  Source
amyloid beta (A4) precursor protein (peptidase nexin-II, Alzheimer disease)112770.0140.2577No
98PPP2R5DPPP2R5D
Entrez,  Source
protein phosphatase 2, regulatory subunit B (B56), delta isoform112870.0140.2581No
99MAPKAPK2MAPKAPK2
Entrez,  Source
mitogen-activated protein kinase-activated protein kinase 2113420.0130.2563No
100SIKE1114040.0130.2542No
101EP300EP300
Entrez,  Source
E1A binding protein p300114720.0120.2517No
102CAPZA1CAPZA1
Entrez,  Source
capping protein (actin filament) muscle Z-line, alpha 1115840.0110.2471No
103UBE2K115890.0110.2476No
104DEFB132119030.0080.2331No
105CASP10CASP10
Entrez,  Source
caspase 10, apoptosis-related cysteine peptidase119410.0070.2318No
106HSP90AB1HSP90AB1
Entrez,  Source
heat shock protein 90kDa alpha (cytosolic), class B member 1121580.0050.2218No
107RNF125RNF125
Entrez,  Source
ring finger protein 125123470.0040.2131No
108TICAM1TICAM1
Entrez,  Source
toll-like receptor adaptor molecule 1123810.0030.2117No
109EEA1EEA1
Entrez,  Source
early endosome antigen 1, 162kD123890.0030.2116No
110PELI3PELI3
Entrez,  Source
pellino homolog 3 (Drosophila)124210.0030.2103No
111CYLDCYLD
Entrez,  Source
cylindromatosis (turban tumor syndrome)124420.0030.2095No
112MAVS125290.0020.2056No
113TBK1TBK1
Entrez,  Source
TANK-binding kinase 1125780.0020.2034No
114CREBBPCREBBP
Entrez,  Source
CREB binding protein (Rubinstein-Taybi syndrome)125880.0020.2031No
115TANKTANK
Entrez,  Source
TRAF family member-associated NFKB activator125910.0020.2031No
116CASP1CASP1
Entrez,  Source
caspase 1, apoptosis-related cysteine peptidase (interleukin 1, beta, convertase)127050.0010.1977No
117PPP2CAPPP2CA
Entrez,  Source
protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform12927-0.0010.1872No
118IFIH1IFIH1
Entrez,  Source
interferon induced with helicase C domain 112971-0.0010.1853No
119DNM2DNM2
Entrez,  Source
dynamin 213109-0.0030.1789No
120PYCARDPYCARD
Entrez,  Source
PYD and CARD domain containing13204-0.0030.1746No
121PELI2PELI2
Entrez,  Source
pellino homolog 2 (Drosophila)13249-0.0040.1728No
122MAPK13MAPK13
Entrez,  Source
mitogen-activated protein kinase 1313340-0.0050.1687No
123TRAF6TRAF6
Entrez,  Source
TNF receptor-associated factor 613413-0.0050.1656No
124MAP2K2MAP2K2
Entrez,  Source
mitogen-activated protein kinase kinase 213418-0.0050.1658No
125CASP2CASP2
Entrez,  Source
caspase 2, apoptosis-related cysteine peptidase (neural precursor cell expressed, developmentally down-regulated 2)13482-0.0060.1631No
126CD46CD46
Entrez,  Source
CD46 molecule, complement regulatory protein13595-0.0070.1582No
127CHUKCHUK
Entrez,  Source
conserved helix-loop-helix ubiquitous kinase13754-0.0080.1512No
128NFKBIANFKBIA
Entrez,  Source
nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha13819-0.0090.1487No
129PIK3C3PIK3C3
Entrez,  Source
phosphoinositide-3-kinase, class 313944-0.0100.1434No
130MAPK9MAPK9
Entrez,  Source
mitogen-activated protein kinase 914359-0.0130.1244No
131UBE2D3UBE2D3
Entrez,  Source
ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast)14465-0.0140.1203No
132PRKCSHPRKCSH
Entrez,  Source
protein kinase C substrate 80K-H14526-0.0150.1183No
133RNF135RNF135
Entrez,  Source
ring finger protein 13514612-0.0150.1152No
134UBA714637-0.0160.1151No
135UBE2D2UBE2D2
Entrez,  Source
ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast)14677-0.0160.1142No
136IRF3IRF3
Entrez,  Source
interferon regulatory factor 314709-0.0160.1137No
137CREB1CREB1
Entrez,  Source
cAMP responsive element binding protein 114742-0.0170.1132No
138TRIM25TRIM25
Entrez,  Source
tripartite motif-containing 2514862-0.0180.1086No
139BCL2BCL2
Entrez,  Source
B-cell CLL/lymphoma 214895-0.0180.1082No
140MAPK14MAPK14
Entrez,  Source
mitogen-activated protein kinase 1415039-0.0190.1026No
141UBA52UBA52
Entrez,  Source
ubiquitin A-52 residue ribosomal protein fusion product 115098-0.0200.1010No
142DHX5815184-0.0200.0982No
143RIPK1RIPK1
Entrez,  Source
receptor (TNFRSF)-interacting serine-threonine kinase 115282-0.0210.0949No
144TAB115285-0.0210.0961No
145ATG5ATG5
Entrez,  Source
ATG5 autophagy related 5 homolog (S. cerevisiae)15288-0.0210.0973No
146IKBKBIKBKB
Entrez,  Source
inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase beta15314-0.0220.0975No
147MAP3K7MAP3K7
Entrez,  Source
mitogen-activated protein kinase kinase kinase 715371-0.0220.0962No
148IRF2IRF2
Entrez,  Source
interferon regulatory factor 215518-0.0230.0906No
149OTUD5OTUD5
Entrez,  Source
OTU domain containing 515529-0.0230.0916No
150ATF2ATF2
Entrez,  Source
activating transcription factor 215645-0.0240.0876No
151TAB315818-0.0260.0810No
152DUSP6DUSP6
Entrez,  Source
dual specificity phosphatase 615822-0.0260.0825No
153IRF7IRF7
Entrez,  Source
interferon regulatory factor 715840-0.0260.0833No
154MAPK8MAPK8
Entrez,  Source
mitogen-activated protein kinase 815844-0.0260.0848No
155MAP2K7MAP2K7
Entrez,  Source
mitogen-activated protein kinase kinase 715866-0.0260.0854No
156PPP2R1APPP2R1A
Entrez,  Source
protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), alpha isoform15949-0.0270.0832No
157RPS6KA2RPS6KA2
Entrez,  Source
ribosomal protein S6 kinase, 90kDa, polypeptide 216028-0.0280.0812No
158S100BS100B
Entrez,  Source
S100 calcium binding protein B16029-0.0280.0829No
159CAPZA2CAPZA2
Entrez,  Source
capping protein (actin filament) muscle Z-line, alpha 216112-0.0290.0808No
160UBE2NUBE2N
Entrez,  Source
ubiquitin-conjugating enzyme E2N (UBC13 homolog, yeast)16312-0.0310.0732No
161PCBP2PCBP2
Entrez,  Source
poly(rC) binding protein 216444-0.0320.0689No
162CASP4CASP4
Entrez,  Source
caspase 4, apoptosis-related cysteine peptidase16448-0.0320.0708No
163TRAF2TRAF2
Entrez,  Source
TNF receptor-associated factor 216465-0.0320.0720No
164RPS27ARPS27A
Entrez,  Source
ribosomal protein S27a16508-0.0320.0720No
165JUNJUN
Entrez,  Source
jun oncogene16551-0.0330.0720No
166PPP2CBPPP2CB
Entrez,  Source
protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform16622-0.0340.0708No
167MAPK7MAPK7
Entrez,  Source
mitogen-activated protein kinase 716652-0.0340.0715No
168RELARELA
Entrez,  Source
v-rel reticuloendotheliosis viral oncogene homolog A, nuclear factor of kappa light polypeptide gene enhancer in B-cells 3, p65 (avian)16661-0.0340.0732No
169MEF2CMEF2C
Entrez,  Source
MADS box transcription enhancer factor 2, polypeptide C (myocyte enhancer factor 2C)16718-0.0350.0727No
170UBE2L6UBE2L6
Entrez,  Source
ubiquitin-conjugating enzyme E2L 616857-0.0360.0683No
171HMGB1HMGB1
Entrez,  Source
high-mobility group box 117008-0.0380.0635No
172ATG12ATG12
Entrez,  Source
ATG12 autophagy related 12 homolog (S. cerevisiae)17057-0.0380.0636No
173DDX58DDX58
Entrez,  Source
DEAD (Asp-Glu-Ala-Asp) box polypeptide 5817183-0.0400.0601No
174FOSFOS
Entrez,  Source
v-fos FBJ murine osteosarcoma viral oncogene homolog17345-0.0420.0550No
175NFKBIBNFKBIB
Entrez,  Source
nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta17373-0.0420.0563No
176MAPKAPK3MAPKAPK3
Entrez,  Source
mitogen-activated protein kinase-activated protein kinase 317392-0.0420.0581No
177NLRP117480-0.0440.0566No
178IRAK4IRAK4
Entrez,  Source
interleukin-1 receptor-associated kinase 417589-0.0450.0542No
179ELK1ELK1
Entrez,  Source
ELK1, member of ETS oncogene family17714-0.0470.0512No
180ATF1ATF1
Entrez,  Source
activating transcription factor 117871-0.0490.0468No
181RPS6KA5RPS6KA5
Entrez,  Source
ribosomal protein S6 kinase, 90kDa, polypeptide 517876-0.0490.0497No
182MAP2K4MAP2K4
Entrez,  Source
mitogen-activated protein kinase kinase 418117-0.0530.0415No
183MAPK3MAPK3
Entrez,  Source
mitogen-activated protein kinase 318147-0.0530.0434No
184MAPK10MAPK10
Entrez,  Source
mitogen-activated protein kinase 1018210-0.0540.0438No
185ECSITECSIT
Entrez,  Source
ECSIT homolog (Drosophila)18346-0.0570.0408No
186CASP9CASP9
Entrez,  Source
caspase 9, apoptosis-related cysteine peptidase18355-0.0570.0440No
187LGALS3LGALS3
Entrez,  Source
lectin, galactoside-binding, soluble, 3 (galectin 3)18384-0.0570.0462No
188MAPK11MAPK11
Entrez,  Source
mitogen-activated protein kinase 1118392-0.0580.0494No
189PIN1PIN1
Entrez,  Source
protein (peptidylprolyl cis/trans isomerase) NIMA-interacting 118542-0.0600.0461No
190DUSP7DUSP7
Entrez,  Source
dual specificity phosphatase 718973-0.0700.0299No
191CFICFI
Entrez,  Source
complement factor I19102-0.0740.0283No
192C8GC8G
Entrez,  Source
complement component 8, gamma polypeptide19112-0.0740.0325No
193SIGIRRSIGIRR
Entrez,  Source
single immunoglobulin and toll-interleukin 1 receptor (TIR) domain19248-0.0780.0309No
194HERC5HERC5
Entrez,  Source
hect domain and RLD 519337-0.0810.0317No
195TXNIPTXNIP
Entrez,  Source
thioredoxin interacting protein19385-0.0830.0346No
196DUSP4DUSP4
Entrez,  Source
dual specificity phosphatase 419784-0.0970.0216No
197MAP2K6MAP2K6
Entrez,  Source
mitogen-activated protein kinase kinase 620166-0.1160.0105No
198IKBKGIKBKG
Entrez,  Source
inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase gamma20251-0.1200.0140No
199IRAK3IRAK3
Entrez,  Source
interleukin-1 receptor-associated kinase 320304-0.1240.0192No
200RIPK3RIPK3
Entrez,  Source
receptor-interacting serine-threonine kinase 320489-0.1370.0189No
201FADDFADD
Entrez,  Source
Fas (TNFRSF6)-associated via death domain20913-0.1990.0110No
Table: GSEA details [plain text format]



Fig 2: REACTOME_INNATE_IMMUNE_SYSTEM   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: REACTOME_INNATE_IMMUNE_SYSTEM: Random ES distribution   
Gene set null distribution of ES for REACTOME_INNATE_IMMUNE_SYSTEM