| Dataset | SMCHD1_KO_collapsed_to_symbols.SMCHD1_KO.cls #del_versus_fl.SMCHD1_KO.cls #del_versus_fl_repos |
| Phenotype | SMCHD1_KO.cls#del_versus_fl_repos |
| Upregulated in class | 0 |
| GeneSet | GO_DNA_DOUBLE_STRAND_BREAK_PROCESSING |
| Enrichment Score (ES) | 0.6479427 |
| Normalized Enrichment Score (NES) | 1.8115509 |
| Nominal p-value | 0.0053475937 |
| FDR q-value | 0.2359882 |
| FWER p-Value | 0.978 |

| PROBE | GENE SYMBOL | GENE_TITLE | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|---|---|
| 1 | SETMAR | SETMAR Entrez,  Source | SET domain and mariner transposase fusion gene | 28 | 1.113 | 0.5266 | Yes |
| 2 | RAD50 | RAD50 Entrez,  Source | RAD50 homolog (S. cerevisiae) | 2833 | 0.133 | 0.4812 | Yes |
| 3 | BARD1 | BARD1 Entrez,  Source | BRCA1 associated RING domain 1 | 3146 | 0.113 | 0.5229 | Yes |
| 4 | RAD52 | RAD52 Entrez,  Source | RAD52 homolog (S. cerevisiae) | 3324 | 0.104 | 0.5654 | Yes |
| 5 | BLM | BLM Entrez,  Source | Bloom syndrome | 3626 | 0.092 | 0.5973 | Yes |
| 6 | SMARCAD1 | SMARCAD1 Entrez,  Source | SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 | 4083 | 0.083 | 0.6189 | Yes |
| 7 | NBN | NBN Entrez,  Source | nibrin | 4268 | 0.076 | 0.6479 | Yes |
| 8 | RBBP8 | RBBP8 Entrez,  Source | retinoblastoma binding protein 8 | 8178 | 0.071 | 0.5304 | No |
| 9 | BRCA1 | BRCA1 Entrez,  Source | breast cancer 1, early onset | 8541 | 0.063 | 0.5463 | No |
| 10 | RNF138 | RNF138 Entrez,  Source | ring finger protein 138 | 9509 | 0.050 | 0.5328 | No |
| 11 | DNA2 | 10747 | 0.033 | 0.5009 | No | ||
| 12 | UBE2V2 | UBE2V2 Entrez,  Source | ubiquitin-conjugating enzyme E2 variant 2 | 10871 | 0.032 | 0.5112 | No |
| 13 | MRE11A | MRE11A Entrez,  Source | MRE11 meiotic recombination 11 homolog A (S. cerevisiae) | 11214 | 0.028 | 0.5113 | No |
| 14 | KAT5 | 11817 | 0.021 | 0.4980 | No | ||
| 15 | UBE2N | UBE2N Entrez,  Source | ubiquitin-conjugating enzyme E2N (UBC13 homolog, yeast) | 12187 | 0.016 | 0.4916 | No |
| 16 | EXD2 | 12616 | 0.011 | 0.4804 | No | ||
| 17 | SLX1B | 13841 | -0.003 | 0.4347 | No | ||
| 18 | SLX4 | 13997 | -0.005 | 0.4312 | No | ||
| 19 | ATM | ATM Entrez,  Source | ataxia telangiectasia mutated (includes complementation groups A, C and D) | 17577 | -0.060 | 0.3215 | No |

