## Beginning of track view
track             cantorPRchipseq
compositeTrack    on
shortLabel        Cantor PR ChIPseq
longLabel         Cantor PR ChIPseq
priority          1100
visibility        full
type              bed 3
configurable      on
subGroup1         view Views \
   COV=Coverage \
   PEAK=Peaks \
   JUNC=Junctions
subGroup2         Group1 IP \ 
    Input=Input \
    PR=PR
subGroup3         Group2 Treatment \ 
    Minus=Minus \
    Plus=Plus
dimensions        dimX=Group1 dimY=Group2
sortOrder         Group1=+ Group2=+  view=+
 
   ## Views track coverage data
   track             cantorPRchipseqView1
   parent            cantorPRchipseq
   shortLabel        Coverage
   view              COV
   visibility        full
   type              bigWig
   allButtonPair     on
   centerLabelsDense on
   dragAndDrop       on
   alwaysZero        on
   graphTypeDefault  bar
   maxHeightPixels   100:65:8
   smoothingWindow   2
   transformFunc     NONE
   windowingFunction mean+whiskers
   gridDefault       on
   viewLimits        0:50
   viewUi            on
 
      ## Coverage track
      track             MES730InputMinus_coverage
      parent            cantorPRchipseqView1 on
      bigDataUrl        MES730InputMinus_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-nodupes-150-bin10-normalizeTo1x-scale.bw
      shortLabel        Input_Minus MES730InputMinus coverage
      longLabel         Input_Minus MES730InputMinus coverage
      type              bigWig
      color             148,188,255
      priority          1102
      alwaysZero        on
      graphTypeDefault  bar
      maxHeightPixels   100:65:8
      smoothingWindow   2
      transformFunc     NONE
      windowingFunction mean+whiskers
      gridDefault       on
      viewLimits        0:50
      visibility        hide
      subGroups         Group1=Input Group2=Minus view=COV
 
      ## Coverage track
      track             MES730InputPlus_coverage
      parent            cantorPRchipseqView1 on
      bigDataUrl        MES730InputPlus_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-nodupes-150-bin10-normalizeTo1x-scale.bw
      shortLabel        Input_Plus MES730InputPlus coverage
      longLabel         Input_Plus MES730InputPlus coverage
      type              bigWig
      color             111,165,255
      priority          1104
      alwaysZero        on
      graphTypeDefault  bar
      maxHeightPixels   100:65:8
      smoothingWindow   2
      transformFunc     NONE
      windowingFunction mean+whiskers
      gridDefault       on
      viewLimits        0:50
      visibility        hide
      subGroups         Group1=Input Group2=Plus view=COV
 
      ## Coverage track
      track             MES730PRMinus_coverage
      parent            cantorPRchipseqView1 on
      bigDataUrl        MES730PRMinus_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-nodupes-150-bin10-normalizeTo1x-scale.bw
      shortLabel        PR_Minus MES730PRMinus coverage
      longLabel         PR_Minus MES730PRMinus coverage
      type              bigWig
      color             71,129,224
      priority          1106
      alwaysZero        on
      graphTypeDefault  bar
      maxHeightPixels   100:65:8
      smoothingWindow   2
      transformFunc     NONE
      windowingFunction mean+whiskers
      gridDefault       on
      viewLimits        0:50
      visibility        hide
      subGroups         Group1=PR Group2=Minus view=COV
 
      ## Coverage track
      track             MES730PRPlus_coverage
      parent            cantorPRchipseqView1 on
      bigDataUrl        MES730PRPlus_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-nodupes-150-bin10-normalizeTo1x-scale.bw
      shortLabel        PR_Plus MES730PRPlus coverage
      longLabel         PR_Plus MES730PRPlus coverage
      type              bigWig
      color             36,84,163
      priority          1108
      alwaysZero        on
      graphTypeDefault  bar
      maxHeightPixels   100:65:8
      smoothingWindow   2
      transformFunc     NONE
      windowingFunction mean+whiskers
      gridDefault       on
      viewLimits        0:50
      visibility        hide
      subGroups         Group1=PR Group2=Plus view=COV
 
   ## Views track for ChIPseq peaks
   track             cantorPRchipseqView3
   parent            cantorPRchipseq
   shortLabel        Peaks
   view              PEAK
   visibility        pack
   type              bigBed
   allButtonPair     on
   centerLabelsDense on
   dragAndDrop       on
   viewUi            on
 
      # Peak track
      track             PRPlus-Vs-InputPlus_peaks
      parent            cantorPRchipseqView3 on
      bigDataUrl        PRPlus-Vs-InputPlus_findPeaks_none.150.150_fdr0.05_p0.0001_foc0_loc300_fc4_min0.sorted.bb
      shortLabel        PRPlus-Vs-InputPlus peaks
      longLabel         PRPlus-Vs-InputPlus peaks
      type              bigBed
      visibility        pack
      priority          1110
      color             36,84,163
      subGroups         Group1=PR Group2=Plus view=PEAK