#!/bin/bash

source /ddn/gs1/home/wardjm/.bash_colors

cp trackDb_v3.txt trackDb.txt;
#perl -pi -e '@vals = ("V5","GR","me3","IgG");for $i (@vals) {$_ =~ s/CutNRun_NS51144_$i_set/CutNRun_NS51144_cov_set/;$_ =~ s/CutNRun_NS51144_$i$/CutNRun_NS51144_cov/;}' trackDb.txt; grep CutNRun_NS51144_ trackDb.txt

for i in V5 GR me3 igG; do
   echo -e "${FCYAN}${i}${RESET}";
   echo "perl -pi -e 's/CutNRun_NS51144_${i}\$/CutNRun_NS51144_cov/;' trackDb.txt"
   perl -pi -e "s/CutNRun_NS51144_${i}\$/CutNRun_NS51144_cov/;" trackDb.txt
#   perl -pi -e "s/CutNRun_NS51144_${i}_set/CutNRun_NS51144_cov_set/;" trackDb.txt
done;

grep CutNRun_NS51144_ trackDb.txt