#################################### ## track set ## NS50112_stranded_RNAseq track NS50728_stranded superTrack on show shortLabel NS50728_stranded_RNAseq longLabel NS50728_stranded_RNAseq priority 1000 # ################################## # # Overlay multiple stranded tracks track SW13_none_stranded superTrack NS50728_stranded full container multiWig aggregate transparentOverlay shortLabel SW13_none longLabel SW13_none showSubtrackColorOnUi on type bigWig priority 1002 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full # ################################## track SW13_none_A_pos-1 parent SW13_none_stranded bigDataUrl SW13_none_A-NS50728.STAR_hg19.pos.bw type bigWig color 247,165,170 priority 1002 # ################################## track SW13_none_A_pos-2 parent SW13_none_stranded bigDataUrl SW13_none_A-NS50729.STAR_hg19.pos.bw type bigWig color 247,165,170 priority 1002 # ################################## track SW13_none_A_neg-1 parent SW13_none_stranded bigDataUrl SW13_none_A-NS50728.STAR_hg19.neg.bw type bigWig color 247,165,170 priority 1002 # ################################## track SW13_none_A_neg-2 parent SW13_none_stranded bigDataUrl SW13_none_A-NS50729.STAR_hg19.neg.bw type bigWig color 247,165,170 priority 1002 # ################################## track SW13_none_B_pos-1 parent SW13_none_stranded bigDataUrl SW13_none_B-NS50728.STAR_hg19.pos.bw type bigWig color 247,165,170 priority 1002 # ################################## track SW13_none_B_pos-2 parent SW13_none_stranded bigDataUrl SW13_none_B-NS50729.STAR_hg19.pos.bw type bigWig color 247,165,170 priority 1002 # ################################## track SW13_none_B_neg-1 parent SW13_none_stranded bigDataUrl SW13_none_B-NS50728.STAR_hg19.neg.bw type bigWig color 247,165,170 priority 1002 # ################################## track SW13_none_B_neg-2 parent SW13_none_stranded bigDataUrl SW13_none_B-NS50729.STAR_hg19.neg.bw type bigWig color 247,165,170 priority 1002 # ################################## track SW13_none_C_pos-1 parent SW13_none_stranded bigDataUrl SW13_none_C-NS50728.STAR_hg19.pos.bw type bigWig color 247,165,170 priority 1002 # ################################## track SW13_none_C_pos-2 parent SW13_none_stranded bigDataUrl SW13_none_C-NS50729.STAR_hg19.pos.bw type bigWig color 247,165,170 priority 1002 # ################################## track SW13_none_C_neg-1 parent SW13_none_stranded bigDataUrl SW13_none_C-NS50728.STAR_hg19.neg.bw type bigWig color 247,165,170 priority 1002 # ################################## track SW13_none_C_neg-2 parent SW13_none_stranded bigDataUrl SW13_none_C-NS50729.STAR_hg19.neg.bw type bigWig color 247,165,170 priority 1002 # ################################## # # Overlay multiple stranded tracks track SW13_tet_stranded superTrack NS50728_stranded full container multiWig aggregate transparentOverlay shortLabel SW13_tet longLabel SW13_tet showSubtrackColorOnUi on type bigWig priority 1007 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full # ################################## track SW13_tet_A_pos-1 parent SW13_tet_stranded bigDataUrl SW13_tet_A-NS50728.STAR_hg19.pos.bw type bigWig color 235,155,160 priority 1007 # ################################## track SW13_tet_A_pos-2 parent SW13_tet_stranded bigDataUrl SW13_tet_A-NS50729.STAR_hg19.pos.bw type bigWig color 235,155,160 priority 1007 # ################################## track SW13_tet_A_neg-1 parent SW13_tet_stranded bigDataUrl SW13_tet_A-NS50728.STAR_hg19.neg.bw type bigWig color 235,155,160 priority 1007 # ################################## track SW13_tet_A_neg-2 parent SW13_tet_stranded bigDataUrl SW13_tet_A-NS50729.STAR_hg19.neg.bw type bigWig color 235,155,160 priority 1007 # ################################## track SW13_tet_B_pos-1 parent SW13_tet_stranded bigDataUrl SW13_tet_B-NS50728.STAR_hg19.pos.bw type bigWig color 235,155,160 priority 1007 # ################################## track SW13_tet_B_pos-2 parent SW13_tet_stranded bigDataUrl SW13_tet_B-NS50729.STAR_hg19.pos.bw type bigWig color 235,155,160 priority 1007 # ################################## track SW13_tet_B_neg-1 parent SW13_tet_stranded bigDataUrl SW13_tet_B-NS50728.STAR_hg19.neg.bw type bigWig color 235,155,160 priority 1007 # ################################## track SW13_tet_B_neg-2 parent SW13_tet_stranded bigDataUrl SW13_tet_B-NS50729.STAR_hg19.neg.bw type bigWig color 235,155,160 priority 1007 # ################################## track SW13_tet_C_pos-1 parent SW13_tet_stranded bigDataUrl SW13_tet_C-NS50728.STAR_hg19.pos.bw type bigWig color 235,155,160 priority 1007 # ################################## track SW13_tet_C_pos-2 parent SW13_tet_stranded bigDataUrl SW13_tet_C-NS50729.STAR_hg19.pos.bw type bigWig color 235,155,160 priority 1007 # ################################## track SW13_tet_C_neg-1 parent SW13_tet_stranded bigDataUrl SW13_tet_C-NS50728.STAR_hg19.neg.bw type bigWig color 235,155,160 priority 1007 # ################################## track SW13_tet_C_neg-2 parent SW13_tet_stranded bigDataUrl SW13_tet_C-NS50729.STAR_hg19.neg.bw type bigWig color 235,155,160 priority 1007 # ################################## # # Overlay multiple stranded tracks track iBRG1_none_stranded superTrack NS50728_stranded full container multiWig aggregate transparentOverlay shortLabel iBRG1_none longLabel iBRG1_none showSubtrackColorOnUi on type bigWig priority 1012 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full # ################################## track iBRG1_none_A_pos-1 parent iBRG1_none_stranded bigDataUrl iBRG1_none_A-NS50728.STAR_hg19.pos.bw type bigWig color 255,238,187 priority 1012 # ################################## track iBRG1_none_A_pos-2 parent iBRG1_none_stranded bigDataUrl iBRG1_none_A-NS50729.STAR_hg19.pos.bw type bigWig color 255,238,187 priority 1012 # ################################## track iBRG1_none_A_neg-1 parent iBRG1_none_stranded bigDataUrl iBRG1_none_A-NS50728.STAR_hg19.neg.bw type bigWig color 255,238,187 priority 1012 # ################################## track iBRG1_none_A_neg-2 parent iBRG1_none_stranded bigDataUrl iBRG1_none_A-NS50729.STAR_hg19.neg.bw type bigWig color 255,238,187 priority 1012 # ################################## track iBRG1_none_B_pos-1 parent iBRG1_none_stranded bigDataUrl iBRG1_none_B-NS50728.STAR_hg19.pos.bw type bigWig color 255,238,187 priority 1012 # ################################## track iBRG1_none_B_pos-2 parent iBRG1_none_stranded bigDataUrl iBRG1_none_B-NS50729.STAR_hg19.pos.bw type bigWig color 255,238,187 priority 1012 # ################################## track iBRG1_none_B_neg-1 parent iBRG1_none_stranded bigDataUrl iBRG1_none_B-NS50728.STAR_hg19.neg.bw type bigWig color 255,238,187 priority 1012 # ################################## track iBRG1_none_B_neg-2 parent iBRG1_none_stranded bigDataUrl iBRG1_none_B-NS50729.STAR_hg19.neg.bw type bigWig color 255,238,187 priority 1012 # ################################## track iBRG1_none_C_pos-1 parent iBRG1_none_stranded bigDataUrl iBRG1_none_C-NS50728.STAR_hg19.pos.bw type bigWig color 255,238,187 priority 1012 # ################################## track iBRG1_none_C_pos-2 parent iBRG1_none_stranded bigDataUrl iBRG1_none_C-NS50729.STAR_hg19.pos.bw type bigWig color 255,238,187 priority 1012 # ################################## track iBRG1_none_C_neg-1 parent iBRG1_none_stranded bigDataUrl iBRG1_none_C-NS50728.STAR_hg19.neg.bw type bigWig color 255,238,187 priority 1012 # ################################## track iBRG1_none_C_neg-2 parent iBRG1_none_stranded bigDataUrl iBRG1_none_C-NS50729.STAR_hg19.neg.bw type bigWig color 255,238,187 priority 1012 # ################################## # # Overlay multiple stranded tracks track iBRG1_tet_stranded superTrack NS50728_stranded full container multiWig aggregate transparentOverlay shortLabel iBRG1_tet longLabel iBRG1_tet showSubtrackColorOnUi on type bigWig priority 1017 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full # ################################## track iBRG1_tet_A_pos-1 parent iBRG1_tet_stranded bigDataUrl iBRG1_tet_A-NS50728.STAR_hg19.pos.bw type bigWig color 255,226,177 priority 1017 # ################################## track iBRG1_tet_A_pos-2 parent iBRG1_tet_stranded bigDataUrl iBRG1_tet_A-NS50729.STAR_hg19.pos.bw type bigWig color 255,226,177 priority 1017 # ################################## track iBRG1_tet_A_neg-1 parent iBRG1_tet_stranded bigDataUrl iBRG1_tet_A-NS50728.STAR_hg19.neg.bw type bigWig color 255,226,177 priority 1017 # ################################## track iBRG1_tet_A_neg-2 parent iBRG1_tet_stranded bigDataUrl iBRG1_tet_A-NS50729.STAR_hg19.neg.bw type bigWig color 255,226,177 priority 1017 # ################################## track iBRG1_tet_B_pos-1 parent iBRG1_tet_stranded bigDataUrl iBRG1_tet_B-NS50728.STAR_hg19.pos.bw type bigWig color 255,226,177 priority 1017 # ################################## track iBRG1_tet_B_pos-2 parent iBRG1_tet_stranded bigDataUrl iBRG1_tet_B-NS50729.STAR_hg19.pos.bw type bigWig color 255,226,177 priority 1017 # ################################## track iBRG1_tet_B_neg-1 parent iBRG1_tet_stranded bigDataUrl iBRG1_tet_B-NS50728.STAR_hg19.neg.bw type bigWig color 255,226,177 priority 1017 # ################################## track iBRG1_tet_B_neg-2 parent iBRG1_tet_stranded bigDataUrl iBRG1_tet_B-NS50729.STAR_hg19.neg.bw type bigWig color 255,226,177 priority 1017 # ################################## track iBRG1_tet_C_pos-1 parent iBRG1_tet_stranded bigDataUrl iBRG1_tet_C-NS50728.STAR_hg19.pos.bw type bigWig color 255,226,177 priority 1017 # ################################## track iBRG1_tet_C_pos-2 parent iBRG1_tet_stranded bigDataUrl iBRG1_tet_C-NS50729.STAR_hg19.pos.bw type bigWig color 255,226,177 priority 1017 # ################################## track iBRG1_tet_C_neg-1 parent iBRG1_tet_stranded bigDataUrl iBRG1_tet_C-NS50728.STAR_hg19.neg.bw type bigWig color 255,226,177 priority 1017 # ################################## track iBRG1_tet_C_neg-2 parent iBRG1_tet_stranded bigDataUrl iBRG1_tet_C-NS50729.STAR_hg19.neg.bw type bigWig color 255,226,177 priority 1017 # ################################## # # Overlay multiple stranded tracks track iHSA_none_stranded superTrack NS50728_stranded full container multiWig aggregate transparentOverlay shortLabel iHSA_none longLabel iHSA_none showSubtrackColorOnUi on type bigWig priority 1022 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full # ################################## track iHSA_none_A_pos-1 parent iHSA_none_stranded bigDataUrl iHSA_none_A-NS50728.STAR_hg19.pos.bw type bigWig color 167,198,255 priority 1022 # ################################## track iHSA_none_A_pos-2 parent iHSA_none_stranded bigDataUrl iHSA_none_A-NS50729.STAR_hg19.pos.bw type bigWig color 167,198,255 priority 1022 # ################################## track iHSA_none_A_neg-1 parent iHSA_none_stranded bigDataUrl iHSA_none_A-NS50728.STAR_hg19.neg.bw type bigWig color 167,198,255 priority 1022 # ################################## track iHSA_none_A_neg-2 parent iHSA_none_stranded bigDataUrl iHSA_none_A-NS50729.STAR_hg19.neg.bw type bigWig color 167,198,255 priority 1022 # ################################## track iHSA_none_B_pos-1 parent iHSA_none_stranded bigDataUrl iHSA_none_B-NS50728.STAR_hg19.pos.bw type bigWig color 167,198,255 priority 1022 # ################################## track iHSA_none_B_pos-2 parent iHSA_none_stranded bigDataUrl iHSA_none_B-NS50729.STAR_hg19.pos.bw type bigWig color 167,198,255 priority 1022 # ################################## track iHSA_none_B_neg-1 parent iHSA_none_stranded bigDataUrl iHSA_none_B-NS50728.STAR_hg19.neg.bw type bigWig color 167,198,255 priority 1022 # ################################## track iHSA_none_B_neg-2 parent iHSA_none_stranded bigDataUrl iHSA_none_B-NS50729.STAR_hg19.neg.bw type bigWig color 167,198,255 priority 1022 # ################################## track iHSA_none_C_pos-1 parent iHSA_none_stranded bigDataUrl iHSA_none_C-NS50728.STAR_hg19.pos.bw type bigWig color 167,198,255 priority 1022 # ################################## track iHSA_none_C_pos-2 parent iHSA_none_stranded bigDataUrl iHSA_none_C-NS50729.STAR_hg19.pos.bw type bigWig color 167,198,255 priority 1022 # ################################## track iHSA_none_C_neg-1 parent iHSA_none_stranded bigDataUrl iHSA_none_C-NS50728.STAR_hg19.neg.bw type bigWig color 167,198,255 priority 1022 # ################################## track iHSA_none_C_neg-2 parent iHSA_none_stranded bigDataUrl iHSA_none_C-NS50729.STAR_hg19.neg.bw type bigWig color 167,198,255 priority 1022 # ################################## # # Overlay multiple stranded tracks track iHSA_tet_stranded superTrack NS50728_stranded full container multiWig aggregate transparentOverlay shortLabel iHSA_tet longLabel iHSA_tet showSubtrackColorOnUi on type bigWig priority 1027 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full # ################################## track iHSA_tet_A_pos-1 parent iHSA_tet_stranded bigDataUrl iHSA_tet_A-NS50728.STAR_hg19.pos.bw type bigWig color 152,182,243 priority 1027 # ################################## track iHSA_tet_A_pos-2 parent iHSA_tet_stranded bigDataUrl iHSA_tet_A-NS50729.STAR_hg19.pos.bw type bigWig color 152,182,243 priority 1027 # ################################## track iHSA_tet_A_neg-1 parent iHSA_tet_stranded bigDataUrl iHSA_tet_A-NS50728.STAR_hg19.neg.bw type bigWig color 152,182,243 priority 1027 # ################################## track iHSA_tet_A_neg-2 parent iHSA_tet_stranded bigDataUrl iHSA_tet_A-NS50729.STAR_hg19.neg.bw type bigWig color 152,182,243 priority 1027 # ################################## track iHSA_tet_B_pos-1 parent iHSA_tet_stranded bigDataUrl iHSA_tet_B-NS50728.STAR_hg19.pos.bw type bigWig color 152,182,243 priority 1027 # ################################## track iHSA_tet_B_pos-2 parent iHSA_tet_stranded bigDataUrl iHSA_tet_B-NS50729.STAR_hg19.pos.bw type bigWig color 152,182,243 priority 1027 # ################################## track iHSA_tet_B_neg-1 parent iHSA_tet_stranded bigDataUrl iHSA_tet_B-NS50728.STAR_hg19.neg.bw type bigWig color 152,182,243 priority 1027 # ################################## track iHSA_tet_B_neg-2 parent iHSA_tet_stranded bigDataUrl iHSA_tet_B-NS50729.STAR_hg19.neg.bw type bigWig color 152,182,243 priority 1027 # ################################## track iHSA_tet_C_pos-1 parent iHSA_tet_stranded bigDataUrl iHSA_tet_C-NS50728.STAR_hg19.pos.bw type bigWig color 152,182,243 priority 1027 # ################################## track iHSA_tet_C_pos-2 parent iHSA_tet_stranded bigDataUrl iHSA_tet_C-NS50729.STAR_hg19.pos.bw type bigWig color 152,182,243 priority 1027 # ################################## track iHSA_tet_C_neg-1 parent iHSA_tet_stranded bigDataUrl iHSA_tet_C-NS50728.STAR_hg19.neg.bw type bigWig color 152,182,243 priority 1027 # ################################## track iHSA_tet_C_neg-2 parent iHSA_tet_stranded bigDataUrl iHSA_tet_C-NS50729.STAR_hg19.neg.bw type bigWig color 152,182,243 priority 1027 ## Beginning of track view track Dietrich_Junctions compositeTrack on shortLabel Dietrich Junctions longLabel Dietrich Junctions priority 2004 visibility full type bed 3 configurable on subGroup1 view Views \ JUNC=Junctions subGroup2 Group1 Genotype \ SW13=SW13 \ iBRG1=iBRG1 \ iHSA=iHSA subGroup3 Group2 Treatment \ none=none \ tet=tet dimensions dimX=Group1 dimY=Group2 sortOrder Group1=+ Group2=+ view=+ ## Views track for RNAseq, junctions data track DietrichJunctionsView parent Dietrich_Junctions shortLabel RNAseq junction reads view JUNC visibility pack type bigBed 12 allButtonPair on centerLabelsDense on dragAndDrop on thickDrawItem on scoreFilter 5 scoreFilterLimits 1:1000 viewUi on # junctions track track SW13_none_junctions parent DietrichJunctionsView on bigDataUrl SW13_none_unionJunctions.STAR_hg19.bb shortLabel SW13_none junctions longLabel SW13_none junctions type bigBed 12 visibility pack priority 1004 scoreMin 5 scoreMax 100 color 191,45,55 subGroups Group1=SW13 Group2=none view=JUNC # junctions track track SW13_tet_junctions parent DietrichJunctionsView on bigDataUrl SW13_tet_unionJunctions.STAR_hg19.bb shortLabel SW13_tet junctions longLabel SW13_tet junctions type bigBed 12 visibility pack priority 1009 scoreMin 5 scoreMax 100 color 136,21,29 subGroups Group1=SW13 Group2=tet view=JUNC # junctions track track iBRG1_none_junctions parent DietrichJunctionsView on bigDataUrl iBRG1_none_unionJunctions.STAR_hg19.bb shortLabel iBRG1_none junctions longLabel iBRG1_none junctions type bigBed 12 visibility pack priority 1014 scoreMin 5 scoreMax 100 color 255,128,28 subGroups Group1=iBRG1 Group2=none view=JUNC # junctions track track iBRG1_tet_junctions parent DietrichJunctionsView on bigDataUrl iBRG1_tet_unionJunctions.STAR_hg19.bb shortLabel iBRG1_tet junctions longLabel iBRG1_tet junctions type bigBed 12 visibility pack priority 1019 scoreMin 5 scoreMax 100 color 179,86,13 subGroups Group1=iBRG1 Group2=tet view=JUNC # junctions track track iHSA_none_junctions parent DietrichJunctionsView on bigDataUrl iHSA_none_unionJunctions.STAR_hg19.bb shortLabel iHSA_none junctions longLabel iHSA_none junctions type bigBed 12 visibility pack priority 1024 scoreMin 5 scoreMax 100 color 33,90,206 subGroups Group1=iHSA Group2=none view=JUNC # junctions track track iHSA_tet_junctions parent DietrichJunctionsView on bigDataUrl iHSA_tet_unionJunctions.STAR_hg19.bb shortLabel iHSA_tet junctions longLabel iHSA_tet junctions type bigBed 12 visibility pack priority 1029 scoreMin 5 scoreMax 100 color 16,58,146 subGroups Group1=iHSA Group2=tet view=JUNC