## RNA-seq data coverage track set track hoffmanRnaseqSiBrg1Set compositeTrack on shortLabel Hoffman siBrg1 RNA-seq coverage, TopHat2 longLabel Hoffman siBrg1 RNA-seq coverage, TopHat2 type bigWig allButtonPair on centerLabelsDense on dragAndDrop on priority 833 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## RNA-seq data coverage tracks ## siBrg1 replicate 1 track siBrg1_r1 parent hoffmanRnaseqSiBrg1Set on bigDataUrl ES638_merged.topHat2pe.bw shortLabel RNA-seq siBrg1_r1 longLabel RNA-seq siBrg1_r1 type bigWig color 176,32,36 priority 834 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## siBrg1 replicate 2 track siBrg1_r2 parent hoffmanRnaseqSiBrg1Set on bigDataUrl ES639_merged.topHat2pe.bw shortLabel RNA-seq siBrg1_r2 longLabel RNA-seq siBrg1_r2 type bigWig color 176,32,36 priority 836 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## siBrg1 replicate 3 track siBrg1_r3 parent hoffmanRnaseqSiBrg1Set on bigDataUrl ES640_merged.topHat2pe.bw shortLabel RNA-seq siBrg1_r3 longLabel RNA-seq siBrg1_r3 type bigWig color 176,32,36 priority 838 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## Control replicate 1 track Control_r1 parent hoffmanRnaseqSiBrg1Set on bigDataUrl ES641_merged.topHat2pe.bw shortLabel RNA-seq Control_r1 longLabel RNA-seq Control_r1 type bigWig color 110,110,140 priority 840 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## Control replicate 2 track Control_r2 parent hoffmanRnaseqSiBrg1Set on bigDataUrl ES642_merged.topHat2pe.bw shortLabel RNA-seq Control_r2 longLabel RNA-seq Control_r2 type bigWig color 110,110,140 priority 842 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## Control replicate 3 track Control_r3 parent hoffmanRnaseqSiBrg1Set on bigDataUrl ES643_merged.topHat2pe.bw shortLabel RNA-seq Control_r3 longLabel RNA-seq Control_r3 type bigWig color 110,110,140 priority 844 alwaysZero on graphTypeDefault bar maxHeightPixels 100:24:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## ## # MES230_1.sanger.sickle.bowtieSe_hg19.sorted.bw ## ChIP-seq data coverage track set for MiSeq runs track hoffmanMiseqSet compositeTrack on shortLabel Hoffman Input ChIP-seq coverage longLabel Hoffman Input ChIP-seq coverage type bigWig allButtonPair on centerLabelsDense on dragAndDrop on priority 933 alwaysZero on graphTypeDefault bar maxHeightPixels 100:36:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## RNA-seq data coverage tracks ## Input lane track Input_MiSeq parent hoffmanMiseqSet on bigDataUrl MES230_1.sanger.sickle.bowtieSe_hg19.sorted.bw shortLabel ChIP-seq Input longLabel ChIP-seq Input type bigWig color 110,110,140 priority 934 alwaysZero on graphTypeDefault bar maxHeightPixels 100:36:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## Brg1 ChIP lane track Brg1_MiSeq parent hoffmanMiseqSet on bigDataUrl MES231_1.sanger.sickle.bowtieSe_hg19.sorted.bw shortLabel Brg1 ChIP-seq longLabel Brg1 ChIP-seq type bigWig color 176,32,36 priority 936 alwaysZero on graphTypeDefault bar maxHeightPixels 100:36:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## PolII ChIP lane track PolII_MiSeq parent hoffmanMiseqSet on bigDataUrl MES232_1.sanger.sickle.bowtieSe_hg19.sorted.bw shortLabel PolII ChIP-seq longLabel PolII ChIP-seq type bigWig color 32,36,176 priority 937 alwaysZero on graphTypeDefault bar maxHeightPixels 100:36:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## TopHat2 junctions, merged across lanes per sample track TopHat2Junc compositeTrack on shortLabel TopHat2 merged junctions longLabel TopHat2 merged junctions type bigBed allButtonPair on centerLabelsDense on dragAndDrop on priority 580 # siBrg1_r1 junctions track siBrg1_r1_junc parent TopHat2Junc bigDataUrl ES638_merged.junctions.bb shortLabel TopHat2 junctions siBrg1_r1 longLabel TopHat2 junctions siBrg1_r1 type bigBed color 176,32,36 visibility dense priority 581 # siBrg1_r2 junctions track siBrg1_r2_junc parent TopHat2Junc bigDataUrl ES639_merged.junctions.bb shortLabel TopHat2 junctions siBrg1_r2 longLabel TopHat2 junctions siBrg1_r2 type bigBed color 176,32,36 visibility dense priority 582 # siBrg1_r3 junctions track siBrg1_r3_junc parent TopHat2Junc bigDataUrl ES640_merged.junctions.bb shortLabel TopHat2 junctions siBrg1_r3 longLabel TopHat2 junctions siBrg1_r3 type bigBed color 176,32,36 visibility dense priority 583 # Control_r1 junctions track Control_r1_junc parent TopHat2Junc bigDataUrl ES641_merged.junctions.bb shortLabel TopHat2 junctions Control_r1 longLabel TopHat2 junctions Control_r1 type bigBed color 110,110,140 visibility dense priority 584 # Control_r2 junctions track Control_r2_junc parent TopHat2Junc bigDataUrl ES642_merged.junctions.bb shortLabel TopHat2 junctions Control_r2 longLabel TopHat2 junctions Control_r2 type bigBed color 110,110,140 visibility dense priority 585 # Control_r3 junctions track Control_r3_junc parent TopHat2Junc bigDataUrl ES643_merged.junctions.bb shortLabel TopHat2 junctions Control_r3 longLabel TopHat2 junctions Control_r3 type bigBed color 110,110,140 visibility dense priority 586