## TopHat2 junctions, merged across lanes per sample
track             homerMiseqPeaks
compositeTrack    on
shortLabel        HOMER MiSeq Peaks
longLabel         HOMER MiSeq Peaks
type              bigBed
allButtonPair     on
centerLabelsDense on
dragAndDrop       on
priority          680
visibility        dense

# RNA PolII ChIP-seq on MiSeq vs Input control
track             pol2chip_1k150fc4e3
parent            homerMiseqPeaks
bigDataUrl        homerComparison_PolIIChIP_Vs_InputControl.findPeaks_histoneregion.150.1000_fdr0.001_foc0.9_loc2000_fc4_min0.sorted.bb
shortLabel        PolII vs Input
longLabel         PolII vs Input 1k150fc4e3
type              bigBed
color             37,113,53
visibility        dense
priority          681

# Brg1 ChIP-seq peaks from Miseq
track             Brg1chip_1k150fc4e3
parent            homerMiseqPeaks
bigDataUrl        homerComparison_Brg1ChIP_Vs_InputControl.findPeaks_histoneregion.150.1000_fdr0.001_foc0.9_loc2000_fc4_min0.sorted.bb
shortLabel        Brg1 vs Input P.001
longLabel         Brg1 vs Input 1k150fc4e3
type              bigBed
color             255,112,0
visibility        dense
priority          582

# Brg1 ChIP-seq peaks from Miseq - fc2, P-value 0.003
track             Brg1chip_1k150fc2e3
parent            homerMiseqPeaks
bigDataUrl        homerComparison_Brg1ChIP_Vs_InputControl.findPeaks_histoneregion.150.1000_fdr0.003_p0.003_foc0.9_loc2000_fc2_min0.sorted.bb
shortLabel        Brg1 vs Input P.003
longLabel         Brg1 vs Input 1k150fc2e3
type              bigBed
color             255,112,0
visibility        dense
priority          583