## TopHat2 junctions, merged across lanes per sample
track             homerMiseqPeaks_jan2014
compositeTrack    on
shortLabel        HOMER MiSeq Peaks (merged)
longLabel         HOMER MiSeq Peaks (merged)
type              bigBed
allButtonPair     on
centerLabelsDense on
dragAndDrop       on
priority          690
visibility        dense

# RNA PolII ChIP-seq on MiSeq vs Input control
track             pol2chip_jan2014_min10
parent            homerMiseqPeaks_jan2014
bigDataUrl        homerComparison_PolIIChIP_Vs_InputControl.findPeaks_none-region.300.900_fdr0.001_p0.0001_foc0_loc2000_fc4_min10.sorted.bb
shortLabel        PolII vs Input (merged min10)
longLabel         PolII vs Input (merged min10)
type              bigBed
color             37,113,53
visibility        dense
priority          691

track             pol2chip_jan2014_min5
parent            homerMiseqPeaks_jan2014
bigDataUrl        homerComparison_PolIIChIP_Vs_InputControl.findPeaks_none-region.300.900_fdr0.001_p0.0001_foc0_loc2000_fc4_min5.sorted.bb
shortLabel        PolII vs Input (merged min5)
longLabel         PolII vs Input (merged min5)
type              bigBed
color             37,113,53
visibility        dense
priority          692

# Brg1 ChIP-seq peaks from Miseq
track             Brg1chip_jan2014_min10
parent            homerMiseqPeaks_jan2014
bigDataUrl        homerComparison_Brg1ChIP_Vs_InputControl.findPeaks_none-region.300.900_fdr0.001_p0.0001_foc0_loc2000_fc4_min10.sorted.bb
shortLabel        Brg1 vs Input (merged min10)
longLabel         Brg1 vs Input (merged min10)
type              bigBed
color             255,112,0
visibility        dense
priority          695

track             Brg1chip_jan2014_min5
parent            homerMiseqPeaks_jan2014
bigDataUrl        homerComparison_Brg1ChIP_Vs_InputControl.findPeaks_none-region.300.900_fdr0.001_p0.0001_foc0_loc2000_fc4_min5.sorted.bb
shortLabel        Brg1 vs Input (merged min5)
longLabel         Brg1 vs Input (merged min5)
type              bigBed
color             255,112,0
visibility        dense
priority          696