## Beginning of track view
track             hoffmanH3K27ac
compositeTrack    on
shortLabel        Hoffman H3K27ac ChIPseq
longLabel         Hoffman H3K27ac ChIPseq
priority          1400
visibility        full
type              bed 3
configurable      on
subGroup1         view Views \
   COV=Coverage \
   PEAK=Peaks
subGroup2         Group1 Group1 \ 
    H3K27ac=H3K27ac \
    input=input
subGroup3         Group2 Group2 \ 
    HSA=HSA \
    SW13=SW13
dimensions        dimX=Group1 dimY=Group2
sortOrder         Group2=+ Group1=+  view=-
 
   ## Views track coverage data
   track             hoffmanH3K27acView1
   parent            hoffmanH3K27ac
   shortLabel        Coverage
   view              COV
   visibility        full
   type              bigWig
   allButtonPair     on
   centerLabelsDense on
   dragAndDrop       on
   alwaysZero        on
   graphTypeDefault  bar
   maxHeightPixels   100:40:8
   smoothingWindow   2
   transformFunc     NONE
   windowingFunction mean+whiskers
   gridDefault       on
   viewLimits        0:20
   viewUi            on
 
      ## Coverage track
      track             HSAH3K27ac_coverage
      parent            hoffmanH3K27acView1 on
      bigDataUrl        HSAH3K27ac_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-nodupes-150-bin10-normalizeTo1x-scale.bw
      shortLabel        HSAH3K27ac coverage
      longLabel         HSAH3K27ac coverage
      type              bigWig
      color             76,15,133
      priority          1402
      alwaysZero        on
      graphTypeDefault  bar
      maxHeightPixels   100:40:8
      smoothingWindow   2
      transformFunc     NONE
      windowingFunction mean+whiskers
      gridDefault       on
      viewLimits        0:20
      visibility        hide
      subGroups         Group1=H3K27ac Group2=HSA view=COV
 
      ## Coverage track
      track             HSAinput_coverage
      parent            hoffmanH3K27acView1 on
      bigDataUrl        HSAinput_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-nodupes-150-bin10-normalizeTo1x-scale.bw
      shortLabel        HSAinput coverage
      longLabel         HSAinput coverage
      type              bigWig
      color             131,110,150
      priority          1404
      alwaysZero        on
      graphTypeDefault  bar
      maxHeightPixels   100:40:8
      smoothingWindow   2
      transformFunc     NONE
      windowingFunction mean+whiskers
      gridDefault       on
      viewLimits        0:20
      visibility        hide
      subGroups         Group1=input Group2=HSA view=COV
 
      ## Coverage track
      track             SW13H3K27ac_coverage
      parent            hoffmanH3K27acView1 on
      bigDataUrl        SW13H3K27ac_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-nodupes-150-bin10-normalizeTo1x-scale.bw
      shortLabel        SW13H3K27ac coverage
      longLabel         SW13H3K27ac coverage
      type              bigWig
      color             0,100,133
      priority          1406
      alwaysZero        on
      graphTypeDefault  bar
      maxHeightPixels   100:40:8
      smoothingWindow   2
      transformFunc     NONE
      windowingFunction mean+whiskers
      gridDefault       on
      viewLimits        0:20
      visibility        hide
      subGroups         Group1=H3K27ac Group2=SW13 view=COV
 
      ## Coverage track
      track             SW13input_coverage
      parent            hoffmanH3K27acView1 on
      bigDataUrl        SW13input_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-nodupes-150-bin10-normalizeTo1x-scale.bw
      shortLabel        SW13input coverage
      longLabel         SW13input coverage
      type              bigWig
      color             102,138,150
      priority          1408
      alwaysZero        on
      graphTypeDefault  bar
      maxHeightPixels   100:40:8
      smoothingWindow   2
      transformFunc     NONE
      windowingFunction mean+whiskers
      gridDefault       on
      viewLimits        0:20
      visibility        hide
      subGroups         Group1=input Group2=SW13 view=COV
 
   ## Views track for ChIPseq peaks
   track             hoffmanH3K27acView3
   parent            hoffmanH3K27ac
   shortLabel        Peaks
   view              PEAK
   visibility        pack
   type              bigBed
   allButtonPair     on
   centerLabelsDense on
   dragAndDrop       on
   viewUi            on
 
      # Peak track
      track             HSAH3K27ac_peaks
      parent            hoffmanH3K27acView3 on
      bigDataUrl        HSAH3K27ac_Vs_HSAinput.findPeaks_none-region.1000.2500_fdr0.001_p0.0001_foc0.9_loc2000_fc4_min0.sorted.bb
      shortLabel        HSAH3K27ac peaks
      longLabel         HSAH3K27ac peaks
      type              bigBed
      visibility        pack
      priority          1410
      color             76,15,133
      subGroups         Group1=H3K27ac Group2=HSA view=PEAK
 
      # Peak track
      track             SW13H3K27ac_peaks
      parent            hoffmanH3K27acView3 on
      bigDataUrl        SW13H3K27ac_Vs_SW13input.findPeaks_none-region.1000.2500_fdr0.001_p0.0001_foc0.9_loc2000_fc4_min0.sorted.bb
      shortLabel        SW13H3K27ac peaks
      longLabel         SW13H3K27ac peaks
      type              bigBed
      visibility        pack
      priority          1412
      color             0,100,133
      subGroups         Group1=H3K27ac Group2=SW13 view=PEAK