## siBaf60a RNAseq composite with subgroup views track hoffmanRnaseqSiBaf60aSet compositeTrack on shortLabel Hoffman siBaf60a RNAseq longLabel Hoffman siBaf60a RNAseq priority 930 visibility full subGroup1 view Views \ COV=Coverage \ JUNC=Junction subGroup2 treatment Treatment \ siBaf60a=siBaf60a \ NTC=NTC subGroup3 content Data_Content \ REP=Replicates \ UNION=Union dimensions dimX=treatment dimY=content sortOrder treatment=+ content=+ view=+ type bed 3 configurable on ## Views track for siBaf60a RNAseq, coverage data track hoffmanRnaseqSiBaf60aView1 parent hoffmanRnaseqSiBaf60aSet shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 viewUi on ## RNAseq data coverage tracks ## siBaf60a replicate 1 track siBaf60a_r1 parent hoffmanRnaseqSiBaf60aView1 on bigDataUrl Baf60aL1_1.sickle.merged.topHat2pe_hg19.bw shortLabel RNAseq siBaf60a_r1 longLabel RNAseq siBaf60a_r1 type bigWig color 80,140,160 priority 931 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full subGroups treatment=siBaf60a content=REP view=COV ## siBaf60a replicate 2 track siBaf60a_r2 parent hoffmanRnaseqSiBaf60aView1 on bigDataUrl Baf60aL4_1.sickle.merged.topHat2pe_hg19.bw shortLabel RNAseq siBaf60a_r2 longLabel RNAseq siBaf60a_r2 type bigWig color 80,140,160 priority 932 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full subGroups treatment=siBaf60a content=REP view=COV ## siBaf60a replicate 3 track siBaf60a_r3 parent hoffmanRnaseqSiBaf60aView1 on bigDataUrl Baf60aL8_1.sickle.merged.topHat2pe_hg19.bw shortLabel RNAseq siBaf60a_r3 longLabel RNAseq siBaf60a_r3 type bigWig color 80,140,160 priority 933 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full subGroups treatment=siBaf60a content=REP view=COV ## Control replicate 1 track NTC_r1 parent hoffmanRnaseqSiBaf60aView1 on bigDataUrl NTCL2_1.sickle.merged.topHat2pe_hg19.bw shortLabel RNAseq NTC_r1 longLabel RNAseq NTC_r1 type bigWig color 160,145,160 priority 935 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full subGroups treatment=NTC content=REP view=COV ## Control replicate 2 track NTC_r2 parent hoffmanRnaseqSiBaf60aView1 on bigDataUrl NTCL3_1.sickle.merged.topHat2pe_hg19.bw shortLabel RNAseq NTC_r2 longLabel RNAseq NTC_r2 type bigWig color 160,145,160 priority 936 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full subGroups treatment=NTC content=REP view=COV ## Control replicate 3 track NTC_r3 parent hoffmanRnaseqSiBaf60aView1 on bigDataUrl NTCL5_1.sickle.merged.topHat2pe_hg19.bw shortLabel RNAseq NTC_r3 longLabel RNAseq NTC_r3 type bigWig color 160,145,160 priority 937 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full subGroups treatment=NTC content=REP view=COV ## RNAseq data coverage track union ## siBaf60a union coverage track siBaf60a_union parent hoffmanRnaseqSiBaf60aView1 on bigDataUrl siBaf60a_union.topHat2pe_hg19.bw shortLabel RNAseq siBaf60a longLabel RNAseq siBaf60a type bigWig color 0,100,125 priority 930 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on autoScale on viewLimits 0:200 visibility full subGroups treatment=siBaf60a content=UNION view=COV ## RNAseq data coverage track union ## NTC union coverage track NTC_union parent hoffmanRnaseqSiBaf60aView1 on bigDataUrl NTC_union.topHat2pe_hg19.bw shortLabel RNAseq NTC longLabel RNAseq NTC type bigWig color 118,95,118 priority 934 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on autoScale on viewLimits 0:200 visibility full subGroups treatment=NTC content=UNION view=COV ## Views track for siBaf60a RNAseq, junctions track hoffmanRnaseqSiBaf60aView2 parent hoffmanRnaseqSiBaf60aSet shortLabel RNAseq_junctions_Baf60a view JUNC visibility pack type bigBed 12 + allButtonPair on centerLabelsDense on dragAndDrop on thickDrawItem on scoreFilter 10 scoreFilterLimits 1:1000 # spectrum on # scoreMax 100 # scoreMin 1 viewUi on # color 255,0,0 # altColor 201,30,33 # minGrayLevel 6 # siBaf60a_r1 junctions track siBaf60a_r1_junc parent hoffmanRnaseqSiBaf60aView2 bigDataUrl Baf60aL1_1.sickle.merged.topHat2pe_hg19.sorted.bb shortLabel TopHat2 junctions siBaf60a_r1 longLabel TopHat2 junctions siBaf60a_r1 type bigBed 12 + color 80,140,160 visibility pack priority 951 subGroups treatment=siBaf60a content=REP view=JUNC # siBaf60a_r2 junctions track siBaf60a_r2_junc parent hoffmanRnaseqSiBaf60aView2 bigDataUrl Baf60aL4_1.sickle.merged.topHat2pe_hg19.sorted.bb shortLabel TopHat2 junctions siBaf60a_r2 longLabel TopHat2 junctions siBaf60a_r2 type bigBed 12 + color 80,140,160 visibility pack priority 952 subGroups treatment=siBaf60a content=REP view=JUNC # siBaf60a_r3 junctions track siBaf60a_r3_junc parent hoffmanRnaseqSiBaf60aView2 bigDataUrl Baf60aL8_1.sickle.merged.topHat2pe_hg19.sorted.bb shortLabel TopHat2 junctions siBaf60a_r3 longLabel TopHat2 junctions siBaf60a_r3 type bigBed 12 + color 80,140,160 visibility pack priority 953 subGroups treatment=siBaf60a content=REP view=JUNC # NTC_r1 junctions track NTC_r1_junc parent hoffmanRnaseqSiBaf60aView2 bigDataUrl NTCL2_1.sickle.merged.topHat2pe_hg19.sorted.bb shortLabel TopHat2 junctions NTC_r1 longLabel TopHat2 junctions NTC_r1 type bigBed 12 + color 160,145,160 visibility pack priority 955 subGroups treatment=NTC content=REP view=JUNC # NTC_r2 junctions track NTC_r2_junc parent hoffmanRnaseqSiBaf60aView2 bigDataUrl NTCL3_1.sickle.merged.topHat2pe_hg19.sorted.bb shortLabel TopHat2 junctions NTC_r2 longLabel TopHat2 junctions NTC_r2 type bigBed 12 + color 160,145,160 visibility pack priority 956 subGroups treatment=NTC content=REP view=JUNC # NTC_r3 junctions track NTC_r3_junc parent hoffmanRnaseqSiBaf60aView2 bigDataUrl NTCL5_1.sickle.merged.topHat2pe_hg19.sorted.bb shortLabel TopHat2 junctions NTC_r3 longLabel TopHat2 junctions NTC_r3 type bigBed 12 + color 160,145,160 visibility pack priority 957 subGroups treatment=NTC content=REP view=JUNC # siBaf60a_combined_junctions.bb track siBaf60a_junc parent hoffmanRnaseqSiBaf60aView2 on bigDataUrl siBaf60a.TopHat2_hg19.combinedJunctions.bb shortLabel TopHat2 junctions siBaf60a longLabel TopHat2 junctions siBaf60a type bigBed 12 + visibility pack priority 950 bedNameLabel Junction_readCounts color 0,100,125 spectrum on scoreMin 10 scoreMax 100 thickDrawItem on subGroups treatment=siBaf60a content=UNION view=JUNC # NTC_combined_junctions.bb track NTC_junc parent hoffmanRnaseqSiBaf60aView2 on bigDataUrl NTC.TopHat2_hg19.combinedJunctions.bb shortLabel TopHat2 junctions NTC longLabel TopHat2 junctions NTC type bigBed 12 + visibility pack priority 954 bedNameLabel Junction_readCounts color 118,95,118 spectrum on scoreMin 10 scoreMax 100 thickDrawItem on subGroups treatment=NTC content=UNION view=JUNC