## siBrg1 RNAseq composite with subgroup views track hoffmanRnaseqSiBrg1Set compositeTrack on shortLabel Hoffman siBrg1 RNAseq longLabel Hoffman siBrg1 RNAseq priority 830 visibility full subGroup1 view Views \ COV=Coverage \ JUNC=Junction subGroup2 treatment Treatment \ siBrg1=siBrg1 \ Control=Control subGroup3 content Data_Content \ REP=Replicates \ UNION=Union dimensions dimX=treatment dimY=content sortOrder treatment=+ content=+ view=+ type bed 3 configurable on ## Views track for siBrg1 RNAseq, coverage data track hoffmanRnaseqSiBrg1View1 parent hoffmanRnaseqSiBrg1Set shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 viewUi on ## RNAseq data coverage tracks ## siBrg1 replicate 1 track siBrg1_r1 parent hoffmanRnaseqSiBrg1View1 on bigDataUrl ES638_merged.topHat2pe.bw shortLabel RNAseq siBrg1_r1 longLabel RNAseq siBrg1_r1 type bigWig color 176,32,36 priority 831 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full subGroups treatment=siBrg1 content=REP view=COV ## siBrg1 replicate 2 track siBrg1_r2 parent hoffmanRnaseqSiBrg1View1 on bigDataUrl ES639_merged.topHat2pe.bw shortLabel RNAseq siBrg1_r2 longLabel RNAseq siBrg1_r2 type bigWig color 176,32,36 priority 832 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full subGroups treatment=siBrg1 content=REP view=COV ## siBrg1 replicate 3 track siBrg1_r3 parent hoffmanRnaseqSiBrg1View1 on bigDataUrl ES640_merged.topHat2pe.bw shortLabel RNAseq siBrg1_r3 longLabel RNAseq siBrg1_r3 type bigWig color 176,32,36 priority 833 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full subGroups treatment=siBrg1 content=REP view=COV ## Control replicate 1 track Control_r1 parent hoffmanRnaseqSiBrg1View1 on bigDataUrl ES641_merged.topHat2pe.bw shortLabel RNAseq Control_r1 longLabel RNAseq Control_r1 type bigWig color 110,110,140 priority 835 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full subGroups treatment=Control content=REP view=COV ## Control replicate 2 track Control_r2 parent hoffmanRnaseqSiBrg1View1 on bigDataUrl ES642_merged.topHat2pe.bw shortLabel RNAseq Control_r2 longLabel RNAseq Control_r2 type bigWig color 110,110,140 priority 836 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full subGroups treatment=Control content=REP view=COV ## Control replicate 3 track Control_r3 parent hoffmanRnaseqSiBrg1View1 on bigDataUrl ES643_merged.topHat2pe.bw shortLabel RNAseq Control_r3 longLabel RNAseq Control_r3 type bigWig color 110,110,140 priority 837 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full subGroups treatment=Control content=REP view=COV # Union of coverages across replicates per sample group ## RNAseq data coverage track union ## siBrg1 union coverage track siBrg1_union parent hoffmanRnaseqSiBrg1View1 on bigDataUrl siBrg1_union.TopHat2pe.bw shortLabel RNAseq siBrg1 longLabel RNAseq siBrg1 type bigWig color 146,22,24 priority 830 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on autoScale on viewLimits 0:200 visibility full subGroups treatment=siBrg1 content=UNION view=COV ## Control union coverage track Control_union parent hoffmanRnaseqSiBrg1View1 on bigDataUrl Control_union.TopHat2pe.bw shortLabel RNAseq Control longLabel RNAseq Control type bigWig color 90,90,110 priority 834 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on autoScale on viewLimits 0:200 visibility full subGroups treatment=Control content=UNION view=COV ## Views track for siBrg1 RNAseq, junctions track hoffmanRnaseqSiBrg1View2 parent hoffmanRnaseqSiBrg1Set shortLabel RNAseq_junctions view JUNC visibility pack type bigBed 12 allButtonPair on centerLabelsDense on dragAndDrop on thickDrawItem on scoreFilter 10 scoreFilterLimits 1:1000 viewUi on # siBrg1_r1 junctions track siBrg1_r1_junc parent hoffmanRnaseqSiBrg1View2 bigDataUrl ES638_merged.junctions.bb shortLabel TopHat2 junctions siBrg1_r1 longLabel TopHat2 junctions siBrg1_r1 type bigBed 12 color 176,32,36 visibility pack priority 851 subGroups treatment=siBrg1 content=REP view=JUNC # siBrg1_r2 junctions track siBrg1_r2_junc parent hoffmanRnaseqSiBrg1View2 bigDataUrl ES639_merged.junctions.bb shortLabel TopHat2 junctions siBrg1_r2 longLabel TopHat2 junctions siBrg1_r2 type bigBed 12 color 176,32,36 visibility pack priority 852 subGroups treatment=siBrg1 content=REP view=JUNC # siBrg1_r3 junctions track siBrg1_r3_junc parent hoffmanRnaseqSiBrg1View2 bigDataUrl ES640_merged.junctions.bb shortLabel TopHat2 junctions siBrg1_r3 longLabel TopHat2 junctions siBrg1_r3 type bigBed 12 color 176,32,36 visibility pack priority 853 subGroups treatment=siBrg1 content=REP view=JUNC # Control_r1 junctions track Control_r1_junc parent hoffmanRnaseqSiBrg1View2 bigDataUrl ES641_merged.junctions.bb shortLabel TopHat2 junctions Control_r1 longLabel TopHat2 junctions Control_r1 type bigBed 12 color 110,110,140 visibility pack priority 855 subGroups treatment=Control content=REP view=JUNC # Control_r2 junctions track Control_r2_junc parent hoffmanRnaseqSiBrg1View2 bigDataUrl ES642_merged.junctions.bb shortLabel TopHat2 junctions Control_r2 longLabel TopHat2 junctions Control_r2 type bigBed 12 color 110,110,140 visibility pack priority 856 subGroups treatment=Control content=REP view=JUNC # Control_r3 junctions track Control_r3_junc parent hoffmanRnaseqSiBrg1View2 bigDataUrl ES643_merged.junctions.bb shortLabel TopHat2 junctions Control_r3 longLabel TopHat2 junctions Control_r3 type bigBed 12 color 110,110,140 visibility pack priority 857 subGroups treatment=Control content=REP view=JUNC # siBrg1 combined junctions # siBrg1_combined_junctions.bb track siBrg1_junc parent hoffmanRnaseqSiBrg1View2 on bigDataUrl siBrg1_combined_junctions.bed12sort.bb shortLabel TopHat2 junctions siBrg1 longLabel TopHat2 junctions siBrg1 type bigBed 12 visibility pack priority 850 spectrum on scoreMin 10 scoreMax 100 # color 73,11,12 color 150,0,0 # altColor 201,30,33 # scoreFilter 10 # scoreFilterLimits 1:1000 # thickDrawItem on subGroups treatment=siBrg1 content=UNION view=JUNC # Control combined junctions # Control_combined_junctions.bb track Control_junc parent hoffmanRnaseqSiBrg1View2 on bigDataUrl Control_combined_junctions.bed12sort.bb shortLabel TopHat2 junctions Control longLabel TopHat2 junctions Control type bigBed 12 visibility pack priority 854 spectrum on scoreMin 10 scoreMax 100 # color 45,45,55 color 100,100,100 # altColor 149,149,183 # scoreFilter 10 # scoreFilterLimits 1:1000 # thickDrawItem on subGroups treatment=Control content=UNION view=JUNC