#!/bin/bash
#
#cat trackDb_mergedCoverages_01aug2013.txt trackDb_junctionsMerged.txt trackDb_MiSeqCoverages_09aug2013.txt > trackDb.txt

## New method concatenates multiple trackDb_views_PROJECT.txt files
## where each file contains a compositeTrack composed of views,
## one view for each data type (bigWig, bigBed).
## The tracks are also expected to have subGroups for
## filtering.

#cat trackDb_views_*.txt > trackDb.txt

cat trackDb_views_MiSeq.txt \
    trackDb_views_siBrg1.txt \
    trackDb_views_siBaf60a.txt \
    trackDb_views_RNApolII.txt \
> trackDb.txt
exit;

## Omitted this track section since H3K27ac appears in the Rubino hub
#    trackDb_views_H3K27ac_12jan2015.txt \

## Omitted this section since it appears in the Mark Rubino hub, and the track names clashed
#    trackDb_views_hoffmanH3K27acFeb2015-12files-v3_10jun2015.txt \


## Omit the command below
cat \
   trackDb_mergedCoverages_01aug2013.txt \
   trackDb_junctionsMerged.txt \
   trackDb_MiSeqCoveragesSlop200_27sep2013.txt \
   trackDb_findPeaks-Brg1-RNAPolII.txt \
   trackDb_MiSeqCoverages_dec2013.txt \
   trackDb_findPeaks-Brg1-RNAPolII_jan2014.txt \
> trackDb.txt

#trackDb_MiSeqCoverages_09aug2013.txt \