#################################### ## track set ## NG167_strandedCoverage track NG167strandedCov superTrack on show shortLabel NG167_strandedCoverage longLabel NG167_strandedCoverage priority 1000 # ################################## # # Overlay multiple stranded tracks track siBaf60a_mESC_stranded superTrack NG167strandedCov full container multiWig aggregate transparentOverlay shortLabel siBaf60a_mESC stranded coverage longLabel siBaf60a_mESC stranded coverage showSubtrackColorOnUi on type bigWig priority 1001 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full # ################################## track siBaf60a_mESC_pos parent siBaf60a_mESC_stranded bigDataUrl siBaf60a_mESC.pos.bw type bigWig color 92,46,84 priority 1002 # ################################## track siBaf60a_mESC_neg parent siBaf60a_mESC_stranded bigDataUrl siBaf60a_mESC.neg.bw type bigWig color 130,47,47 priority 1001 # ################################## # # Overlay multiple stranded tracks track siNT_mESC_stranded superTrack NG167strandedCov full container multiWig aggregate transparentOverlay shortLabel siNT_mESC stranded coverage longLabel siNT_mESC stranded coverage showSubtrackColorOnUi on type bigWig priority 1003 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full # ################################## track siNT_mESC_pos parent siNT_mESC_stranded bigDataUrl siNT_mESC.pos.bw type bigWig color 86,43,44 priority 1004 # ################################## track siNT_mESC_neg parent siNT_mESC_stranded bigDataUrl siNT_mESC.neg.bw type bigWig color 133,73,33 priority 1003 ## Beginning of track view track hoffmanNG167siBaf60aRNAseq compositeTrack on shortLabel hoffmanNG167 siBaf60a RNAseq longLabel hoffmanNG167 siBaf60a RNAseq priority 1100 visibility full type bed 3 configurable on subGroup1 view Views \ COV=Coverage \ PEAK=Peaks \ JUNC=Junctions subGroup2 Group1 Group1 \ siBaf60a=siBaf60a \ siNT=siNT subGroup3 Group2 Group2 \ mESC=mESC dimensions dimX=Group1 dimY=Group2 sortOrder Group1=+ Group2=+ view=+ ## Views track coverage data track hoffmanNG167siBaf60aRNAseqView1 parent hoffmanNG167siBaf60aRNAseq shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 viewUi on ## Coverage track track ES1330_coverage_v1 parent hoffmanNG167siBaf60aRNAseqView1 on bigDataUrl ES1330_1.sickle.merged.cutadapt.topHat2peStr_mm10.neg.bw shortLabel siBaf60a_mESC (-) ES1330 coverage longLabel siBaf60a_mESC (-) ES1330 coverage type bigWig color 123,31,31 priority 1102 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=siBaf60a Group2=mESC view=COV ## Coverage track track ES1330_coverage_v2 parent hoffmanNG167siBaf60aRNAseqView1 on bigDataUrl ES1330_1.sickle.merged.cutadapt.topHat2peStr_mm10.pos.bw shortLabel siBaf60a_mESC (+) ES1330 coverage longLabel siBaf60a_mESC (+) ES1330 coverage type bigWig color 123,31,31 priority 1104 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=siBaf60a Group2=mESC view=COV ## Coverage track track ES1331_coverage_v1 parent hoffmanNG167siBaf60aRNAseqView1 on bigDataUrl ES1331_1.sickle.merged.cutadapt.topHat2peStr_mm10.neg.bw shortLabel siBaf60a_mESC (-) ES1331 coverage longLabel siBaf60a_mESC (-) ES1331 coverage type bigWig color 123,31,31 priority 1106 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=siBaf60a Group2=mESC view=COV ## Coverage track track ES1331_coverage_v2 parent hoffmanNG167siBaf60aRNAseqView1 on bigDataUrl ES1331_1.sickle.merged.cutadapt.topHat2peStr_mm10.pos.bw shortLabel siBaf60a_mESC (+) ES1331 coverage longLabel siBaf60a_mESC (+) ES1331 coverage type bigWig color 123,31,31 priority 1108 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=siBaf60a Group2=mESC view=COV ## Coverage track track ES1332_coverage_v1 parent hoffmanNG167siBaf60aRNAseqView1 on bigDataUrl ES1332_1.sickle.merged.cutadapt.topHat2peStr_mm10.neg.bw shortLabel siBaf60a_mESC (-) ES1332 coverage longLabel siBaf60a_mESC (-) ES1332 coverage type bigWig color 123,31,31 priority 1110 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=siBaf60a Group2=mESC view=COV ## Coverage track track ES1332_coverage_v2 parent hoffmanNG167siBaf60aRNAseqView1 on bigDataUrl ES1332_1.sickle.merged.cutadapt.topHat2peStr_mm10.pos.bw shortLabel siBaf60a_mESC (+) ES1332 coverage longLabel siBaf60a_mESC (+) ES1332 coverage type bigWig color 123,31,31 priority 1112 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=siBaf60a Group2=mESC view=COV ## Coverage track track ES1327_coverage_v1 parent hoffmanNG167siBaf60aRNAseqView1 on bigDataUrl ES1327_1.sickle.merged.cutadapt.topHat2peStr_mm10.neg.bw shortLabel siNT_mESC (-) ES1327 coverage longLabel siNT_mESC (-) ES1327 coverage type bigWig color 141,102,0 priority 1114 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=siNT Group2=mESC view=COV ## Coverage track track ES1327_coverage_v2 parent hoffmanNG167siBaf60aRNAseqView1 on bigDataUrl ES1327_1.sickle.merged.cutadapt.topHat2peStr_mm10.pos.bw shortLabel siNT_mESC (+) ES1327 coverage longLabel siNT_mESC (+) ES1327 coverage type bigWig color 141,102,0 priority 1116 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=siNT Group2=mESC view=COV ## Coverage track track ES1328_coverage_v1 parent hoffmanNG167siBaf60aRNAseqView1 on bigDataUrl ES1328_1.sickle.merged.cutadapt.topHat2peStr_mm10.neg.bw shortLabel siNT_mESC (-) ES1328 coverage longLabel siNT_mESC (-) ES1328 coverage type bigWig color 141,102,0 priority 1118 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=siNT Group2=mESC view=COV ## Coverage track track ES1328_coverage_v2 parent hoffmanNG167siBaf60aRNAseqView1 on bigDataUrl ES1328_1.sickle.merged.cutadapt.topHat2peStr_mm10.pos.bw shortLabel siNT_mESC (+) ES1328 coverage longLabel siNT_mESC (+) ES1328 coverage type bigWig color 141,102,0 priority 1120 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=siNT Group2=mESC view=COV ## Coverage track track ES1329_coverage_v1 parent hoffmanNG167siBaf60aRNAseqView1 on bigDataUrl ES1329_1.sickle.merged.cutadapt.topHat2peStr_mm10.neg.bw shortLabel siNT_mESC (-) ES1329 coverage longLabel siNT_mESC (-) ES1329 coverage type bigWig color 141,102,0 priority 1122 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=siNT Group2=mESC view=COV ## Coverage track track ES1329_coverage_v2 parent hoffmanNG167siBaf60aRNAseqView1 on bigDataUrl ES1329_1.sickle.merged.cutadapt.topHat2peStr_mm10.pos.bw shortLabel siNT_mESC (+) ES1329 coverage longLabel siNT_mESC (+) ES1329 coverage type bigWig color 141,102,0 priority 1124 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=siNT Group2=mESC view=COV ## Views track for RNAseq, junctions data track hoffmanNG167siBaf60aRNAseqView2 parent hoffmanNG167siBaf60aRNAseq shortLabel RNAseq_junctions view JUNC visibility pack type bigBed 12 allButtonPair on centerLabelsDense on dragAndDrop on thickDrawItem on scoreFilter 20 scoreFilterLimits 1:1000 viewUi on # combined junctions track track ES1330_junctions parent hoffmanNG167siBaf60aRNAseqView2 on bigDataUrl ES1330_1.sickle.merged.cutadapt.topHat2peStr_mm10.sorted.junctions.bb shortLabel siBaf60a_mESC ES1330 junctions longLabel siBaf60a_mESC ES1330 junctions type bigBed 12 visibility pack priority 1126 scoreMin 10 scoreMax 100 color 123,31,31 subGroups Group1=siBaf60a Group2=mESC view=JUNC # combined junctions track track ES1331_junctions parent hoffmanNG167siBaf60aRNAseqView2 on bigDataUrl ES1331_1.sickle.merged.cutadapt.topHat2peStr_mm10.sorted.junctions.bb shortLabel siBaf60a_mESC ES1331 junctions longLabel siBaf60a_mESC ES1331 junctions type bigBed 12 visibility pack priority 1128 scoreMin 10 scoreMax 100 color 123,31,31 subGroups Group1=siBaf60a Group2=mESC view=JUNC # combined junctions track track ES1332_junctions parent hoffmanNG167siBaf60aRNAseqView2 on bigDataUrl ES1332_1.sickle.merged.cutadapt.topHat2peStr_mm10.sorted.junctions.bb shortLabel siBaf60a_mESC ES1332 junctions longLabel siBaf60a_mESC ES1332 junctions type bigBed 12 visibility pack priority 1130 scoreMin 10 scoreMax 100 color 123,31,31 subGroups Group1=siBaf60a Group2=mESC view=JUNC # combined junctions track track ES1327_junctions parent hoffmanNG167siBaf60aRNAseqView2 on bigDataUrl ES1327_1.sickle.merged.cutadapt.topHat2peStr_mm10.sorted.junctions.bb shortLabel siNT_mESC ES1327 junctions longLabel siNT_mESC ES1327 junctions type bigBed 12 visibility pack priority 1132 scoreMin 10 scoreMax 100 color 141,102,0 subGroups Group1=siNT Group2=mESC view=JUNC # combined junctions track track ES1328_junctions parent hoffmanNG167siBaf60aRNAseqView2 on bigDataUrl ES1328_1.sickle.merged.cutadapt.topHat2peStr_mm10.sorted.junctions.bb shortLabel siNT_mESC ES1328 junctions longLabel siNT_mESC ES1328 junctions type bigBed 12 visibility pack priority 1134 scoreMin 10 scoreMax 100 color 141,102,0 subGroups Group1=siNT Group2=mESC view=JUNC # combined junctions track track ES1329_junctions parent hoffmanNG167siBaf60aRNAseqView2 on bigDataUrl ES1329_1.sickle.merged.cutadapt.topHat2peStr_mm10.sorted.junctions.bb shortLabel siNT_mESC ES1329 junctions longLabel siNT_mESC ES1329 junctions type bigBed 12 visibility pack priority 1136 scoreMin 10 scoreMax 100 color 141,102,0 subGroups Group1=siNT Group2=mESC view=JUNC