#################################### ## track set ## NG167_strandedCoverage track NG167strandedCov superTrack on show shortLabel NG167_strandedCoverage longLabel NG167_strandedCoverage priority 1000 # ################################## # # Overlay multiple stranded tracks track siBaf60a_mESC_stranded superTrack NG167strandedCov full container multiWig aggregate transparentOverlay shortLabel siBaf60a_mESC stranded coverage longLabel siBaf60a_mESC stranded coverage showSubtrackColorOnUi on type bigWig priority 1001 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full # ################################## track siBaf60a_mESC_pos parent siBaf60a_mESC_stranded bigDataUrl siBaf60a_mESC.pos.bw type bigWig color 92,46,84 priority 1002 # ################################## track siBaf60a_mESC_neg parent siBaf60a_mESC_stranded bigDataUrl siBaf60a_mESC.neg.bw type bigWig color 130,47,47 priority 1001 # ################################## # # Overlay multiple stranded tracks track siNT_mESC_stranded superTrack NG167strandedCov full container multiWig aggregate transparentOverlay shortLabel siNT_mESC stranded coverage longLabel siNT_mESC stranded coverage showSubtrackColorOnUi on type bigWig priority 1003 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full # ################################## track siNT_mESC_pos parent siNT_mESC_stranded bigDataUrl siNT_mESC.pos.bw type bigWig color 86,43,44 priority 1004 # ################################## track siNT_mESC_neg parent siNT_mESC_stranded bigDataUrl siNT_mESC.neg.bw type bigWig color 133,73,33 priority 1003 ## Beginning of track view track ENCODE_mESC compositeTrack on shortLabel ENCODE longLabel ENCODE_mESC priority 500 visibility full type bed 3 configurable on ## Views track coverage data track ENCODE_mESCView1 parent ENCODE_mESC shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 viewUi on ## Coverage track track 27ac parent ENCODE_mESCView1 on bigDataUrl 27ac.dedupe.bw shortLabel 27ac longLabel 27ac type bigWig color 0,0,200 priority 501 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide ## Coverage track track 4me1 parent ENCODE_mESCView1 on bigDataUrl 4me1.dedupe.bw shortLabel 4me1 longLabel 4me1 type bigWig color 0,0,175 priority 502 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide ## Coverage track track 4me3 parent ENCODE_mESCView1 on bigDataUrl 4me3.dedupe.bw shortLabel 4me3 longLabel 4me3 type bigWig color 0,0,150 priority 503 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide ## Coverage track track 36me3 parent ENCODE_mESCView1 on bigDataUrl 36me3.dedupe.bw shortLabel 36me3 longLabel 36me3 type bigWig color 0,0,125 priority 504 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide ## Coverage track track 9ac parent ENCODE_mESCView1 on bigDataUrl 9ac.dedupe.bw shortLabel 9ac longLabel 9ac type bigWig color 0,0,100 priority 505 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide ## Coverage track track 27me3 parent ENCODE_mESCView1 on bigDataUrl 27me3.dedupe.bw shortLabel 27me3 longLabel 27me3 type bigWig color 0,0,75 priority 506 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide ## Coverage track track 9me3 parent ENCODE_mESCView1 on bigDataUrl 9me3.dedupe.bw shortLabel 9me3 longLabel 9me3 type bigWig color 0,0,50 priority 507 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide ## Beginning of track view track NS50093ArcherHoffman compositeTrack on shortLabel NS50093ArcherHoffman longLabel NS50093ArcherHoffman priority 900 visibility full type bed 3 configurable on subGroup1 view Views \ COV=Coverage \ PEAK=Peaks \ JUNC=Junctions subGroup2 Group1 Group1 \ Brg1=Brg1 \ Fip1=Fip1 \ Input=Input subGroup3 Group2 Group2 \ mESC=mESC dimensions dimX=Group1 dimY=Group2 sortOrder Group1=+ Group2=+ view=+ ## Views track coverage data track NS50093ArcherHoffmanView1 parent NS50093ArcherHoffman shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 viewUi on ## Coverage track track Brg1_Merged parent NS50093ArcherHoffmanView1 on bigDataUrl Brg1_Merged.dedupe.cov1x.bw shortLabel Brg1_Merged longLabel Brg1_Merged type bigWig color 123,31,31 priority 910 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Brg1 Group2=mESC view=COV ## Coverage track track Fip1_Merged parent NS50093ArcherHoffmanView1 on bigDataUrl Fip1_Merged.dedupe.cov1x.bw shortLabel Fip1_Merged longLabel Fip1_Merged type bigWig color 163,92,4 priority 911 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Fip1 Group2=mESC view=COV ## Coverage track track Input_Merged parent NS50093ArcherHoffmanView1 on bigDataUrl Input_Merged.dedupe.cov1x.bw shortLabel Input_Merged longLabel Input_Merged type bigWig color 29,86,7 priority 912 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Input Group2=mESC view=COV # Fip1.dedupe.cov1x.bw # Brg1.dedupe.cov1x.bw # Input.dedupe.cov1x.bw ## Views track for ChIPseq peaks track NS50093ArcherHoffmanView3 parent NS50093ArcherHoffman shortLabel Peaks view PEAK visibility pack type bigBed allButtonPair on centerLabelsDense on dragAndDrop on viewUi on # Peak track track Fip1_Merged_peaks parent NS50093ArcherHoffmanView3 on bigDataUrl Fip1_Merged_peaks.sorted.bb shortLabel Fip1_Merged_peaks longLabel Fip1_Merged type bigBed visibility pack priority 910 color 163,92,4 subGroups Group1=Fip1 Group2=mESC view=PEAK # Peak track track fip1_homer_peaks_10 parent NS50093ArcherHoffmanView3 on bigDataUrl peaks_10.sorted.bb shortLabel Homer peaks 10 longLabel Homer peaks 10 type bigBed visibility pack priority 912 color 163,92,4 subGroups Group1=Fip1 Group2=mESC view=PEAK ## Beginning of track view track Brg1_Novus_NS compositeTrack on shortLabel Brg1_Novus longLabel Brg1_Novus_NS priority 800 visibility full type bed 3 configurable on subGroup1 view Views \ COV=Coverage \ PEAK=Peaks \ JUNC=Junctions subGroup2 Group1 Group1 \ B=Brg1 \ I=Input subGroup3 Group2 Group2 \ mESC=mESC dimensions dimX=Group1 dimY=Group2 sortOrder Group1=+ Group2=+ view=+ ## Views track coverage data track Brg1_Novus_NSView1 parent Brg1_Novus_NS shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 viewUi on ## Coverage track track B1 parent Brg1_Novus_NSView1 on bigDataUrl B1.sorted.dedupe.bw shortLabel B1 longLabel B1 type bigWig color 175,0,0 priority 802 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=B Group2=mESC view=COV ## Coverage track track B2 parent Brg1_Novus_NSView1 on bigDataUrl B2.sorted.dedupe.bw shortLabel B2 longLabel B2 type bigWig color 125,0,0 priority 804 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Brg1 Group2=mESC view=COV ## Coverage track track IN1 parent Brg1_Novus_NSView1 on bigDataUrl IN1.sorted.dedupe.bw shortLabel IN1 longLabel IN1 type bigWig color 0,175,0 priority 806 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=I Group2=mESC view=COV ## Coverage track track IN2 parent Brg1_Novus_NSView1 on bigDataUrl IN2.sorted.dedupe.bw shortLabel IN2 longLabel IN2 type bigWig color 0,125,0 priority 808 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=I Group2=mESC view=COV ## Views track for ChIPseq peaks track Brg1_Novus_NSView2 parent Brg1_Novus_NS shortLabel Peaks view PEAK visibility pack type bigBed allButtonPair on centerLabelsDense on dragAndDrop on viewUi on # Peak track track B1peaks.2 parent Brg1_Novus_NSView2 on bigDataUrl B1peaks.2.bb shortLabel B1peaks.2 longLabel B1peaks.2 type bigBed visibility pack priority 803 color 175,0,0 subGroups Group1=B Group2=mESC view=PEAK ## Beginning of track view track NS50201_RBP_ChIPseq compositeTrack on shortLabel NS50201 longLabel NS50201 priority 1200 visibility full type bed 3 configurable on subGroup1 view Views \ COV=Coverage \ PEAK=Peaks \ JUNC=Junctions subGroup2 Group1 Group1 \ Cstf77=Cstf77 \ Sfpq=Sfpq \ Nono=Nono subGroup3 Group2 Group2 \ mESC=mESC dimensions dimX=Group1 dimY=Group2 sortOrder Group1=+ Group2=+ view=+ ## Views track coverage data track NS50201_RBP_ChIPseqView1 parent NS50201_RBP_ChIPseq shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 viewUi on ## Coverage track track Cstf77 parent NS50201_RBP_ChIPseqView1 on bigDataUrl Cstf77.bw shortLabel Cstf77 longLabel Cstf77 type bigWig color 0,100,50 priority 1202 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Cstf77 Group2=mESC view=COV ## Coverage track track Sfpq parent NS50201_RBP_ChIPseqView1 on bigDataUrl Sfpq.bw shortLabel Sfpq longLabel Sfpq type bigWig color 0,120,60 priority 1204 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Sfpq Group2=mESC view=COV ## Coverage track track Nono parent NS50201_RBP_ChIPseqView1 on bigDataUrl Nono.bw shortLabel Nono longLabel Nono type bigWig color 0,140,70 priority 1206 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Nono Group2=mESC view=COV ## Beginning of track view track hoffmanNG167siBaf60aRNAseq compositeTrack on shortLabel hoffman NG167 siBaf60a RNAseq longLabel hoffman NG167 siBaf60a RNAseq priority 1100 visibility full type bed 3 configurable on subGroup1 view Views \ COV=Coverage \ PEAK=Peaks \ JUNC=Junctions subGroup2 Group1 Group1 \ siBaf60a=siBaf60a \ siNT=siNT subGroup3 Group2 Group2 \ mESC=mESC dimensions dimX=Group1 dimY=Group2 sortOrder Group1=+ Group2=+ view=+ ## Views track coverage data track hoffmanNG167siBaf60aRNAseqView1 parent hoffmanNG167siBaf60aRNAseq shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 viewUi on ## Coverage track track ES1330_coverage_v1 parent hoffmanNG167siBaf60aRNAseqView1 on bigDataUrl ES1330_1.sickle.merged.cutadapt.topHat2peStr_mm10.slop0.neg.bw shortLabel siBaf60a_mESC ES1330 coverage longLabel siBaf60a_mESC ES1330 coverage type bigWig color 123,31,31 priority 1102 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=siBaf60a Group2=mESC view=COV ## Coverage track track ES1330_coverage_v2 parent hoffmanNG167siBaf60aRNAseqView1 on bigDataUrl ES1330_1.sickle.merged.cutadapt.topHat2peStr_mm10.slop0.pos.bw shortLabel siBaf60a_mESC ES1330 coverage longLabel siBaf60a_mESC ES1330 coverage type bigWig color 123,31,31 priority 1104 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=siBaf60a Group2=mESC view=COV ## Coverage track track ES1331_coverage_v1 parent hoffmanNG167siBaf60aRNAseqView1 on bigDataUrl ES1331_1.sickle.merged.cutadapt.topHat2peStr_mm10.slop0.neg.bw shortLabel siBaf60a_mESC ES1331 coverage longLabel siBaf60a_mESC ES1331 coverage type bigWig color 123,31,31 priority 1106 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=siBaf60a Group2=mESC view=COV ## Coverage track track ES1331_coverage_v2 parent hoffmanNG167siBaf60aRNAseqView1 on bigDataUrl ES1331_1.sickle.merged.cutadapt.topHat2peStr_mm10.slop0.pos.bw shortLabel siBaf60a_mESC ES1331 coverage longLabel siBaf60a_mESC ES1331 coverage type bigWig color 123,31,31 priority 1108 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=siBaf60a Group2=mESC view=COV ## Coverage track track ES1332_coverage_v1 parent hoffmanNG167siBaf60aRNAseqView1 on bigDataUrl ES1332_1.sickle.merged.cutadapt.topHat2peStr_mm10.slop0.neg.bw shortLabel siBaf60a_mESC ES1332 coverage longLabel siBaf60a_mESC ES1332 coverage type bigWig color 123,31,31 priority 1110 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=siBaf60a Group2=mESC view=COV ## Coverage track track ES1332_coverage_v2 parent hoffmanNG167siBaf60aRNAseqView1 on bigDataUrl ES1332_1.sickle.merged.cutadapt.topHat2peStr_mm10.slop0.pos.bw shortLabel siBaf60a_mESC ES1332 coverage longLabel siBaf60a_mESC ES1332 coverage type bigWig color 123,31,31 priority 1112 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=siBaf60a Group2=mESC view=COV ## Coverage track track ES1327_coverage_v1 parent hoffmanNG167siBaf60aRNAseqView1 on bigDataUrl ES1327_1.sickle.merged.cutadapt.topHat2peStr_mm10.slop0.neg.bw shortLabel siNT_mESC ES1327 coverage longLabel siNT_mESC ES1327 coverage type bigWig color 141,102,0 priority 1114 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=siNT Group2=mESC view=COV ## Coverage track track ES1327_coverage_v2 parent hoffmanNG167siBaf60aRNAseqView1 on bigDataUrl ES1327_1.sickle.merged.cutadapt.topHat2peStr_mm10.slop0.pos.bw shortLabel siNT_mESC ES1327 coverage longLabel siNT_mESC ES1327 coverage type bigWig color 141,102,0 priority 1116 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=siNT Group2=mESC view=COV ## Coverage track track ES1328_coverage_v1 parent hoffmanNG167siBaf60aRNAseqView1 on bigDataUrl ES1328_1.sickle.merged.cutadapt.topHat2peStr_mm10.slop0.neg.bw shortLabel siNT_mESC ES1328 coverage longLabel siNT_mESC ES1328 coverage type bigWig color 141,102,0 priority 1118 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=siNT Group2=mESC view=COV ## Coverage track track ES1328_coverage_v2 parent hoffmanNG167siBaf60aRNAseqView1 on bigDataUrl ES1328_1.sickle.merged.cutadapt.topHat2peStr_mm10.slop0.pos.bw shortLabel siNT_mESC ES1328 coverage longLabel siNT_mESC ES1328 coverage type bigWig color 141,102,0 priority 1120 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=siNT Group2=mESC view=COV ## Coverage track track ES1329_coverage_v1 parent hoffmanNG167siBaf60aRNAseqView1 on bigDataUrl ES1329_1.sickle.merged.cutadapt.topHat2peStr_mm10.slop0.neg.bw shortLabel siNT_mESC ES1329 coverage longLabel siNT_mESC ES1329 coverage type bigWig color 141,102,0 priority 1122 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=siNT Group2=mESC view=COV ## Coverage track track ES1329_coverage_v2 parent hoffmanNG167siBaf60aRNAseqView1 on bigDataUrl ES1329_1.sickle.merged.cutadapt.topHat2peStr_mm10.slop0.pos.bw shortLabel siNT_mESC ES1329 coverage longLabel siNT_mESC ES1329 coverage type bigWig color 141,102,0 priority 1124 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=siNT Group2=mESC view=COV ## Views track for RNAseq, junctions data track hoffmanNG167siBaf60aRNAseqView2 parent hoffmanNG167siBaf60aRNAseq shortLabel RNAseq_junctions view JUNC visibility pack type bigBed 12 allButtonPair on centerLabelsDense on dragAndDrop on thickDrawItem on scoreFilter 20 scoreFilterLimits 1:1000 viewUi on # combined junctions track track ES1330_junctions parent hoffmanNG167siBaf60aRNAseqView2 on bigDataUrl ES1330_1.sickle.merged.cutadapt.topHat2peStr_mm10.sorted.junctions.bb shortLabel siBaf60a_mESC ES1330 junctions longLabel siBaf60a_mESC ES1330 junctions type bigBed 12 visibility pack priority 1126 scoreMin 10 scoreMax 100 color 123,31,31 subGroups Group1=siBaf60a Group2=mESC view=JUNC # combined junctions track track ES1331_junctions parent hoffmanNG167siBaf60aRNAseqView2 on bigDataUrl ES1331_1.sickle.merged.cutadapt.topHat2peStr_mm10.sorted.junctions.bb shortLabel siBaf60a_mESC ES1331 junctions longLabel siBaf60a_mESC ES1331 junctions type bigBed 12 visibility pack priority 1128 scoreMin 10 scoreMax 100 color 123,31,31 subGroups Group1=siBaf60a Group2=mESC view=JUNC # combined junctions track track ES1332_junctions parent hoffmanNG167siBaf60aRNAseqView2 on bigDataUrl ES1332_1.sickle.merged.cutadapt.topHat2peStr_mm10.sorted.junctions.bb shortLabel siBaf60a_mESC ES1332 junctions longLabel siBaf60a_mESC ES1332 junctions type bigBed 12 visibility pack priority 1130 scoreMin 10 scoreMax 100 color 123,31,31 subGroups Group1=siBaf60a Group2=mESC view=JUNC # combined junctions track track ES1327_junctions parent hoffmanNG167siBaf60aRNAseqView2 on bigDataUrl ES1327_1.sickle.merged.cutadapt.topHat2peStr_mm10.sorted.junctions.bb shortLabel siNT_mESC ES1327 junctions longLabel siNT_mESC ES1327 junctions type bigBed 12 visibility pack priority 1132 scoreMin 10 scoreMax 100 color 141,102,0 subGroups Group1=siNT Group2=mESC view=JUNC # combined junctions track track ES1328_junctions parent hoffmanNG167siBaf60aRNAseqView2 on bigDataUrl ES1328_1.sickle.merged.cutadapt.topHat2peStr_mm10.sorted.junctions.bb shortLabel siNT_mESC ES1328 junctions longLabel siNT_mESC ES1328 junctions type bigBed 12 visibility pack priority 1134 scoreMin 10 scoreMax 100 color 141,102,0 subGroups Group1=siNT Group2=mESC view=JUNC # combined junctions track track ES1329_junctions parent hoffmanNG167siBaf60aRNAseqView2 on bigDataUrl ES1329_1.sickle.merged.cutadapt.topHat2peStr_mm10.sorted.junctions.bb shortLabel siNT_mESC ES1329 junctions longLabel siNT_mESC ES1329 junctions type bigBed 12 visibility pack priority 1136 scoreMin 10 scoreMax 100 color 141,102,0 subGroups Group1=siNT Group2=mESC view=JUNC # combined junctions track track siBaf60a_mESC_junctions parent hoffmanNG167siBaf60aRNAseqView2 on bigDataUrl siBaf60a_mESC.TopHat2_mm10.combinedJunctions.named.bb shortLabel siBaf60a_mESC junctions longLabel siBaf60a_mESC junctions type bigBed 12 visibility pack priority 1138 scoreMin 10 scoreMax 100 color 123,31,31 subGroups Group1=siBaf60a Group2=mESC view=JUNC # combined junctions track track siNT_mESC_junctions parent hoffmanNG167siBaf60aRNAseqView2 on bigDataUrl siNT_mESC.TopHat2_mm10.combinedJunctions.named.bb shortLabel siNT_mESC junctions longLabel siNT_mESC junctions type bigBed 12 visibility pack priority 1140 scoreMin 10 scoreMax 100 color 141,102,0 subGroups Group1=siNT Group2=mESC view=JUNC ## Beginning of track view track APAsites compositeTrack on shortLabel APA Sites longLabel APA Sites priority 200 visibility pack type bed 3 configurable on subGroup1 view Views \ PEAK=Sites subGroup2 Group1 Group1 \ data7vs8=data7vs8 subGroup3 Group2 Group2 \ mESC=mESC dimensions dimX=Group1 dimY=Group2 sortOrder Group1=+ Group2=+ view=+ ## Views track for ChIPseq peaks track APAsitesView parent APAsites shortLabel Sites view PEAK visibility pack type bigBed allButtonPair on centerLabelsDense on dragAndDrop on viewUi on # Peak track track charlesAPAdata7vs8 parent APAsitesView on bigDataUrl charlesAPA_data7vs8_mm10_sites.bb shortLabel charles APA sites (data7vs8) longLabel charles APA sites (data7vs8) type bigBed visibility pack priority 208 color 123,31,31 subGroups Group1=data7vs8 Group2=mESC view=PEAK