## Beginning of track view track hoffmanNG167siBaf60aRNAseq compositeTrack on shortLabel hoffmanNG167 siBaf60a RNAseq longLabel hoffmanNG167 siBaf60a RNAseq priority 1100 visibility full type bed 3 configurable on subGroup1 view Views \ COV=Coverage \ JUNC=Junctions subGroup2 Group1 Group1 \ siBaf60a=siBaf60a \ siNT=siNT subGroup3 Group2 Group2 \ mESC=mESC dimensions dimX=Group1 dimY=Group2 sortOrder Group1=+ Group2=+ view=+ ## Views track coverage data track hoffmanNG167siBaf60aRNAseqView1 parent hoffmanNG167siBaf60aRNAseq shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits -20:20 viewUi on ## Coverage track track ES1330_coverage_v1 parent hoffmanNG167siBaf60aRNAseqView1 on shortLabel siBaf60a_mESC ES1330 coverage longLabel siBaf60a_mESC ES1330 coverage container multiWig aggregate transparentOverlay type bigWig color 123,31,31 priority 1102 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits -20:20 visibility hide subGroups Group1=siBaf60a Group2=mESC view=COV showSubtrackColorOnUi on ## Positive strand bigWig track ES1330_coverage_v1_pos parent ES1330_coverage_v1 on bigDataUrl ES1330_1.sickle.merged.cutadapt.topHat2peStr_mm10.slop0.pos.bw type bigWig color 123,31,31 ## Negative strand bigWig track ES1330_coverage_v1_neg parent ES1330_coverage_v1 on bigDataUrl ES1330_1.sickle.merged.cutadapt.topHat2peStr_mm10.slop0.neg.bw type bigWig color 123,31,31 ## Negative strand bigWig ## Coverage track track ES1331_coverage_v1 parent hoffmanNG167siBaf60aRNAseqView1 on shortLabel siBaf60a_mESC ES1331 coverage longLabel siBaf60a_mESC ES1331 coverage type bigWig color 123,31,31 priority 1106 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=siBaf60a Group2=mESC view=COV ## Positive strand bigWig track ES1331_coverage_v1_pos parent ES1331_coverage_v1 on bigDataUrl ES1331_1.sickle.merged.cutadapt.topHat2peStr_mm10.slop0.pos.bw type bigWig color 123,31,31 ## Negative strand bigWig track ES1331_coverage_v1_neg parent ES1331_coverage_v1 on bigDataUrl ES1331_1.sickle.merged.cutadapt.topHat2peStr_mm10.slop0.neg.bw type bigWig color 123,31,31 ## Coverage track track ES1332_coverage_v1 parent hoffmanNG167siBaf60aRNAseqView1 on shortLabel siBaf60a_mESC ES1332 coverage longLabel siBaf60a_mESC ES1332 coverage type bigWig color 123,31,31 priority 1110 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=siBaf60a Group2=mESC view=COV ## Positive strand bigWig track ES1332_coverage_v1_pos parent ES1332_coverage_v1 on bigDataUrl ES1332_1.sickle.merged.cutadapt.topHat2peStr_mm10.slop0.pos.bw type bigWig color 123,31,31 ## Negative strand bigWig track ES1332_coverage_v1_neg parent ES1332_coverage_v1 on bigDataUrl ES1332_1.sickle.merged.cutadapt.topHat2peStr_mm10.slop0.neg.bw type bigWig color 123,31,31 ## Coverage track track ES1327_coverage_v1 parent hoffmanNG167siBaf60aRNAseqView1 on shortLabel siNT_mESC ES1327 coverage longLabel siNT_mESC ES1327 coverage type bigWig color 141,102,0 priority 1114 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=siNT Group2=mESC view=COV ## Positive strand bigWig track ES1327_coverage_v1_pos parent ES1327_coverage_v1 on bigDataUrl ES1327_1.sickle.merged.cutadapt.topHat2peStr_mm10.slop0.pos.bw type bigWig color 141,102,0 ## Negative strand bigWig track ES1327_coverage_v1_neg parent ES1327_coverage_v1 on bigDataUrl ES1327_1.sickle.merged.cutadapt.topHat2peStr_mm10.slop0.neg.bw type bigWig color 141,102,0 ## Coverage track track ES1328_coverage_v1 parent hoffmanNG167siBaf60aRNAseqView1 on shortLabel siNT_mESC ES1328 coverage longLabel siNT_mESC ES1328 coverage type bigWig color 141,102,0 priority 1118 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=siNT Group2=mESC view=COV ## Positive strand bigWig track ES1328_coverage_v1_pos parent ES1328_coverage_v1 on bigDataUrl ES1328_1.sickle.merged.cutadapt.topHat2peStr_mm10.slop0.pos.bw type bigWig color 141,102,0 ## Negative strand bigWig track ES1328_coverage_v1_neg parent ES1328_coverage_v1 on bigDataUrl ES1328_1.sickle.merged.cutadapt.topHat2peStr_mm10.slop0.neg.bw type bigWig color 141,102,0 ## Coverage track track ES1329_coverage_v1 parent hoffmanNG167siBaf60aRNAseqView1 on shortLabel siNT_mESC ES1329 coverage longLabel siNT_mESC ES1329 coverage type bigWig color 141,102,0 priority 1122 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=siNT Group2=mESC view=COV ## Positive strand bigWig track ES1329_coverage_v1_pos parent ES1329_coverage_v1 on bigDataUrl ES1329_1.sickle.merged.cutadapt.topHat2peStr_mm10.slop0.pos.bw type bigWig color 141,102,0 ## Negative strand bigWig track ES1329_coverage_v1_neg parent ES1329_coverage_v1 on bigDataUrl ES1329_1.sickle.merged.cutadapt.topHat2peStr_mm10.slop0.neg.bw type bigWig color 141,102,0 ## Views track for RNAseq, junctions data track hoffmanNG167siBaf60aRNAseqView2 parent hoffmanNG167siBaf60aRNAseq shortLabel RNAseq_junctions view JUNC visibility pack type bigBed 12 allButtonPair on centerLabelsDense on dragAndDrop on thickDrawItem on scoreFilter 20 scoreFilterLimits 1:1000 viewUi on # combined junctions track track ES1330_junctions parent hoffmanNG167siBaf60aRNAseqView2 on bigDataUrl ES1330_1.sickle.merged.cutadapt.topHat2peStr_mm10.sorted.junctions.bb shortLabel siBaf60a_mESC ES1330 junctions longLabel siBaf60a_mESC ES1330 junctions type bigBed 12 visibility pack priority 1126 scoreMin 10 scoreMax 100 color 123,31,31 subGroups Group1=siBaf60a Group2=mESC view=JUNC # combined junctions track track ES1331_junctions parent hoffmanNG167siBaf60aRNAseqView2 on bigDataUrl ES1331_1.sickle.merged.cutadapt.topHat2peStr_mm10.sorted.junctions.bb shortLabel siBaf60a_mESC ES1331 junctions longLabel siBaf60a_mESC ES1331 junctions type bigBed 12 visibility pack priority 1128 scoreMin 10 scoreMax 100 color 123,31,31 subGroups Group1=siBaf60a Group2=mESC view=JUNC # combined junctions track track ES1332_junctions parent hoffmanNG167siBaf60aRNAseqView2 on bigDataUrl ES1332_1.sickle.merged.cutadapt.topHat2peStr_mm10.sorted.junctions.bb shortLabel siBaf60a_mESC ES1332 junctions longLabel siBaf60a_mESC ES1332 junctions type bigBed 12 visibility pack priority 1130 scoreMin 10 scoreMax 100 color 123,31,31 subGroups Group1=siBaf60a Group2=mESC view=JUNC # combined junctions track track ES1327_junctions parent hoffmanNG167siBaf60aRNAseqView2 on bigDataUrl ES1327_1.sickle.merged.cutadapt.topHat2peStr_mm10.sorted.junctions.bb shortLabel siNT_mESC ES1327 junctions longLabel siNT_mESC ES1327 junctions type bigBed 12 visibility pack priority 1132 scoreMin 10 scoreMax 100 color 141,102,0 subGroups Group1=siNT Group2=mESC view=JUNC # combined junctions track track ES1328_junctions parent hoffmanNG167siBaf60aRNAseqView2 on bigDataUrl ES1328_1.sickle.merged.cutadapt.topHat2peStr_mm10.sorted.junctions.bb shortLabel siNT_mESC ES1328 junctions longLabel siNT_mESC ES1328 junctions type bigBed 12 visibility pack priority 1134 scoreMin 10 scoreMax 100 color 141,102,0 subGroups Group1=siNT Group2=mESC view=JUNC # combined junctions track track ES1329_junctions parent hoffmanNG167siBaf60aRNAseqView2 on bigDataUrl ES1329_1.sickle.merged.cutadapt.topHat2peStr_mm10.sorted.junctions.bb shortLabel siNT_mESC ES1329 junctions longLabel siNT_mESC ES1329 junctions type bigBed 12 visibility pack priority 1136 scoreMin 10 scoreMax 100 color 141,102,0 subGroups Group1=siNT Group2=mESC view=JUNC