#################################### ## track set ## hoffman_Brg1KD_Dex_STAR track hoffman_Brg1KD_Dex_STAR superTrack on show shortLabel Hoffman_Brg1KD_Dex longLabel Hoffman_Brg1KD_Dex priority 2140 # ################################## # # Overlay multiple stranded tracks track UE_STAR_coverage superTrack hoffman_Brg1KD_Dex_STAR full container multiWig aggregate stacked shortLabel WT_EtOH STAR coverage longLabel WT_EtOH STAR coverage showSubtrackColorOnUi on type bigWig priority 2143 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full # ################################## # ################################## track UE1_L005_STAR_pos parent UE_STAR_coverage bigDataUrl UE1ES1887-L005.STAR_hg19.pos.bw type bigWig color 255,165,0 priority 1144 # ################################## track UE1_L005_STAR_neg parent UE_STAR_coverage bigDataUrl UE1ES1887-L005.STAR_hg19.neg.bw type bigWig color 255,165,0 priority 1143 # ################################## track UE1_L006_STAR_pos parent UE_STAR_coverage bigDataUrl UE1ES1887-L006.STAR_hg19.pos.bw type bigWig color 255,165,0 priority 1146 # ################################## track UE1_L006_STAR_neg parent UE_STAR_coverage bigDataUrl UE1ES1887-L006.STAR_hg19.neg.bw type bigWig color 255,165,0 priority 1145 # ################################## # ################################## track UE2_L005_STAR_pos parent UE_STAR_coverage bigDataUrl UE2ES1888-L005.STAR_hg19.pos.bw type bigWig color 255,165,0 priority 1144 # ################################## track UE2_L005_STAR_neg parent UE_STAR_coverage bigDataUrl UE2ES1888-L005.STAR_hg19.neg.bw type bigWig color 255,165,0 priority 1143 # ################################## track UE2_L006_STAR_pos parent UE_STAR_coverage bigDataUrl UE2ES1888-L006.STAR_hg19.pos.bw type bigWig color 255,165,0 priority 1146 # ################################## track UE2_L006_STAR_neg parent UE_STAR_coverage bigDataUrl UE2ES1888-L006.STAR_hg19.neg.bw type bigWig color 255,165,0 priority 1145 # ################################## # ################################## track UE3_L005_STAR_pos parent UE_STAR_coverage bigDataUrl UE3ES1889-L005.STAR_hg19.pos.bw type bigWig color 255,165,0 priority 1144 # ################################## track UE3_L005_STAR_neg parent UE_STAR_coverage bigDataUrl UE3ES1889-L005.STAR_hg19.neg.bw type bigWig color 255,165,0 priority 1143 # ################################## track UE3_L006_STAR_pos parent UE_STAR_coverage bigDataUrl UE3ES1889-L006.STAR_hg19.pos.bw type bigWig color 255,165,0 priority 1146 # ################################## track UE3_L006_STAR_neg parent UE_STAR_coverage bigDataUrl UE3ES1889-L006.STAR_hg19.neg.bw type bigWig color 255,165,0 priority 1145 # ################################## # # Overlay multiple stranded tracks track UD_STAR_coverage superTrack hoffman_Brg1KD_Dex_STAR full container multiWig aggregate stacked shortLabel WT_Dex STAR coverage longLabel WT_Dex STAR coverage showSubtrackColorOnUi on type bigWig priority 2153 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full # ################################## # ################################## track UD1_L005_STAR_pos parent UD_STAR_coverage bigDataUrl UD1ES1890-L005.STAR_hg19.pos.bw type bigWig color 0,0,205 priority 1144 # ################################## track UD1_L005_STAR_neg parent UD_STAR_coverage bigDataUrl UD1ES1890-L005.STAR_hg19.neg.bw type bigWig color 0,0,205 priority 1143 # ################################## track UD1_L006_STAR_pos parent UD_STAR_coverage bigDataUrl UD1ES1890-L006.STAR_hg19.pos.bw type bigWig color 0,0,205 priority 1146 # ################################## track UD1_L006_STAR_neg parent UD_STAR_coverage bigDataUrl UD1ES1890-L006.STAR_hg19.neg.bw type bigWig color 0,0,205 priority 1145 # ################################## # ################################## track UD2_L005_STAR_pos parent UD_STAR_coverage bigDataUrl UD2ES1891-L005.STAR_hg19.pos.bw type bigWig color 0,0,205 priority 1144 # ################################## track UD2_L005_STAR_neg parent UD_STAR_coverage bigDataUrl UD2ES1891-L005.STAR_hg19.neg.bw type bigWig color 0,0,205 priority 1143 # ################################## track UD2_L006_STAR_pos parent UD_STAR_coverage bigDataUrl UD2ES1891-L006.STAR_hg19.pos.bw type bigWig color 0,0,205 priority 1146 # ################################## track UD2_L006_STAR_neg parent UD_STAR_coverage bigDataUrl UD2ES1891-L006.STAR_hg19.neg.bw type bigWig color 0,0,205 priority 1145 # ################################## # ################################## track UD3_L005_STAR_pos parent UD_STAR_coverage bigDataUrl UD3ES1892-L005.STAR_hg19.pos.bw type bigWig color 0,0,205 priority 1144 # ################################## track UD3_L005_STAR_neg parent UD_STAR_coverage bigDataUrl UD3ES1892-L005.STAR_hg19.neg.bw type bigWig color 0,0,205 priority 1143 # ################################## track UD3_L006_STAR_pos parent UD_STAR_coverage bigDataUrl UD3ES1892-L006.STAR_hg19.pos.bw type bigWig color 0,0,205 priority 1146 # ################################## track UD3_L006_STAR_neg parent UD_STAR_coverage bigDataUrl UD3ES1892-L006.STAR_hg19.neg.bw type bigWig color 0,0,205 priority 1145 # ################################## # # Overlay multiple stranded tracks track DE_STAR_coverage superTrack hoffman_Brg1KD_Dex_STAR full container multiWig aggregate stacked shortLabel Brg1KD_EtOH STAR coverage longLabel Brg1KD_EtOH STAR coverage showSubtrackColorOnUi on type bigWig priority 2163 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full # ################################## # ################################## track DE1_L005_STAR_pos parent DE_STAR_coverage bigDataUrl DE1ES1893-L005.STAR_hg19.pos.bw type bigWig color 210,105,30 priority 1144 # ################################## track DE1_L005_STAR_neg parent DE_STAR_coverage bigDataUrl DE1ES1893-L005.STAR_hg19.neg.bw type bigWig color 210,105,30 priority 1143 # ################################## track DE1_L006_STAR_pos parent DE_STAR_coverage bigDataUrl DE1ES1893-L006.STAR_hg19.pos.bw type bigWig color 210,105,30 priority 1146 # ################################## track DE1_L006_STAR_neg parent DE_STAR_coverage bigDataUrl DE1ES1893-L006.STAR_hg19.neg.bw type bigWig color 210,105,30 priority 1145 # ################################## # ################################## track DE2_L005_STAR_pos parent DE_STAR_coverage bigDataUrl DE2ES1894-L005.STAR_hg19.pos.bw type bigWig color 210,105,30 priority 1144 # ################################## track DE2_L005_STAR_neg parent DE_STAR_coverage bigDataUrl DE2ES1894-L005.STAR_hg19.neg.bw type bigWig color 210,105,30 priority 1143 # ################################## track DE2_L006_STAR_pos parent DE_STAR_coverage bigDataUrl DE2ES1894-L006.STAR_hg19.pos.bw type bigWig color 210,105,30 priority 1146 # ################################## track DE2_L006_STAR_neg parent DE_STAR_coverage bigDataUrl DE2ES1894-L006.STAR_hg19.neg.bw type bigWig color 210,105,30 priority 1145 # ################################## # ################################## track DE3_L005_STAR_pos parent DE_STAR_coverage bigDataUrl DE3ES1895-L005.STAR_hg19.pos.bw type bigWig color 210,105,30 priority 1144 # ################################## track DE3_L005_STAR_neg parent DE_STAR_coverage bigDataUrl DE3ES1895-L005.STAR_hg19.neg.bw type bigWig color 210,105,30 priority 1143 # ################################## track DE3_L006_STAR_pos parent DE_STAR_coverage bigDataUrl DE3ES1895-L006.STAR_hg19.pos.bw type bigWig color 210,105,30 priority 1146 # ################################## track DE3_L006_STAR_neg parent DE_STAR_coverage bigDataUrl DE3ES1895-L006.STAR_hg19.neg.bw type bigWig color 210,105,30 priority 1145 # ################################## # # Overlay multiple stranded tracks track DD_STAR_coverage superTrack hoffman_Brg1KD_Dex_STAR full container multiWig aggregate stacked shortLabel Brg1KD_Dex STAR coverage longLabel Brg1KD_Dex STAR coverage showSubtrackColorOnUi on type bigWig priority 2173 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full # ################################## # ################################## track DD1_L005_STAR_pos parent DD_STAR_coverage bigDataUrl DD1ES1896-L005.STAR_hg19.pos.bw type bigWig color 139,10,80 priority 1144 # ################################## track DD1_L005_STAR_neg parent DD_STAR_coverage bigDataUrl DD1ES1896-L005.STAR_hg19.neg.bw type bigWig color 139,10,80 priority 1143 # ################################## track DD1_L006_STAR_pos parent DD_STAR_coverage bigDataUrl DD1ES1896-L006.STAR_hg19.pos.bw type bigWig color 139,10,80 priority 1146 # ################################## track DD1_L006_STAR_neg parent DD_STAR_coverage bigDataUrl DD1ES1896-L006.STAR_hg19.neg.bw type bigWig color 139,10,80 priority 1145 # ################################## # ################################## track DD2_L005_STAR_pos parent DD_STAR_coverage bigDataUrl DD2ES1897-L005.STAR_hg19.pos.bw type bigWig color 139,10,80 priority 1144 # ################################## track DD2_L005_STAR_neg parent DD_STAR_coverage bigDataUrl DD2ES1897-L005.STAR_hg19.neg.bw type bigWig color 139,10,80 priority 1143 # ################################## track DD2_L006_STAR_pos parent DD_STAR_coverage bigDataUrl DD2ES1897-L006.STAR_hg19.pos.bw type bigWig color 139,10,80 priority 1146 # ################################## track DD2_L006_STAR_neg parent DD_STAR_coverage bigDataUrl DD2ES1897-L006.STAR_hg19.neg.bw type bigWig color 139,10,80 priority 1145 # ################################## # ################################## track DD3_L005_STAR_pos parent DD_STAR_coverage bigDataUrl DD3ES1898-L005.STAR_hg19.pos.bw type bigWig color 139,10,80 priority 1144 # ################################## track DD3_L005_STAR_neg parent DD_STAR_coverage bigDataUrl DD3ES1898-L005.STAR_hg19.neg.bw type bigWig color 139,10,80 priority 1143 # ################################## track DD3_L006_STAR_pos parent DD_STAR_coverage bigDataUrl DD3ES1898-L006.STAR_hg19.pos.bw type bigWig color 139,10,80 priority 1146 # ################################## track DD3_L006_STAR_neg parent DD_STAR_coverage bigDataUrl DD3ES1898-L006.STAR_hg19.neg.bw type bigWig color 139,10,80 priority 1145 ############################################### ## Beginning of track view track hoffman_Brg1KD_Dex compositeTrack on shortLabel Hoffman RNA-seq Brg1KD Dex longLabel Hoffman RNA-seq Brg1KD Dex priority 2200 visibility full type bed 3 configurable on subGroup1 view Views \ JUNC=Junctions subGroup2 Group1 Group1 \ WT_EtOH=WT_EtOH \ WT_Dex=WT_Dex \ Brg1KD_EtOH=Brg1KD_EtOH \ Brg1KD_Dex=Brg1KD_Dex sortOrder Group1=+ view=+ ## Views track for RNAseq, junctions data track hoffman_Brg1KD_Dex_junctions parent hoffman_Brg1KD_Dex shortLabel RNAseq_junctions view JUNC visibility pack type bigBed 12 allButtonPair on centerLabelsDense on dragAndDrop on thickDrawItem on scoreFilter 10 scoreFilterLimits 1:1000 viewUi on # combined junctions track track UE_junctions parent hoffman_Brg1KD_Dex_junctions on bigDataUrl hoffmanJunctions_UE_11oct2017.bb shortLabel WT_EtOH junctions longLabel WT_EtOH junctions type bigBed 12 visibility pack priority 2208 scoreMin 10 scoreMax 100 color 255,165,0 subGroups Group1=WT_EtOH view=JUNC # combined junctions track track UD_junctions parent hoffman_Brg1KD_Dex_junctions on bigDataUrl hoffmanJunctions_UD_11oct2017.bb shortLabel WT_Dex junctions longLabel WT_Dex junctions type bigBed 12 visibility pack priority 2209 scoreMin 10 scoreMax 100 color 0,0,205 subGroups Group1=WT_Dex view=JUNC # combined junctions track track DE_junctions parent hoffman_Brg1KD_Dex_junctions on bigDataUrl hoffmanJunctions_DE_11oct2017.bb shortLabel Brg1KD_EtOH junctions longLabel Brg1KD_EtOH junctions type bigBed 12 visibility pack priority 2210 scoreMin 10 scoreMax 100 color 210,105,30 subGroups Group1=Brg1KD_EtOH view=JUNC # combined junctions track track DD_junctions parent hoffman_Brg1KD_Dex_junctions on bigDataUrl hoffmanJunctions_DD_11oct2017.bb shortLabel Brg1KD_Dex junctions longLabel Brg1KD_Dex junctions type bigBed 12 visibility pack priority 2211 scoreMin 10 scoreMax 100 color 139,10,80 subGroups Group1=Brg1KD_Dex view=JUNC