## Beginning of track view
track             BAF47KD_peaks
compositeTrack    on
shortLabel        BAF47KD_NFR_peaks
longLabel         BAF47KD_NFR_peaks
priority          1400
visibility        full
type              bed 3
configurable	  on
subGroup1         view Views \
   COV=Coverage \
   REGIONS=Regions
subGroup2         Group1 Group1 \
    Untreated=Untreated
 subGroup3         Group2 Group2 \
     Day_2=Day_2 \
 subGroup4         Group3 Group3 \
     Day_3=Day_3 \

dimensions        dimX=Group1 #dimY=Group2
sortOrder         Group1=+ view=+
sortOrder         Group2=+  view=+
sortOrder         Group3=+  view=+

   ## Views track coverage data
   track             BAF47KD
   parent            BAF47KD_peaks
   shortLabel        Coverage
   view              COV
   visibility        full
   type              bigWig
   allButtonPair     on
   centerLabelsDense on
   dragAndDrop       on
   alwaysZero        on
   graphTypeDefault  bar
   maxHeightPixels   100:60:8
   smoothingWindow   2
   transformFunc     NONE
   windowingFunction mean+whiskers
   gridDefault       on
   viewLimits        0:100
   viewUi            on


      ## Coverage track
      track             BAF47_peaks_untreated_gtr5
      parent            BAF47KD on
      bigDataUrl        ./BAF47KD_ATAC_bwigs/BAF47_KD_Day0_NFR_peaks_replicate_intersection_enrich_gtr5.highdepth_rem.bb
      shortLabel        Untreated_peaks_gtr5
      longLabel         Untreated_peaks_gtr5
      type              bigBed
      color             138,138,59
      priority          1413
      alwaysZero        on
      graphTypeDefault  bar
      maxHeightPixels   100:60:8
      smoothingWindow   2
      transformFunc     NONE
      windowingFunction mean+whiskers
      gridDefault	on
      viewLimits        0:10
      visibility        full
      subGroups         Group1=Untreated view=COV


      ## Coverage track
      track             BAF47KD_peaks_D2_gtr5
      parent            BAF47KD on
      bigDataUrl        ./BAF47KD_ATAC_bwigs/BAF47_KD_Day2_NFR_peaks_replicate_intersection_enrich_gtr5.highdepth_rem.bb
      shortLabel        BAF47KD Day_2_peaks_gtr5
      longLabel         BAF47KD Day_2_peaks_gtr5
      type              bigBed
      color             208,50,60
      priority          1415
      alwaysZero        on
      graphTypeDefault  bar
      maxHeightPixels   100:60:8
      smoothingWindow   2
      transformFunc     NONE
      windowingFunction mean+whiskers
      gridDefault	on
      viewLimits        0:10
      visibility        full
      subGroups         Group2=Day_2 view=COV
      
            ## Coverage track
      track             BAF47KD_peaks_D3_gtr5
      parent            BAF47KD on
      bigDataUrl        ./BAF47KD_ATAC_bwigs/BAF47_KD_Day3_NFR_peaks_replicate_intersection_enrich_gtr5.highdepth_rem.bb
      shortLabel        BAF47KD Day_3_peaks_gtr5
      longLabel         BAF47KD Day_3_peaks_gtr5
      type              bigBed
      color             56,148,66
      priority          1417
      alwaysZero        on
      graphTypeDefault  bar
      maxHeightPixels   100:60:8
      smoothingWindow   2
      transformFunc     NONE
      windowingFunction mean+whiskers
      gridDefault	on
      viewLimits        0:10
      visibility        full
      subGroups         Group3=Day_3 view=COV