## Beginning of track view
track             BAF47KD_neural_ind_peaks
compositeTrack    on
shortLabel        BAF47KD_NFR_NI_peaks
longLabel         BAF47KD_NFR_NI_peaks
priority          2600
visibility        full
type              bed 3
configurable	  on
subGroup1         view Views \
   COV=Coverage \
   REGIONS=Regions
subGroup2         Group1 Group1 \
    Untreated_Day3=Untreated_Day3
 subGroup3         Group2 Group2 \
     BAF47KD_Day3=BAF47KD_Day3 \
 subGroup4         Group3 Group3 \
     Untreated_Day6=Untreated_Day6 \
 subGroup5         Group3 Group3 \
     BAF47KD_Day6=BAF47KD_Day6 \


dimensions        dimX=Group1 #dimY=Group2
sortOrder         Group1=+ view=+
sortOrder         Group2=+  view=+
sortOrder         Group3=+  view=+

   ## Views track coverage data
   track             BAF47KD_neural_ind
   parent            BAF47KD_neural_ind_peaks
   shortLabel        Coverage
   view              COV
   visibility        full
   type              bigWig
   allButtonPair     on
   centerLabelsDense on
   dragAndDrop       on
   alwaysZero        on
   graphTypeDefault  bar
   maxHeightPixels   100:60:8
   smoothingWindow   2
   transformFunc     NONE
   windowingFunction mean+whiskers
   gridDefault       on
   viewLimits        0:100
   viewUi            on


      ## Coverage track
      track             Day3_unt_peaks
      parent            BAF47KD_neural_ind on
      bigDataUrl        ./BAF47KD_Neural_induction_bwigs/Peak_files/BAF47KD_neural_ind_unt_Day3_peaks_high_depth_rem_rep1_2_intersect.bb
      shortLabel        Untreated_Day3
      longLabel         Untreated_Day3
      type              bigBed
      color             84,239,67
      priority          2613
      alwaysZero        on
      graphTypeDefault  bar
      maxHeightPixels   100:60:8
      smoothingWindow   2
      transformFunc     NONE
      windowingFunction mean+whiskers
      gridDefault	on
      viewLimits        0:10
      visibility        full
      subGroups         Group1=Untreated_Day3 view=COV


      ## Coverage track
      track             Day3_plusdox_peaks
      parent            BAF47KD_neural_ind on
      bigDataUrl        ./BAF47KD_Neural_induction_bwigs/Peak_files/BAF47KD_neural_ind_plusdox_Day3_peaks_high_depth_rem_rep1_2_intersect.bb
      shortLabel        BAF47KD_Day_3
      longLabel         BAF47KD_Day_3
      type              bigBed
      color             153,122,249
      priority          2615
      alwaysZero        on
      graphTypeDefault  bar
      maxHeightPixels   100:60:8
      smoothingWindow   2
      transformFunc     NONE
      windowingFunction mean+whiskers
      gridDefault	on
      viewLimits        0:10
      visibility        full
      subGroups         Group2=BAF47KD_Day3 view=COV
      
      ## Coverage track
      track             Day6_unt_peaks
      parent            BAF47KD_neural_ind on
      bigDataUrl        ./BAF47KD_Neural_induction_bwigs/Peak_files/BAF47KD_neural_ind_unt_Day6_peaks_high_depth_rem_rep1_2_intersect.bb
      shortLabel        Untreated_Day6
      longLabel         Untreated_Day6
      type              bigBed
      color             18,119,234
      priority          2613
      alwaysZero        on
      graphTypeDefault  bar
      maxHeightPixels   100:60:8
      smoothingWindow   2
      transformFunc     NONE
      windowingFunction mean+whiskers
      gridDefault	on
      viewLimits        0:10
      visibility        full
      subGroups         Group3=Untreated_Day6 view=COV


      ## Coverage track
      track             Day6_plusdox_peaks
      parent            BAF47KD_neural_ind on
      bigDataUrl        ./BAF47KD_Neural_induction_bwigs/Peak_files/BAF47KD_neural_ind_plusdox_Day6_peaks_high_depth_rem_rep1_2_intersect.bb
      shortLabel        BAF47KD_Day_6
      longLabel         BAF47KD_Day_6
      type              bigBed
      color             249,54,54
      priority          2615
      alwaysZero        on
      graphTypeDefault  bar
      maxHeightPixels   100:60:8
      smoothingWindow   2
      transformFunc     NONE
      windowingFunction mean+whiskers
      gridDefault	on
      viewLimits        0:10
      visibility        full
      subGroups         Group4=BAF47KD_Day6 view=COV