## Beginning of track view track exampleTrackSet compositeTrack on shortLabel exampleTrackSet longLabel exampleTrackSet priority 200 visibility full type bed 3 configurable on subGroup1 view Views \ COV=Coverage \ PEAK=Peaks \ JUNC=Junctions subGroup2 Group1 Group1 \ WildType=WildType \ Brg1KO=Brg1KO subGroup3 Group2 Group2 \ MCF7=MCF7 dimensions dimX=Group1 dimY=Group2 sortOrder Group1=+ Group2=+ view=+ ## Views track coverage data track exampleTrackSetView1 parent exampleTrackSet shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 viewUi on ## Coverage track track SAMPLEONE_coverage parent exampleTrackSetView1 on bigDataUrl SAMPLEONE_1.sickle.merged.cutadapt.topHat2peStr_mm10.bw shortLabel WildType_MCF7 SAMPLEONE coverage longLabel WildType_MCF7 SAMPLEONE coverage type bigWig color 139,101,8 priority 202 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=WildType Group2=MCF7 view=COV ## Coverage track track SAMPLETWO_coverage parent exampleTrackSetView1 on bigDataUrl SAMPLETWO_1.sickle.merged.cutadapt.topHat2peStr_mm10.bw shortLabel WildType_MCF7 SAMPLETWO coverage longLabel WildType_MCF7 SAMPLETWO coverage type bigWig color 139,101,8 priority 204 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=WildType Group2=MCF7 view=COV ## Coverage track track SAMPLETHREE_coverage parent exampleTrackSetView1 on bigDataUrl SAMPLETHREE_1.sickle.merged.cutadapt.topHat2peStr_mm10.bw shortLabel WildType_MCF7 SAMPLETHREE coverage longLabel WildType_MCF7 SAMPLETHREE coverage type bigWig color 139,101,8 priority 206 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=WildType Group2=MCF7 view=COV ## Coverage track track SAMPLEFOUR_coverage parent exampleTrackSetView1 on bigDataUrl SAMPLEFOUR_1.sickle.merged.cutadapt.topHat2peStr_mm10.bw shortLabel Brg1KO_MCF7 SAMPLEFOUR coverage longLabel Brg1KO_MCF7 SAMPLEFOUR coverage type bigWig color 139,0,0 priority 208 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Brg1KO Group2=MCF7 view=COV ## Coverage track track SAMPLEFIVE_coverage parent exampleTrackSetView1 on bigDataUrl SAMPLEFIVE_1.sickle.merged.cutadapt.topHat2peStr_mm10.bw shortLabel Brg1KO_MCF7 SAMPLEFIVE coverage longLabel Brg1KO_MCF7 SAMPLEFIVE coverage type bigWig color 139,0,0 priority 210 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Brg1KO Group2=MCF7 view=COV ## Coverage track track SAMPLESIX_coverage parent exampleTrackSetView1 on bigDataUrl SAMPLESIX_1.sickle.merged.cutadapt.topHat2peStr_mm10.bw shortLabel Brg1KO_MCF7 SAMPLESIX coverage longLabel Brg1KO_MCF7 SAMPLESIX coverage type bigWig color 139,0,0 priority 212 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Brg1KO Group2=MCF7 view=COV ## Views track for RNAseq, junctions data track exampleTrackSetView2 parent exampleTrackSet shortLabel RNAseq_junctions view JUNC visibility pack type bigBed 12 allButtonPair on centerLabelsDense on dragAndDrop on thickDrawItem on scoreFilter 20 scoreFilterLimits 1:1000 viewUi on # combined junctions track track WildType_MCF7_junctions parent exampleTrackSetView2 on bigDataUrl WildType_MCF7.TopHat2_mm10.combinedJunctions.bb shortLabel WildType_MCF7 junctions longLabel WildType_MCF7 junctions type bigBed 12 visibility pack priority 214 scoreMin 10 scoreMax 100 color 139,101,8 subGroups Group1=WildType Group2=MCF7 view=JUNC # combined junctions track track Brg1KO_MCF7_junctions parent exampleTrackSetView2 on bigDataUrl Brg1KO_MCF7.TopHat2_mm10.combinedJunctions.bb shortLabel Brg1KO_MCF7 junctions longLabel Brg1KO_MCF7 junctions type bigBed 12 visibility pack priority 216 scoreMin 10 scoreMax 100 color 139,0,0 subGroups Group1=Brg1KO Group2=MCF7 view=JUNC