## Beginning of track view
track             shRNA_eval
compositeTrack    on
shortLabel        shRNA_RNAseq_evaluation
longLabel         shRNA_RNAseq_evaluation
priority          1500
visibility        full
type              bed 3
configurable      on
subGroup1         view Views \
   COV=Coverage \
   REGIONS=Regions
   
subGroup2         Group1 Group1 \ 
	NTCD0=NTCD0
	
	
dimensions        dimX=Group1 #dimY=Group2
sortOrder         Group1=+ view=+ 

   ## Views track coverage data
 ##  track             shRNAseq_coverage
   ##parent            shRNA_eval
 ##  shortLabel        Coverage
   ##view              COV
   ##visibility        full
   ##type              bigWig
   ##allButtonPair     on
   ##centerLabelsDense on
   ##dragAndDrop       on
   ##alwaysZero        on
   ##graphTypeDefault  bar
   ##maxHeightPixels   100:60:8
   ##smoothingWindow   2
   ##transformFunc     NONE
   ##windowingFunction mean+whiskers
   ##gridDefault       on
   ##viewLimits        0:100
   ##viewUi            on

   Views track coverage data
   track             shRNAseq_coverage
   parent            shRNA_eval
   shortLabel        Coverage
   view              COV
   visibility        full
   type              bigWig 0 30000
   allButtonPair     on
   centerLabelsDense on
   aggregate transparentOverlay
   dragAndDrop       on
   alwaysZero        on
   graphTypeDefault  bar
   maxHeightPixels   100:60:8
   smoothingWindow   2
   transformFunc     NONE
   windowingFunction mean+whiskers
   gridDefault       on
   viewLimits        0:100
   viewUi            on

   
     ## Coverage track
      track             NTC_Day0
      parent            shRNAseq_coverage
      bigDataUrl        ./shRNA_bws_11_7_16/NTCDay0-1.STAR_hg19.neg.bw
      shortLabel        NTC Day 0
      longLabel         NTC Day 0
      type              bigWig
      color             123,31,31
      priority          1405
      alwaysZero        on
      graphTypeDefault  bar
      maxHeightPixels   100:60:8
      smoothingWindow   2
      transformFunc     NONE
      windowingFunction mean+whiskers
      gridDefault       on
      autoscale	        on
      visibility        full
      subGroups         Group1=NTCD0 view=COV