#################################### ## track set ## StSt_NI_BAF47KD_normalized track StSt_NI_BAF47KD_normalized superTrack on show shortLabel StSt_NI_BAF47KD_normalized longLabel StSt_NI_BAF47KD_normalized priority 1100 # ################################## # # Overlay multiple stranded tracks track 367D0_stranded superTrack StSt_NI_BAF47KD_normalized full container multiWig aggregate transparentOverlay shortLabel BAF47_KD D0 stranded longLabel BAF47_KD D0 stranded showSubtrackColorOnUi on type bigWig priority 1101 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full # ####################### ########### track 367D0_pos_1 parent 367D0_stranded bigDataUrl ./RNAseq_norm_bws_1_12_18/694_unt_1.STAR_hg19.pos_re_normalized_1_12_18.bw type bigWig color 91,77,28 priority 1102 # ################################## track 367D0_neg_1 parent 367D0_stranded bigDataUrl ./RNAseq_norm_bws_1_12_18/694_unt_1.STAR_hg19.neg_re_normalized_1_12_18.bw type bigWig color 91,77,28 priority 1101 # ################################## track 367D0_pos_2 parent 367D0_stranded bigDataUrl ./RNAseq_norm_bws_1_12_18/694_unt_2.STAR_hg19.pos_re_normalized_1_12_18.bw type bigWig color 145,123,45 priority 1100 # ################################## track 367D0_neg_2 parent 367D0_stranded bigDataUrl ./RNAseq_norm_bws_1_12_18/694_unt_2.STAR_hg19.neg_re_normalized_1_12_18.bw type bigWig color 145,123,45 priority 1099 # ################################## track 367D0_pos_3 parent 367D0_stranded bigDataUrl ./RNAseq_norm_bws_1_12_18/694_unt_3.STAR_hg19.pos_re_normalized_1_12_18.bw type bigWig color 239,186,0 priority 1100 # ################################## track 367D0_neg_3 parent 367D0_stranded bigDataUrl ./RNAseq_norm_bws_1_12_18/694_unt_3.STAR_hg19.neg_re_normalized_1_12_18.bw type bigWig color 239,186,0 priority 1099 # ################################## # # Overlay multiple stranded tracks track 367D3_stranded superTrack StSt_NI_BAF47KD_normalized full container multiWig aggregate transparentOverlay shortLabel BAF47_KD D3 stranded longLabel BAF47_KD D3 stranded showSubtrackColorOnUi on type bigWig priority 1101 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full # ####################### ########### track 367D3_pos_1 parent 367D3_stranded bigDataUrl ./RNAseq_norm_bws_1_12_18/694_Day3_dox_1.STAR_hg19.pos_re_normalized_1_12_18.bw type bigWig color 17,224,0 priority 1102 # ################################## track 367D3_neg_1 parent 367D3_stranded bigDataUrl ./RNAseq_norm_bws_1_12_18/694_Day3_dox_1.STAR_hg19.neg_re_normalized_1_12_18.bw type bigWig color 17,224,0 priority 1101 # ################################## track 367D3_pos_2 parent 367D3_stranded bigDataUrl ./RNAseq_norm_bws_1_12_18/694_Day3_dox_2.STAR_hg19.pos_re_normalized_1_12_18.bw type bigWig color 14,170,1 priority 1100 # ################################## track 367D3_neg_2 parent 367D3_stranded bigDataUrl ./RNAseq_norm_bws_1_12_18/694_Day3_dox_2.STAR_hg19.neg_re_normalized_1_12_18.bw type bigWig color 14,170,1 priority 1099 # ################################## track 367D3_pos_3 parent 367D3_stranded bigDataUrl ./RNAseq_norm_bws_1_12_18/694_Day3_dox_3.STAR_hg19.pos_re_normalized_1_12_18.bw type bigWig color 1,198,107 priority 1100 # ################################## track 367D3_neg_3 parent 367D3_stranded bigDataUrl ./RNAseq_norm_bws_1_12_18/694_Day3_dox_3.STAR_hg19.pos_re_normalized_1_12_18.bw type bigWig color 1,198,107 priority 1099 # ################################## # # Overlay multiple stranded tracks track BAF47KD_NI_unt_stranded superTrack StSt_NI_BAF47KD_normalized full container multiWig aggregate transparentOverlay shortLabel BAF47KD_NI_unt_stranded longLabel BAF47KD_NI_unt_stranded showSubtrackColorOnUi on type bigWig priority 1101 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full # ####################### ########### track BAF47KD_NI_unt_pos_1 parent BAF47KD_NI_unt_stranded bigDataUrl ./RNAseq_norm_bws_1_12_18/694_Day6_NI_unt_1.STAR_hg19.pos_re_normalized_1_12_18.bw type bigWig color 0,232,232 priority 1113 # ################################## track BAF47KD_NI_unt_neg_1 parent BAF47KD_NI_unt_stranded bigDataUrl ./RNAseq_norm_bws_1_12_18/694_Day6_NI_unt_1.STAR_hg19.neg_re_normalized_1_12_18.bw type bigWig color 0,232,232 priority 1112 # ################################## track BAF47KD_NI_unt_pos_2 parent BAF47KD_NI_unt_stranded bigDataUrl ./RNAseq_norm_bws_1_12_18/694_Day6_NI_unt_2.STAR_hg19.pos_re_normalized_1_12_18.bw type bigWig color 38,155,155 priority 1111 # ################################## track BAF47KD_NI_unt_neg_2 parent BAF47KD_NI_unt_stranded bigDataUrl ./RNAseq_norm_bws_1_12_18/694_Day6_NI_unt_2.STAR_hg19.neg_re_normalized_1_12_18.bw type bigWig color 38,155,155 priority 1110 # ################################## # # Overlay multiple stranded tracks track BAF47KD_NI_dox_stranded superTrack StSt_NI_BAF47KD_normalized full container multiWig aggregate transparentOverlay shortLabel BAF47KD_NI_dox_stranded longLabel BAF47KD_NI_dox_stranded showSubtrackColorOnUi on type bigWig priority 1101 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full # ####################### ########### track BAF47KD_NI_dox_pos_1 parent BAF47KD_NI_dox_stranded bigDataUrl ./RNAseq_norm_bws_1_12_18/694_Day6_NI_dox_1.STAR_hg19.pos_re_normalized_1_12_18.bw type bigWig color 224,62,62 priority 1114 # ################################## track BAF47KD_NI_dox_neg_1 parent BAF47KD_NI_dox_stranded bigDataUrl ./RNAseq_norm_bws_1_12_18/694_Day6_NI_dox_1.STAR_hg19.neg_re_normalized_1_12_18.bw type bigWig color 224,62,62 priority 1115 # ################################## track BAF47KD_NI_dox_pos_2 parent BAF47KD_NI_dox_stranded bigDataUrl ./RNAseq_norm_bws_1_12_18/694_Day6_NI_dox_2.STAR_hg19.pos_re_normalized_1_12_18.bw type bigWig color 232,34,34 priority 1116 # ################################## track BAF47KD_NI_dox_neg_2 parent BAF47KD_NI_dox_stranded bigDataUrl ./RNAseq_norm_bws_1_12_18/694_Day6_NI_dox_2.STAR_hg19.neg_re_normalized_1_12_18.bw type bigWig color 232,34,34 priority 1117 #################################### ## track set ## ATAC-seq_NFR track BAF47KD_ATACseq_NFR superTrack on show shortLabel BAF47KD_ATACseq_NFR longLabel BAF47KD_ATACseq_NFR priority 1100 # ################################## # # Overlay multiple stranded tracks track Greenleaf_CSK_H1_NFR superTrack BAF47KD_ATACseq_NFR full container multiWig aggregate transparentOverlay shortLabel Greenleaf_CSK_NFR longLabel Greenleaf_CSK_NFR showSubtrackColorOnUi on type bigWig priority 1101 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full # ####################### ########### track Greenleaf parent Greenleaf_CSK_H1_NFR bigDataUrl ./BAF47KD_ATAC_bwigs/NS50315_H1_Greenleaf_5uL_1.sickle.sanger.cutadapt.hg19_uniq_NFR.possort.dedupe.bs10_1xGenCov.bigWig type bigWig color 146,40,40 priority 1102 ################################## track CSK parent Greenleaf_CSK_H1_NFR bigDataUrl ./BAF47KD_ATAC_bwigs/NS50316_H1_CSK_5uL_1.sickle.sanger.cutadapt.hg19_uniq_NFR.possort.dedupe.bs10_1xGenCov.bigWig type bigWig color 120,43,83 priority 1101 #2 ################################## # # Overlay multiple stranded tracks track BAF47_shRNA_unt_NFR superTrack BAF47KD_ATACseq_NFR full container multiWig aggregate transparentOverlay shortLabel BAF47_shRNA_unt_NFR longLabel BAF47_shRNA_unt_NFR showSubtrackColorOnUi on type bigWig priority 1101 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full # ####################### ########### track Unt_Rep1_NFR parent BAF47_shRNA_unt_NFR bigDataUrl ./ATACseq_norm_bws_1_12_18/NS50453_BAF47KD_Langer_Day0_rep1_1_norm_1_12_18.bw type bigWig color 138,138,59 priority 1102 ################################## track Unt_Rep2_NFR parent BAF47_shRNA_unt_NFR bigDataUrl ./ATACseq_norm_bws_1_12_18/NS50453_BAF47KD_Langer_Day0_rep2_1_norm_1_12_18.bw type bigWig color 108,108,59 priority 1101 #3 ################################## # # Overlay multiple stranded tracks track BAF47_shRNA_D2_NFR superTrack BAF47KD_ATACseq_NFR full container multiWig aggregate transparentOverlay shortLabel BAF47_shRNA_D2_NFR longLabel BAF47_shRNA_D2_NFR showSubtrackColorOnUi on type bigWig priority 1101 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full #3 ####################### ########### track Day2_Rep1_NFR parent BAF47_shRNA_D2_NFR bigDataUrl ./ATACseq_norm_bws_1_12_18/NS50453_BAF47KD_Langer_Day2_rep1_1_norm_1_12_18.bw type bigWig color 208,50,60 priority 1102 #3################################# track Day2_Rep2_NFR parent BAF47_shRNA_D2_NFR bigDataUrl ./ATACseq_norm_bws_1_12_18/NS50453_BAF47KD_Langer_Day2_rep2_1_norm_1_12_18.bw type bigWig color 180,50,60 priority 1101 #4 ################################## # # Overlay multiple stranded tracks track BAF47_shRNA_D3_NFR superTrack BAF47KD_ATACseq_NFR full container multiWig aggregate transparentOverlay shortLabel BAF47_shRNA_D3_NFR longLabel BAF47_shRNA_D3_NFR showSubtrackColorOnUi on type bigWig priority 1101 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full #4 ####################### ########### track Day3_Rep1_NFR parent BAF47_shRNA_D3_NFR bigDataUrl ./ATACseq_norm_bws_1_12_18/NS50453_BAF47KD_Langer_Day3_rep1_1_norm_1_12_18.bw type bigWig color 56,148,66 priority 1102 #4################################# track Day3_Rep2_NFR parent BAF47_shRNA_D3_NFR bigDataUrl ./ATACseq_norm_bws_1_12_18/NS50453_BAF47KD_Langer_Day3_rep2_1_norm_1_12_18.bw type bigWig color 56,255,66 priority 1101 ## Views track coverage data # track ATACseq_coverage # parent ATACseq_eval # shortLabel Coverage #view COV # visibility full # type bigWig # allButtonPair on #centerLabelsDense on # dragAndDrop on # alwaysZero on # graphTypeDefault bar #maxHeightPixels 100:60:8 # smoothingWindow 2 # transformFunc NONE #windowingFunction mean+whiskers # gridDefault on # viewLimits 0:100 # viewUi on ## Beginning of track view track BAF47KD_peaks compositeTrack on shortLabel BAF47KD_NFR_peaks longLabel BAF47KD_NFR_peaks priority 1400 visibility full type bed 3 configurable on subGroup1 view Views \ COV=Coverage \ REGIONS=Regions subGroup2 Group1 Group1 \ Untreated=Untreated subGroup3 Group2 Group2 \ Day_2=Day_2 \ subGroup4 Group3 Group3 \ Day_3=Day_3 \ dimensions dimX=Group1 #dimY=Group2 sortOrder Group1=+ view=+ sortOrder Group2=+ view=+ sortOrder Group3=+ view=+ ## Views track coverage data track BAF47KD parent BAF47KD_peaks shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:100 viewUi on ## Coverage track track BAF47_peaks_untreated_gtr5 parent BAF47KD on bigDataUrl ./BAF47KD_ATAC_bwigs/BAF47_KD_Day0_NFR_peaks_replicate_intersection_enrich_gtr5.highdepth_rem.bb shortLabel Untreated_peaks_gtr5 longLabel Untreated_peaks_gtr5 type bigBed color 138,138,59 priority 1413 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:10 visibility full subGroups Group1=Untreated view=COV ## Coverage track track BAF47KD_peaks_D2_gtr5 parent BAF47KD on bigDataUrl ./BAF47KD_ATAC_bwigs/BAF47_KD_Day2_NFR_peaks_replicate_intersection_enrich_gtr5.highdepth_rem.bb shortLabel BAF47KD Day_2_peaks_gtr5 longLabel BAF47KD Day_2_peaks_gtr5 type bigBed color 208,50,60 priority 1415 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:10 visibility full subGroups Group2=Day_2 view=COV ## Coverage track track BAF47KD_peaks_D3_gtr5 parent BAF47KD on bigDataUrl ./BAF47KD_ATAC_bwigs/BAF47_KD_Day3_NFR_peaks_replicate_intersection_enrich_gtr5.highdepth_rem.bb shortLabel BAF47KD Day_3_peaks_gtr5 longLabel BAF47KD Day_3_peaks_gtr5 type bigBed color 56,148,66 priority 1417 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:10 visibility full subGroups Group3=Day_3 view=COV #################################### ## track set ## ATAC-seq_NFR track BRG1KD_ATAC_NFR superTrack on show shortLabel BRG1KD_ATAC_NFR longLabel BRG1KD_ATAC_NFR priority 1100 #2 ################################## # # Overlay multiple stranded tracks track BRG1KD_shRNA_unt_NFR superTrack BRG1KD_ATAC_NFR full container multiWig aggregate transparentOverlay shortLabel BRG1KD_shRNA_unt_NFR longLabel BRG1KD_shRNA_unt_NFR showSubtrackColorOnUi on type bigWig priority 1101 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full # ####################### ########### track Unt_Rep1_NFR_BRG1_KD parent BRG1KD_shRNA_unt_NFR bigDataUrl ./BRG1KD_ATAC_bwigs/BRG1_KD_NFR_signal/NS50490_BRG1-KD_Day0_rep1_1.sickle.sanger.cutadapt.hg19_uniq_NFR.possort.dedupe.bs10_1xGenCov.bigWig type bigWig color 253,200,159 priority 1102 ################################## track Unt_Rep2_NFR_BRG1_KD parent BRG1KD_shRNA_unt_NFR bigDataUrl ./BRG1KD_ATAC_bwigs/BRG1_KD_NFR_signal/NS50490_BRG1-KD_Day0_rep2_1.sickle.sanger.cutadapt.hg19_uniq_NFR.possort.dedupe.bs10_1xGenCov.bigWig type bigWig color 253,200,59 priority 1101 #3 ################################## # # Overlay multiple stranded tracks track BRG1KD_shRNA_D2_NFR superTrack BRG1KD_ATAC_NFR full container multiWig aggregate transparentOverlay shortLabel BRG1KD_shRNA_D2_NFR longLabel BRG1KD_shRNA_D2_NFR showSubtrackColorOnUi on type bigWig priority 1101 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full #3 ####################### ########### track Day2_Rep1_NFR_BRG1_KD parent BRG1KD_shRNA_D2_NFR bigDataUrl ./BRG1KD_ATAC_bwigs/BRG1_KD_NFR_signal/NS50490_BRG1-KD_Day2_rep1_1.sickle.sanger.cutadapt.hg19_uniq_NFR.possort.dedupe.bs10_1xGenCov.bigWig type bigWig color 5,125,15 priority 1102 #3################################# track Day2_Rep2_NFR_BRG1_KD parent BRG1KD_shRNA_D2_NFR bigDataUrl ./BRG1KD_ATAC_bwigs/BRG1_KD_NFR_signal/NS50490_BRG1-KD_Day2_rep2_1.sickle.sanger.cutadapt.hg19_uniq_NFR.possort.dedupe.bs10_1xGenCov.bigWig type bigWig color 55,25,150 priority 1101 #4 ################################## # # Overlay multiple stranded tracks track BRG1KD_shRNA_D3_NFR superTrack BRG1KD_ATAC_NFR full container multiWig aggregate transparentOverlay shortLabel BRG1KD_shRNA_D3_NFR longLabel BRG1KD_shRNA_D3_NFR showSubtrackColorOnUi on type bigWig priority 1101 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full #4 ####################### ########### track Day3_Rep1_NFR_BRG1_KD parent BRG1KD_shRNA_D3_NFR bigDataUrl ./BRG1KD_ATAC_bwigs/BRG1_KD_NFR_signal/NS50490_BRG1-KD_Day3_rep1_1.sickle.sanger.cutadapt.hg19_uniq_NFR.possort.dedupe.bs10_1xGenCov.bigWig type bigWig color 255,148,66 priority 1102 #4################################# track Day3_Rep2_NFR_BRG1_KD parent BRG1KD_shRNA_D3_NFR bigDataUrl ./BRG1KD_ATAC_bwigs/BRG1_KD_NFR_signal/NS50490_BRG1-KD_Day3_rep2_1.sickle.sanger.cutadapt.hg19_uniq_NFR.possort.dedupe.bs10_1xGenCov.bigWig type bigWig color 255,148,66 priority 1101 ## Beginning of track view track BRG1KD_peaks compositeTrack on shortLabel BRG1KD_NFR_peaks longLabel BRG1KD_NFR_peaks priority 1400 visibility full type bed 3 configurable on subGroup1 view Views \ COV=Coverage \ REGIONS=Regions subGroup2 Group1 Group1 \ Untreated=Untreated subGroup3 Group2 Group2 \ Day_2=Day_2 \ subGroup4 Group3 Group3 \ Day_3=Day_3 \ dimensions dimX=Group1 #dimY=Group2 sortOrder Group1=+ view=+ sortOrder Group2=+ view=+ sortOrder Group3=+ view=+ ## Views track coverage data track BRG1KD parent BRG1KD_peaks shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:100 viewUi on ## Coverage track track BRG1_peaks_untreated_gtr5 parent BRG1KD on bigDataUrl ./BRG1KD_ATAC_bwigs/BRG1_KD_NFR_peaks/BRG1KD_Day0_NFR_peaks_replicate_intersection_enrich_gtr5.highdepth_rem.bb shortLabel Untreated_peaks_gtr5 longLabel Untreated_peaks_gtr5 type bigBed color 200,125,67 priority 1513 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:10 visibility full subGroups Group1=Untreated view=COV ## Coverage track track BRG1KD_peaks_D2_gtr5 parent BRG1KD on bigDataUrl ./BRG1KD_ATAC_bwigs/BRG1_KD_NFR_peaks/BRG1KD_Day2_NFR_peaks_replicate_intersection_enrich_gtr5.highdepth_rem.bb shortLabel BRG1KD Day_2_peaks_gtr5 longLabel BRG1KD Day_2_peaks_gtr5 type bigBed color 5,125,15 priority 1515 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:10 visibility full subGroups Group2=Day_2 view=COV ## Coverage track track BRG1KD_peaks_D3_gtr5 parent BRG1KD on bigDataUrl ./BRG1KD_ATAC_bwigs/BRG1_KD_NFR_peaks/BRG1KD_Day3_NFR_peaks_replicate_intersection_enrich_gtr5.highdepth_rem.bb shortLabel BRG1KD Day_3_peaks_gtr5 longLabel BRG1KD Day_3_peaks_gtr5 type bigBed color 204,86,0 priority 1517 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:10 visibility full subGroups Group3=Day_3 view=COV #################################### ## track set ## Wysocka_BRG1_chip track Wysocka_BRG1_chipseq superTrack on show shortLabel Wysocka_BRG1_chipseq longLabel Wysocka_BRG1_chipseq priority 1100 # ################################## # # Overlay multiple stranded tracks track Wysocka_BRG1_ChIPseq superTrack Wysocka_BRG1_chipseq full container multiWig aggregate transparentOverlay shortLabel Wysocka_BRG1 longLabel Wysocka_BRG1 showSubtrackColorOnUi on type bigWig priority 1301 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full # ####################### ########### track BRG1 parent Wysocka_BRG1_ChIPseq bigDataUrl ./Other_peoples_data/GSM602297_ESC_BRG1_aligned_hg19_sorted.bw type bigWig color 146,40,40 priority 1102 #################################### ## track set ## SOX2_hESC_GSM1701825 track SOX2_hescs superTrack on show shortLabel SOX2_hescs longLabel SOX2_hescs priority 1100 # ################################## # # Overlay multiple stranded tracks track SOX2_hescs_ChIP superTrack SOX2_hescs full container multiWig aggregate transparentOverlay shortLabel SOX2 longLabel SOX2 showSubtrackColorOnUi on type bigWig priority 1301 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full # ####################### ########### track SOX2 parent SOX2_hescs_ChIP bigDataUrl ./Other_peoples_data/GSM1701825_ESC_SOX2_hg19.bw type bigWig color 246,40,40 priority 1102 #################################### ## track set ## ATAC-seq_35_80 track WPS_35_80_Normalized superTrack on show shortLabel WPS_35_80_Normalized longLabel WPS_35_80_Normalized priority 1100 #2 ################################## # # Overlay multiple stranded tracks track BAF47KD_unt_vs_Day3_35_80 superTrack WPS_35_80_Normalized full container multiWig aggregate transparentOverlay shortLabel BAF47_shRNA_unt_35_80 longLabel BAF47_shRNA_unt_35_80 showSubtrackColorOnUi on type bigWig priority 1101 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full # ####################### ########### track 367694_Unt parent BAF47KD_unt_vs_Day3_35_80 bigDataUrl ./BAF47KD_ATAC_bwigs/367694_Day0_reps1_2_35_80_WPS_genome_normalized_9_14_17.bw type bigWig color 138,138,59 priority 1102 ################################## track 367694_Day3_KD parent BAF47KD_unt_vs_Day3_35_80 bigDataUrl ./BAF47KD_ATAC_bwigs/367694_Day3_reps1_2_35_80_WPS_genome_normalized_9_14_17.bw type bigWig color 56,255,66 priority 1103 ## Beginning of track view track hESC_ChIPseq_peaks compositeTrack on shortLabel hESC_ChIPseq_peaks longLabel hESC_ChIPseq_peaks priority 1200 visibility full type bed 3 configurable on subGroup1 view Views \ COV=Coverage \ REGIONS=Regions subGroup2 Group1 Group1 \ SOX2=SOX2 subGroup3 Group2 Group2 \ BRG1_Crabtree=BRG1_Crabtree \ subGroup4 Group3 Group3 \ BRG1_Depaux=BRG1_Depaux \ subGroup5 Group4 Group4 \ Nanog=Nanog \ subGroup6 Group5 Group5 \ OCT4=OCT4 \ subGroup7 Group6 Group6 \ SIX5=SIX5 \ subGroup8 Group7 Group7 \ TEAD4=TEAD4 \ subGroup9 Group8 Group8 \ cJUN=cJUN \ dimensions dimX=Group1 #dimY=Group2 sortOrder Group1=+ view=+ sortOrder Group2=+ view=+ sortOrder Group3=+ view=+ sortOrder Group4=+ view=+ sortOrder Group5=+ view=+ sortOrder Group6=+ view=+ sortOrder Group7=+ view=+ sortOrder Group8=+ view=+ ## Views track coverage data track ENCODE_Peaks parent hESC_ChIPseq_peaks shortLabel Coverage view COV visibility full type bed 3 allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:100 viewUi on ## Coverage track track SOX2_hesc_ChIPseq_peaks parent ENCODE_Peaks on bigDataUrl ./Other_peoples_data/GSM1701825_ESC_SOX2.bb shortLabel SOX2_hescs_peak longLabel SOX2_hescs_peak type bigBed color 246,40,40 priority 1201 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:10 visibility full subGroups Group1=SOX2 view=COV ## Coverage track track BRG1_mesc_ChIPseq_Crabtree parent ENCODE_Peaks on bigDataUrl ./Other_peoples_data/GSM359413_mm8-EScell-Brg-J1B-binding-regions_liftover_hg19.bb shortLabel BRG1_mescs_Crabtree longLabel BRG1_mescs_Crabtree type bigBed color 146,40,40 priority 1202 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:10 visibility full subGroups Group2=BRG1_Crabtree view=COV ## Coverage track track BRG1_mesc_ChIPseq_Depaux parent ENCODE_Peaks on bigDataUrl ./Other_peoples_data/GSM1581287_wigs_for_Brg1_reps1_2_liftover_hg19_0_4_merge.bb shortLabel BRG1_mescs_Depaux longLabel BRG1_mescs_Depaux type bigBed color 146,40,40 priority 1203 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:10 visibility full subGroups Group3=BRG1_Depaux view=COV ## Coverage track track NANOG_hesc_ChIPseq parent ENCODE_Peaks on bigDataUrl ./Other_peoples_data/wgEncodeAwgTfbsHaibH1hescNanogsc33759V0416102UniPk_sort.bb shortLabel NANOG_hescs longLabel NANOG_hescs type bigBed color 146,40,40 priority 1204 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:10 visibility full subGroups Group4=Nanog view=COV ## Coverage track track OCT4_hesc_ChIPseq parent ENCODE_Peaks on bigDataUrl ./Other_peoples_data/wgEncodeAwgTfbsHaibH1hescPou5f1sc9081V0416102UniPk_sort.bb shortLabel OCT4_hescs longLabel OCT4_hescs type bigBed color 146,40,40 priority 1205 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:10 visibility full subGroups Group5=OCT4 view=COV ## Coverage track track SIX5_hesc_ChIPseq parent ENCODE_Peaks on bigDataUrl ./Other_peoples_data/wgEncodeAwgTfbsHaibH1hescSix5Pcr1xUniPk_sort.bb shortLabel SIX5_hescs longLabel SIX5_hescs type bigBed color 146,40,40 priority 1206 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:10 visibility full subGroups Group6=SIX5 view=COV ## Coverage track track TEAD4_hesc_ChIPseq parent ENCODE_Peaks on bigDataUrl ./Other_peoples_data/wgEncodeAwgTfbsHaibH1hescTead4sc101184V0422111UniPk_sort.bb shortLabel TEAD4_hescs longLabel TEAD4_hescs type bigBed color 146,40,40 priority 1207 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:10 visibility full subGroups Group7=TEAD4 view=COV ## Coverage track track cJUN_hesc_ChIPseq parent ENCODE_Peaks on bigDataUrl ./Other_peoples_data/wgEncodeAwgTfbsSydhH1hescCjunIggrabUniPk_sort.bb shortLabel cJUN_hescs longLabel cJUN_hescs type bigBed color 146,40,40 priority 1208 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:10 visibility full subGroups Group8=cJUN view=COV #################################### ## track set ## ATAC-seq_35_80 track Neural_induction_D36 superTrack on show shortLabel Neural_induction_D36 longLabel Neural_induction_D36 priority 1800 #2 ################################## # # Overlay multiple stranded tracks track Neural_induction_D3_untreated superTrack Neural_induction_D36 full container multiWig aggregate transparentOverlay shortLabel Neural_induction_D3_untreated longLabel Neural_induction_D3_untreated showSubtrackColorOnUi on type bigWig priority 1801 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full # ####################### ########### track Neural_ind_D3_Rep1_unt parent Neural_induction_D3_untreated bigDataUrl ./ATACseq_norm_bws_1_12_18/BAF47KD_unt_Day3_rep1_uniq_NFR_possort.dedupe_norm_1_12_18.bw type bigWig color 155,244,146 priority 1802 ################################## track Neural_ind_D3_Rep2_unt parent Neural_induction_D3_untreated bigDataUrl ./ATACseq_norm_bws_1_12_18/BAF47KD_unt_Day3_rep2_uniq_NFR_possort.dedupe_norm_1_12_18.bw type bigWig color 84,239,67 priority 1803 #4 ################################## # # Overlay multiple stranded tracks track Neural_induction_D6_untreated superTrack Neural_induction_D36 full container multiWig aggregate transparentOverlay shortLabel Neural_induction_D6_untreated longLabel Neural_induction_D6_untreated showSubtrackColorOnUi on type bigWig priority 1804 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full #4 ####################### ########### track Neural_ind_D6_Rep1_unt parent Neural_induction_D6_untreated bigDataUrl ./ATACseq_norm_bws_1_12_18/BAF47KD_unt_Day6_rep1_uniq_NFR_possort.dedupe_norm_1_12_18.bw type bigWig color 71,255,255 priority 1805 #4################################# track Neural_ind_D6_Rep2_unt parent Neural_induction_D6_untreated bigDataUrl ./ATACseq_norm_bws_1_12_18/BAF47KD_unt_Day6_rep2_uniq_NFR_possort.dedupe_norm_1_12_18.bw type bigWig color 187,232,232 priority 1806 #2 ################################## # # Overlay multiple stranded tracks track Neural_induction_D3_47KD superTrack Neural_induction_D36 full container multiWig aggregate transparentOverlay shortLabel Neural_induction_D3_47KD longLabel Neural_induction_D3_47KD showSubtrackColorOnUi on type bigWig priority 1807 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full # ################################## track Neural_ind_D3_47KD_Rep1 parent Neural_induction_D3_47KD bigDataUrl ./ATACseq_norm_bws_1_12_18/BAF47KD_plusdox_Day3_rep1_uniq_NFR_possort.dedupe_norm_1_12_18.bw type bigWig color 203,186,255 priority 1808 ################################## track Neural_ind_D3_47KD_Rep2 parent Neural_induction_D3_47KD bigDataUrl ./ATACseq_norm_bws_1_12_18/BAF47KD_plusdox_Day3_rep2_uniq_NFR_possort.dedupe_norm_1_12_18.bw type bigWig color 153,122,249 priority 1809 #4 ################################## # # Overlay multiple stranded tracks track Neural_induction_D6_47KD superTrack Neural_induction_D36 full container multiWig aggregate transparentOverlay shortLabel Neural_induction_D6_47KD longLabel Neural_induction_D6_47KD showSubtrackColorOnUi on type bigWig priority 1810 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full #4 ####################### ########### track Neural_ind_D6_47KD_Rep1 parent Neural_induction_D6_47KD bigDataUrl ./ATACseq_norm_bws_1_12_18/BAF47KD_plusdox_Day6_rep1_uniq_NFR_possort.dedupe_norm_1_12_18.bw type bigWig color 244,127,127 priority 1811 #4################################# track Neural_ind_D6_47KD_Rep2 parent Neural_induction_D6_47KD bigDataUrl ./ATACseq_norm_bws_1_12_18/BAF47KD_plusdox_Day6_rep2_uniq_NFR_possort.dedupe_norm_1_12_18.bw type bigWig color 249,54,54 priority 1812 ## Beginning of track view track BAF47KD_neural_ind_peaks compositeTrack on shortLabel BAF47KD_NFR_NI_peaks longLabel BAF47KD_NFR_NI_peaks priority 2600 visibility full type bed 3 configurable on subGroup1 view Views \ COV=Coverage \ REGIONS=Regions subGroup2 Group1 Group1 \ Untreated_Day3=Untreated_Day3 subGroup3 Group2 Group2 \ BAF47KD_Day3=BAF47KD_Day3 \ subGroup4 Group3 Group3 \ Untreated_Day6=Untreated_Day6 \ subGroup5 Group3 Group3 \ BAF47KD_Day6=BAF47KD_Day6 \ dimensions dimX=Group1 #dimY=Group2 sortOrder Group1=+ view=+ sortOrder Group2=+ view=+ sortOrder Group3=+ view=+ ## Views track coverage data track BAF47KD_neural_ind parent BAF47KD_neural_ind_peaks shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:100 viewUi on ## Coverage track track Day3_unt_peaks parent BAF47KD_neural_ind on bigDataUrl ./BAF47KD_Neural_induction_bwigs/Peak_files/BAF47KD_neural_ind_unt_Day3_peaks_high_depth_rem_rep1_2_intersect.bb shortLabel Untreated_Day3 longLabel Untreated_Day3 type bigBed color 84,239,67 priority 2613 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:10 visibility full subGroups Group1=Untreated_Day3 view=COV ## Coverage track track Day3_plusdox_peaks parent BAF47KD_neural_ind on bigDataUrl ./BAF47KD_Neural_induction_bwigs/Peak_files/BAF47KD_neural_ind_plusdox_Day3_peaks_high_depth_rem_rep1_2_intersect.bb shortLabel BAF47KD_Day_3 longLabel BAF47KD_Day_3 type bigBed color 153,122,249 priority 2615 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:10 visibility full subGroups Group2=BAF47KD_Day3 view=COV ## Coverage track track Day6_unt_peaks parent BAF47KD_neural_ind on bigDataUrl ./BAF47KD_Neural_induction_bwigs/Peak_files/BAF47KD_neural_ind_unt_Day6_peaks_high_depth_rem_rep1_2_intersect.bb shortLabel Untreated_Day6 longLabel Untreated_Day6 type bigBed color 18,119,234 priority 2613 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:10 visibility full subGroups Group3=Untreated_Day6 view=COV ## Coverage track track Day6_plusdox_peaks parent BAF47KD_neural_ind on bigDataUrl ./BAF47KD_Neural_induction_bwigs/Peak_files/BAF47KD_neural_ind_plusdox_Day6_peaks_high_depth_rem_rep1_2_intersect.bb shortLabel BAF47KD_Day_6 longLabel BAF47KD_Day_6 type bigBed color 249,54,54 priority 2615 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:10 visibility full subGroups Group4=BAF47KD_Day6 view=COV ## Beginning of track view track hESCS_enhancer_tracks compositeTrack on shortLabel Enhancer_tracks longLabel Enhancer_tracks priority 2700 visibility full type bed 3 configurable on subGroup1 view Views \ COV=Coverage \ REGIONS=Regions subGroup2 Group1 Group1 \ H1_super=H1_super subGroup3 Group2 Group2 \ H1_Classic_Young=H1_Classic_Young \ subGroup4 Group3 Group3 \ Class_I_Wysocka=Class_I_Wysocka \ subGroup5 Group4 Group4 \ BAF47_ChIPseq=BAF47_ChIPseq \ dimensions dimX=Group1 #dimY=Group2 sortOrder Group1=+ view=+ sortOrder Group2=+ view=+ sortOrder Group3=+ view=+ ## Views track coverage data track hESCS_enhancers parent hESCS_enhancer_tracks shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:100 viewUi on ## Coverage track track H1_superenhancers parent hESCS_enhancers on bigDataUrl ./Other_peoples_data/H1_super_sort.bb shortLabel H1_super longLabel H1_super type bigBed color 124,6,4 priority 2713 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:10 visibility full subGroups Group1=H1_super view=COV ## Coverage track track H1_Classic_enhancers parent hESCS_enhancers on bigDataUrl ./Other_peoples_data/YOUNG_classic_sort.bb shortLabel H1_classic longLabel H1_classic type bigBed color 124,6,4 priority 2715 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:10 visibility full subGroups Group2=H1_Classic_Young view=COV ## Coverage track track Class_I_Wysocka parent hESCS_enhancers on bigDataUrl ./Other_peoples_data/Class_I_hg19_sort.bb shortLabel Class_I_Wysocka longLabel Class_I_Wysocka type bigBed color 124,6,4 priority 2717 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:10 visibility full subGroups Group3=Class_I_Wysocka view=COV ## Coverage track track BAF47_ChIP_seq_pks_D8M1X parent hESCS_enhancers on bigDataUrl ./ChIPseq_tracks/BigBeds/BAF47_ChIPseq_peaks_HDR_sort.bb shortLabel BAF47 longLabel BAF47 type bigBed color 0,0,0 priority 2717 alwaysZero on graphTypeDefault bar maxHeightPixels 100:60:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:10 visibility full subGroups Group4=BAF47_ChIPseq view=COV #################################### ## track set ## ATAC-seq track ATACseq_nucATAC_smooth superTrack on show shortLabel ATACseq_nucATAC_smooth longLabel ATACseq_nucATAC_smooth priority 1100 #2 ################################## # # Overlay multiple stranded tracks track BAF47_KD_unt_nucATAC_smooth superTrack ATACseq_nucATAC_smooth full container multiWig aggregate transparentOverlay shortLabel BAF47_KD_unt_nucATAC_smooth longLabel BAF47_KD_unt_nucATAC_smooth showSubtrackColorOnUi on type bigWig priority 1101 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full # ####################### ########### track Unt_Rep1_nucATAC_smooth parent BAF47_KD_unt_nucATAC_smooth bigDataUrl ./BAF47KD_ATAC_bwigs/NS50453_BAF47KD_Langer_Day0_rep1_1.sickle.sanger.cutadapt.hg19_uniq.possort.dedupe.nucleoatac_signal.smooth.bw type bigWig color 138,138,59 priority 1102 ################################## track Unt_Rep2_nucATAC_smooth parent BAF47_KD_unt_nucATAC_smooth bigDataUrl ./BAF47KD_ATAC_bwigs/NS50453_BAF47KD_Langer_Day0_rep2_1.sickle.sanger.cutadapt.hg19_uniq.possort.dedupe.nucleoatac_signal.smooth.bw type bigWig color 108,108,59 priority 1101 #3 ################################## # # Overlay multiple stranded tracks track BAF47_KD_D2_nucATAC_smooth superTrack ATACseq_nucATAC_smooth full container multiWig aggregate transparentOverlay shortLabel BAF47_KD_D2_nucATAC_smooth longLabel BAF47_KD_D2_nucATAC_smooth showSubtrackColorOnUi on type bigWig priority 1101 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full #3 ####################### ########### track Day2_Rep1_nucATAC_smooth parent BAF47_KD_D2_nucATAC_smooth bigDataUrl ./BAF47KD_ATAC_bwigs/NS50453_BAF47KD_Langer_Day2_rep1_1.sickle.sanger.cutadapt.hg19_uniq.possort.dedupe.nucleoatac_signal.smooth.bw type bigWig color 208,50,60 priority 1102 #3################################# track Day2_Rep2_nucATAC_smooth parent BAF47_KD_D2_nucATAC_smooth bigDataUrl ./BAF47KD_ATAC_bwigs/NS50453_BAF47KD_Langer_Day2_rep2_1.sickle.sanger.cutadapt.hg19_uniq.possort.dedupe.nucleoatac_signal.smooth.bw type bigWig color 180,50,60 priority 1101 #4 ################################## # # Overlay multiple stranded tracks track BAF47_KD_D3_nucATAC_smooth superTrack ATACseq_nucATAC_smooth full container multiWig aggregate transparentOverlay shortLabel BAF47_KD_D3_nucATAC_smooth longLabel BAF47_KD_D3_nucATAC_smooth showSubtrackColorOnUi on type bigWig priority 1101 alwaysZero off graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -50:50 visibility full #4 ####################### ########### track Day3_Rep1_nucATAC_smooth parent BAF47_KD_D3_nucATAC_smooth bigDataUrl ./BAF47KD_ATAC_bwigs/NS50453_BAF47KD_Langer_Day3_rep1_1.sickle.sanger.cutadapt.hg19_uniq.possort.dedupe.nucleoatac_signal.smooth.bw type bigWig color 56,148,66 priority 1102 #4################################# track Day3_Rep2_nucATAC_smooth parent BAF47_KD_D3_nucATAC_smooth bigDataUrl ./BAF47KD_ATAC_bwigs/NS50453_BAF47KD_Langer_Day3_rep2_1.sickle.sanger.cutadapt.hg19_uniq.possort.dedupe.nucleoatac_signal.smooth.bw type bigWig color 56,255,66 priority 1101 #################################### ## track set ## Wysocka_BRG1_chip track BAF47_ChIPseq_Oct2018 superTrack on show shortLabel BAF47_ChIPseq_Oct2018 longLabel BAF47_ChIPseq_Oct2018 priority 1800 # ################################## # # Overlay multiple stranded tracks track ChIPseq_control superTrack BAF47_ChIPseq_Oct2018 full container multiWig aggregate transparentOverlay shortLabel ChIPseq_Input longLabel ChIPseq_Input showSubtrackColorOnUi on type bigWig priority 1801 alwaysZero on configurable on graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -100:100 visibility full # ####################### ########### track Input parent ChIPseq_control bigDataUrl ./ChIPseq_tracks/ChIPseq_bws/H1_INPUT_cutadapt.sickle.hg19_uniq.possort.dedupe_sort.bw type bigWig color 117,117,117 priority 1802 # ################################## # # Overlay multiple stranded tracks track ChIPseq_BAF47_D8M1X superTrack BAF47_ChIPseq_Oct2018 full container multiWig aggregate transparentOverlay shortLabel ChIPseq_BAF47 longLabel ChIPseq_BAF47 showSubtrackColorOnUi on type bigWig priority 1803 alwaysZero on graphTypeDefault bar maxHeightPixels 100:66:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits -100:100 visibility full # ####################### ########### track BAF47_D8M1X parent ChIPseq_BAF47_D8M1X bigDataUrl ./ChIPseq_tracks/ChIPseq_bws/H1_BAF47_cutadapt.sickle.hg19_uniq.possort.dedupe_sort.bw type bigWig color 0,0,0 priority 1804