## Beginning of track view
track             NG70Rao_siBrg1
compositeTrack    on
shortLabel        NG70Rao_siBrg1
longLabel         NG70Rao_siBrg1
priority          900
visibility        full
type              bed 3
configurable      on
subGroup1         view Views \
   COV=Coverage \
   PEAK=Peaks \
   JUNC=Junctions
subGroup2         Group1 Genotype \ 
    NT=NT \
    siBrg1=siBrg1
subGroup3         Group2 Replicate \ 
    rep=replicate \
    union=union
dimensions        dimX=Group1 dimY=Group2
sortOrder         Group1=+ Group2=+  view=+
 
   ## Views track for RNAseq, junctions data
   track             NG70Rao_siBrg1View2
   parent            NG70Rao_siBrg1
   shortLabel        RNAseq_junctions
   view              JUNC
   visibility        pack
   type              bigBed 12
   allButtonPair     on
   centerLabelsDense on
   dragAndDrop       on
   thickDrawItem     on
   scoreFilter       20
   scoreFilterLimits 1:1000
   viewUi            on
 
      # combined junctions track
      track             ES365_junctions
      parent            NG70Rao_siBrg1View2
      bigDataUrl        ES365_1.sickle.merged.cutadapt.topHat2peStr_hg19.sorted.bb
      shortLabel        NT_ng70 ES365 junctions
      longLabel         NT_ng70 ES365 junctions
      type              bigBed 12
      visibility        pack
      priority          902
      scoreMin          10
      scoreMax          100
      color             123,31,31
      subGroups         Group1=NT Group2=rep view=JUNC
 
      # combined junctions track
      track             ES366_junctions
      parent            NG70Rao_siBrg1View2
      bigDataUrl        ES366_1.sickle.merged.cutadapt.topHat2peStr_hg19.sorted.bb
      shortLabel        NT_ng70 ES366 junctions
      longLabel         NT_ng70 ES366 junctions
      type              bigBed 12
      visibility        pack
      priority          904
      scoreMin          10
      scoreMax          100
      color             123,31,31
      subGroups         Group1=NT Group2=rep view=JUNC
 
      # combined junctions track
      track             ES367_junctions
      parent            NG70Rao_siBrg1View2
      bigDataUrl        ES367_1.sickle.merged.cutadapt.topHat2peStr_hg19.sorted.bb
      shortLabel        siBrg1_ng70 ES367 junctions
      longLabel         siBrg1_ng70 ES367 junctions
      type              bigBed 12
      visibility        pack
      priority          906
      scoreMin          10
      scoreMax          100
      color             141,102,0
      subGroups         Group1=siBrg1 Group2=rep view=JUNC
 
      # combined junctions track
      track             ES368_junctions
      parent            NG70Rao_siBrg1View2
      bigDataUrl        ES368_1.sickle.merged.cutadapt.topHat2peStr_hg19.sorted.bb
      shortLabel        siBrg1_ng70 ES368 junctions
      longLabel         siBrg1_ng70 ES368 junctions
      type              bigBed 12
      visibility        pack
      priority          908
      scoreMin          10
      scoreMax          100
      color             141,102,0
      subGroups         Group1=siBrg1 Group2=rep view=JUNC
 
      # combined junctions track
      track             NT_ng70_junctions
      parent            NG70Rao_siBrg1View2 on
      bigDataUrl        NT_ng70.TopHat2_hg19.combinedJunctions.bb
      shortLabel        NT_ng70 junctions
      longLabel         NT_ng70 junctions
      type              bigBed 12
      visibility        pack
      priority          910
      scoreMin          10
      scoreMax          100
      color             123,31,31
      subGroups         Group1=NT Group2=union view=JUNC
 
      # combined junctions track
      track             siBrg1_ng70_junctions
      parent            NG70Rao_siBrg1View2 on
      bigDataUrl        siBrg1_ng70.TopHat2_hg19.combinedJunctions.bb
      shortLabel        siBrg1_ng70 junctions
      longLabel         siBrg1_ng70 junctions
      type              bigBed 12
      visibility        pack
      priority          912
      scoreMin          10
      scoreMax          100
      color             141,102,0
      subGroups         Group1=siBrg1 Group2=union view=JUNC