#################################### ## track set ## Working Tracks track FAIRE-seq_hormone compositeTrack on shortLabel FAIRE-seq_Dex longLabel FAIRE-seq_Dex_and_ETOH_in_MCF7 type bigWig allButtonPair on centerLabelsDense on dragAndDrop on priority 1200 alwaysZero on graphTypeDefault bar maxHeightPixels 100:44:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits 0:50 visibility full # ################################## # bigWig coverage track # FAIRE_dex_nisc.sorted.bw track FAIRE-seq_Dex parent FAIRE-seq_hormone bigDataUrl FAIRE_dex_nisc.sorted.bw shortLabel FAIRE-seq_Dex longLabel FAIRE-seq_Dex_coverage type bigWig color 0,0,0 priority 1201 alwaysZero on graphTypeDefault bar maxHeightPixels 100:44:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits 0:50 visibility full # ################################## # bigWig coverage track # FAIRE_etoh_nisc.sorted.bw track FAIRE-seq_etoh parent FAIRE-seq_hormone bigDataUrl FAIRE_etoh_nisc.sorted.bw shortLabel FAIRE-seq_etoh longLabel FAIRE-seq_etoh_coverage type bigWig color 255,0,0 priority 1201 alwaysZero on graphTypeDefault bar maxHeightPixels 100:44:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits 0:50 visibility full #################################### ## track set ## GR ChIP Seq track GR_ChIPseq compositeTrack on shortLabel GR_ChIP-seq longLabel GR_ChIP-seq_BSs type bigBed allButtonPair on centerLabelsDense on dragAndDrop on priority 1000 alwaysZero on graphTypeDefault bar maxHeightPixels 100:44:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits 0:50 visibility full # ################################## # bigBed coverage track # dex_18Hr_hg18_VCD_sorted.bigbed track GR_CHIP_seq_18hr parent GR_ChIPseq bigDataUrl dex_18Hr_hg18_VCD_sorted.bigbed shortLabel GR_ChIP-seq_18hr longLabel GR_ChIP-seq_18hr_VCD_MCF7 type bigBed color 111,151,22 priority 1001 alwaysZero on graphTypeDefault bar maxHeightPixels 100:44:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits 0:50 visibility full # ################################## # bigBed coverage track # reddy_etal_grpeak.bigBed track GR_CHIP_seq_8hr parent GR_ChIPseq bigDataUrl reddy_etal_grpeak.bigBed shortLabel GR_CHIP_seq_8hr longLabel GR_CHIP_seq_8hr_Reddyetal_A549 type bigBed color 22,151,111 priority 1001 alwaysZero on graphTypeDefault bar maxHeightPixels 100:44:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits 0:50 visibility full #################################### ## track set ## H1.5 ChIP seq in IMR90 track H15_ChIPseq compositeTrack on shortLabel H1_5 longLabel H15_ChIP_seq_IMR90 type bigWig allButtonPair on centerLabelsDense on dragAndDrop on priority 1000 alwaysZero on maxHeightPixels 100:44:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits 0:50 visibility full # ################################## # bed coverage track # H1.5 ChIP seq in IMR90 track H15_IP parent H15_ChIPseq bigDataUrl H15_ChIP_trimmed_hg18_N1_readextend.bigWig shortLabel H15_IP longLabel H15_ChIP_seq_IP_read_Extended type bigWig color 64,0,255 priority 1002 alwaysZero on graphTypeDefault bar maxHeightPixels 100:44:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits 0:50 visibility full # ################################## # bed coverage track # H1.5 Input seq in IMR90 track H15_Input parent H15_ChIPseq bigDataUrl H15_input_trim18_hg18_N1_read_extend.bigWig shortLabel H15_Inout longLabel H15_input_seq_read_Extended type bigWig color 64,255,0 priority 1002 alwaysZero on graphTypeDefault bar maxHeightPixels 100:44:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits 0:50 visibility full # #################################### # ## track set # ## H1.5 ChIP seq in IMR90 # track H15_ChIPseq # compositeTrack on # shortLabel H1_5 # longLabel H15_ChIP_seq_IMR90 # type bigWig # allButtonPair on # centerLabelsDense on # dragAndDrop on # priority 1000 # alwaysZero on # maxHeightPixels 100:44:8 # smoothingWindow 2 # transformFunc NONE # windowingFunction mean+whiskers # gridDefault on # autoScale on # viewLimits 0:50 # visibility full # # # ################################## # # bam coverage track # # H1.5 ChIP seq in IMR90 -- Input # track H15_Input # parent H15_ChIPseq # bigDataUrl H15_input_hg18_N1.bw # shortLabel H15_Input # longLabel H15_ChIP_seq_IMR90_input # type bigWig # color 64,0,255 # priority 1002 # alwaysZero on # graphTypeDefault bar # maxHeightPixels 100:44:8 # smoothingWindow 2 # transformFunc NONE # windowingFunction mean+whiskers # gridDefault on # autoScale on # viewLimits 0:50 # visibility full # # # # ################################## # # bam coverage track # # H1.5 ChIP seq in IMR90 -- IP # track H15_IP # parent H15_ChIPseq # bigDataUrl H15_ChIP_hg18_N1.bw # shortLabel H15_IP # longLabel H15_ChIP_seq_IMR90_IP # type bigWig # color 255,0,64 # priority 1001 # alwaysZero on # graphTypeDefault bar # maxHeightPixels 100:44:8 # smoothingWindow 2 # transformFunc NONE # windowingFunction mean+whiskers # gridDefault on # autoScale on # viewLimits 0:50 # visibility full # # # ################################## # # bam coverage track # # H1.5 ChIP seq in IMR90 read extenstion-- IP # track H15_IP_ext # parent H15_ChIPseq # bigDataUrl H15_ChIP_ext_hg18_N1.bw # shortLabel H15_IP_ext # longLabel H15_ChIP_seq_IMR90_IP_read_ext # type bigWig # color 255,0,64 # priority 1001 # alwaysZero on # graphTypeDefault bar # maxHeightPixels 100:44:8 # smoothingWindow 2 # transformFunc NONE # windowingFunction mean+whiskers # gridDefault on # autoScale on # viewLimits 0:50 # visibility full #################################### ## track set ## H1.4Eac ChIP seq track H14K34acChIPseq compositeTrack on shortLabel H14K34ac longLabel H14K34ac_ChIP_seq type bigWig color 111,151,22 priority 900 alwaysZero on graphTypeDefault bar maxHeightPixels 100:44:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits 0:50 visibility full # ################################## # bam coverage track # H1.4Eac ChIP seq -- IgG track H14K34ac_IgG parent H14K34acChIPseq bigDataUrl H1Eac_ChIP_IgG_hg18_N1_coverage.bw shortLabel H14K34ac_IgG longLabel H14K34ac_ChIP_seq_MCF7_IgG type bigWig color 32,0,0 priority 901 alwaysZero on graphTypeDefault bar maxHeightPixels 100:44:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits 0:50 visibility full # ################################## # bam coverage track # H1.4Eac ChIP seq -- IP rep1 track H14K34ac_rep1 parent H14K34acChIPseq bigDataUrl H1Eac_ChIP_rep1_hg18_N1_coverage.bw shortLabel H14K34ac_rep1 longLabel H14K34ac_ChIP_seq_MCF7_IP_rep1 type bigWig color 0,0,64 priority 902 alwaysZero on graphTypeDefault bar maxHeightPixels 100:44:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits 0:50 visibility full # ################################## # bam coverage track # H1.4Eac ChIP seq -- IP rep2 track H14K34ac_rep2 parent H14K34acChIPseq bigDataUrl H1Eac_ChIP_rep2_hg18_N1_mapped_sorted.bw shortLabel H14K34ac_rep2 longLabel H14K34ac_ChIP_seq_MCF7_IP_rep2 type bigWig color 0,0,64 priority 902 alwaysZero on graphTypeDefault bar maxHeightPixels 100:44:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on autoScale on viewLimits 0:50 visibility full # #################################### # ## track set # ## H1 DamID # track H1_DamID # compositeTrack on # shortLabel H1_DamID # longLabel H1_DamID_ChIP # type bigWig # allButtonPair on # centerLabelsDense on # dragAndDrop on # priority 1000 # alwaysZero on # graphTypeDefault bar # maxHeightPixels 100:44:8 # smoothingWindow 2 # transformFunc NONE # windowingFunction mean+whiskers # gridDefault on # autoScale on # viewLimits 0:50 # visibility full # # # # # ################################## # # bigWig coverage track # # H11_DamID.bw # track H11_DamID # parent H1_DamID # bigDataUrl H11_DamID.bw # shortLabel H11_DamID # longLabel H11_DamID_Chip # type bigWig # color 111,151,22 # priority 1001 # alwaysZero on # graphTypeDefault bar # maxHeightPixels 100:44:8 # smoothingWindow 2 # transformFunc LOG # windowingFunction mean+whiskers # gridDefault on # autoScale on # viewLimits 0:50 # visibility full # # # # ################################## # # bigWig coverage track # # H12_DamID.bw # track H12_DamID # parent H1_DamID # bigDataUrl H12_DamID.bw # shortLabel H12_DamID # longLabel H12_DamID_Chip # type bigWig # color 111,151,22 # priority 1001 # alwaysZero on # graphTypeDefault bar # maxHeightPixels 100:44:8 # smoothingWindow 2 # transformFunc LOG # windowingFunction mean+whiskers # gridDefault on # autoScale on # viewLimits 0:50 # visibility full # # # ################################## # # bigWig coverage track # # H13_DamID.bw # track H13_DamID # parent H1_DamID # bigDataUrl H13_DamID.bw # shortLabel H13_DamID # longLabel H13_DamID_Chip # type bigWig # color 111,151,22 # priority 1001 # alwaysZero on # graphTypeDefault bar # maxHeightPixels 100:44:8 # smoothingWindow 2 # transformFunc LOG # windowingFunction mean+whiskers # gridDefault on # autoScale on # viewLimits 0:50 # visibility full # # # ################################## # # bigWig coverage track # # H14_DamID.bw # track H14_DamID # parent H1_DamID # bigDataUrl H14_DamID.bw # shortLabel H14_DamID # longLabel H14_DamID_Chip # type bigWig # color 111,151,22 # priority 1001 # alwaysZero on # graphTypeDefault bar # maxHeightPixels 100:44:8 # smoothingWindow 2 # transformFunc LOG # windowingFunction mean+whiskers # gridDefault on # autoScale on # viewLimits 0:50 # visibility full # # # ################################## # # bigWig coverage track # # H15_DamID.bw # track H15_DamID # parent H1_DamID # bigDataUrl H15_DamID.bw # shortLabel H15_DamID # longLabel H15_DamID_Chip # type bigWig # color 111,151,22 # priority 1001 # alwaysZero on # graphTypeDefault bar # maxHeightPixels 100:44:8 # smoothingWindow 2 # transformFunc LOG # windowingFunction mean+whiskers # gridDefault on # autoScale on # viewLimits 0:50 # visibility full