####################################
## track set
## Binding Site data
track                Baf60a_ChIPseq
compositeTrack       on
shortLabel           Baf60a_ChIP-seq
longLabel            Baf60a ChIP-seq coverage in mouse ES cells
type                 bigWig
allButtonPair        on
centerLabelsDense    on
dragAndDrop          on
priority             1200
alwaysZero           on
graphTypeDefault     bar
maxHeightPixels      100:44:8
smoothingWindow      2
transformFunc        NONE
gridDefault          on
autoScale            on
viewLimits           0:50
visibility           full

   # ##################################
   # bigWig coverage track
   # ESC Input ChIP seq from 
   track             ES_Input
   parent            Baf60a_ChIPseq
   bigDataUrl        289_R1_S_INPUT_merged.aln_sort.bigwig
   shortLabel        ES Input
   longLabel         Input from ESCs
   type              bigWig
   color             0,0,128
   priority          1201
   alwaysZero        on
   graphTypeDefault  bar
   maxHeightPixels   100:44:8
   smoothingWindow   2
   transformFunc     NONE
   gridDefault       on
   autoScale         on
   viewLimits        0:50
   visibility        full
 
   # ##################################
   # bigWig coverage track
   # ESC RA Input ChIP seq from 
   track             ES_RA_Input
   parent            Baf60a_ChIPseq
   bigDataUrl        290_R1_RA_INPUT_merged.aln_sort.bigwig
   shortLabel        ES RA Input
   longLabel         Input from ESCs treated with RA
   type              bigWig
   color             0,64,128
   priority          1201
   alwaysZero        on
   graphTypeDefault  bar
   maxHeightPixels   100:44:8
   smoothingWindow   2
   transformFunc     NONE
   gridDefault       on
   autoScale         on
   viewLimits        0:50
   visibility        full
   
   # ##################################
   # bigWig coverage track
   # ESC Baf60a ChIP seq from 
   track             ESC_Baf60a-IP
   parent            Baf60a_ChIPseq
   bigDataUrl        298_BAF_60_ES_merged.aln_sort.bigwig
   shortLabel        ESC Baf60a
   longLabel         Baf60a IP from ESCs
   type              bigWig
   color             0,0,128
   priority          1201
   alwaysZero        on
   graphTypeDefault  bar
   maxHeightPixels   100:44:8
   smoothingWindow   2
   transformFunc     NONE
   gridDefault       on
   autoScale         on
   viewLimits        0:50
   visibility        full
 
   # ##################################
   # bigWig coverage track
   # ESC RA Baf60a ChIP seq from 
   track             ES_RA_Baf60a-IP
   parent            Baf60a_ChIPseq
   bigDataUrl        299_BAF_60_RA_merged.aln_sort.bigwig
   shortLabel        ES RA Baf60a
   longLabel         Baf60a IP from ESCs treated with RA
   type              bigWig
   color             0,64,128
   priority          1201
   alwaysZero        on
   graphTypeDefault  bar
   maxHeightPixels   100:44:8
   smoothingWindow   2
   transformFunc     NONE
   gridDefault       on
   autoScale         on
   viewLimits        0:50
   visibility        full
   
# ##################################
# bigbed peak track
# ESC RA Baf60a ChIP seq from    
	track Brg1BindingSites
	type bigBed
	bigDataUrl Brg1_peaks_mm9_liftover.bigbed
	shortLabel Brg1 peaks
	longLabel Brg1 peaks from Young Lab LiftOver from mm8