## RNA-seq data coverage track set track raoRnaseqSiBrg1Set compositeTrack on shortLabel Rao RNA-seq coverage, TopHat2 longLabel Rao RNA-seq coverage, TopHat2 type bigWig allButtonPair on centerLabelsDense on dragAndDrop on priority 843 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## RNA-seq data coverage tracks ## WT_1 track Rao_WT_1 parent raoRnaseqSiBrg1Set on bigDataUrl ES365-1_1.sanger.sickle.topHat2pe_hg19.bw shortLabel WT_1 RNA-seq depth longLabel WT_1 RNA-seq depth type bigWig color 140,140,140 priority 844 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## WT_2 track Rao_WT_2 parent raoRnaseqSiBrg1Set on bigDataUrl ES366-1_1.sanger.sickle.topHat2pe_hg19.bw shortLabel WT_2 RNA-seq depth longLabel WT_2 RNA-seq depth type bigWig color 100,100,100 priority 845 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## siBrg1 track Rao_siBrg1_1 parent raoRnaseqSiBrg1Set on bigDataUrl ES367-1_1.sanger.sickle.topHat2pe_hg19.bw shortLabel siBrg1 RNA-seq depth longLabel siBrg1 RNA-seq depth type bigWig color 0,73,204 priority 846 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## siBrg1_2 track Rao_siBrg1_2 parent raoRnaseqSiBrg1Set on bigDataUrl ES368-1_1.sanger.sickle.topHat2pe_hg19.bw shortLabel siBrg1_2 RNA-seq depth longLabel siBrg1_2 RNA-seq depth type bigWig color 0,64,179 priority 847 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## GSM727557_d0Smad2-3_hg19.bb ################## ## Composite Track # GSE29422hg19 # track GSE29422hg19 compositeTrack on shortLabel GSE29422 Smad234 ESC hg19 longLabel GSE29422 Smad234 ESC hg19 type bigBed allButtonPair on centerLabelsDense on dragAndDrop on priority 2000 visibility dense ################################### # bigBed peaks GSM727557_d0Smad2-3 track GSM727557_d0Smad2-3 parent GSE29422hg19 on bigDataUrl GSM727557_d0Smad2-3_hg19.bb shortLabel day0 Smad2-3 longLabel GSM727557 day0 Smad2-3 type bigBed color 186,71,103 visibility dense priority 2001 ################################### # bigBed peaks GSM727558_d0Smad2-3_goat track GSM727558_d0Smad2-3_goat parent GSE29422hg19 on bigDataUrl GSM727558_d0Smad2-3_goat_hg19.bb shortLabel day0 Smad2-3_goat longLabel GSM727558 day0 Smad2-3_goat type bigBed color 186,71,103 visibility dense priority 2002 ################################### # bigBed peaks GSM727583_d5Smad2-3 track GSM727583_d5Smad2-3 parent GSE29422hg19 on bigDataUrl GSM727583_d5Smad2-3_hg19.bb shortLabel day5 Smad2-3 longLabel GSM727583 day5 Smad2-3 type bigBed color 127,34,60 visibility dense priority 2003 ################################### # bigBed peaks GSM727584_d5Smad2-3_goat track GSM727584_d5Smad2-3_goat parent GSE29422hg19 on bigDataUrl GSM727584_d5Smad2-3_goat_hg19.bb shortLabel day5 Smad2-3_goat longLabel GSM727584 day5 Smad2-3_goat type bigBed color 127,34,60 visibility dense priority 2004 ################################### # bigBed peaks GSM727559_d0Smad3 track GSM727559_d0Smad3 parent GSE29422hg19 on bigDataUrl GSM727559_d0Smad3_hg19.bb shortLabel day0 Smad3 longLabel GSM727559 day0 Smad3 type bigBed color 234,169,21 visibility dense priority 2005 ################################### # bigBed peaks GSM727585_d5Smad3 track GSM727585_d5Smad3 parent GSE29422hg19 on bigDataUrl GSM727585_d5Smad3_hg19.bb shortLabel day5 Smad3 longLabel GSM727585 day5 Smad3 type bigBed color 175,122,0 visibility dense priority 2006 ################################### # bigBed peaks GSM727561_d0Smad4 track GSM727561_d0Smad4 parent GSE29422hg19 on bigDataUrl GSM727561_d0Smad4_hg19.bb shortLabel day0 Smad4 longLabel GSM727561 day0 Smad4 type bigBed color 121,160,15 visibility dense priority 2007 ################################### # bigBed peaks GSM727586_d5Smad4 track GSM727586_d5Smad4 parent GSE29422hg19 on bigDataUrl GSM727586_d5Smad4_hg19.bb shortLabel day5 Smad4 longLabel GSM727586 day5 Smad4 type bigBed color 74,101,0 visibility dense priority 2008 ################################### # bigBed peaks GSM727564_d0Foxh1 track GSM727564_d0Foxh1 parent GSE29422hg19 on bigDataUrl GSM727564_d0Foxh1_hg19.bb shortLabel day0Foxh1 longLabel GSM727564 day0 Foxh1 type bigBed color 13,139,76 visibility dense priority 2009 ################################### # bigBed peaks GSM727589_d5Foxh1 track GSM727589_d5Foxh1 parent GSE29422hg19 on bigDataUrl GSM727589_d5Foxh1_hg19.bb shortLabel day5Foxh1 longLabel GSM727589 day5 Foxh1 type bigBed color 0,80,40 visibility dense priority 2010 ################################### # bigBed peaks GSM727572_d0K4_regions track GSM727572_d0K4_regions parent GSE29422hg19 on bigDataUrl GSM727572_d0K4.regions_hg19.bb shortLabel day0 K4_regions longLabel GSM727572 day0 K4_regions type bigBed color 16,153,172 visibility dense priority 2011 ################################### # bigBed peaks GSM727596_d5K4_regions track GSM727596_d5K4_regions parent GSE29422hg19 on bigDataUrl GSM727596_d5K4.regions_hg19.bb shortLabel day5 K4_regions longLabel GSM727596 day5 K4_regions type bigBed color 0,99,113 visibility dense priority 2012 ################################### # bigBed peaks GSM727577_d0K27_regions track GSM727577_d0K27_regions parent GSE29422hg19 on bigDataUrl GSM727577_d0K27.regions_hg19.bb shortLabel day0 K27_regions longLabel GSM727577 day0 K27_regions type bigBed color 114,147,230 visibility dense priority 2013 ################################### # bigBed peaks GSM727601_d5K27_regions track GSM727601_d5K27_regions parent GSE29422hg19 on bigDataUrl GSM727601_d5K27.regions_hg19.bb shortLabel day5 K27_regions longLabel GSM727601 day5 K27_regions type bigBed color 63,94,171 visibility dense priority 2014 # bigBed peaks GSM727601_d5K27_regions ################################### ################################### ## Brg1 ChIP-seq GEO data ## SRR067376.fastq.sickle_q20_l20.fastq.hg19.ext200.plus.bw ## SRR067376.fastq.sickle_q20_l20.fastq.hg19.ext200.minus-inverted.bw ## Overlay multiple tracks: track brg1GSM602297multiWig container multiWig aggregate transparentOverlay shortLabel Wysocka Brg1 H9 ChIP-seq longLabel Wysocka Brg1 H9 ChIP-seq GSM602297 showSubtrackColorOnUi on type bigWig viewLimits -20:20 maxHeightPixels 100:48:8 graphTypeDefault bar smoothingWindow 8 transformFunc NONE windowingFunction maximum visibility full gridDefault off track Brg1HESCplus bigDataUrl SRR067376.fastq.sickle_q20_l20.fastq.hg19.ext200.plus.bw type bigWig parent brg1GSM602297multiWig color 30,70,220 priority 2031 track Brg1HESCminus bigDataUrl SRR067376.fastq.sickle_q20_l20.fastq.hg19.ext200.minus-inverted.bw type bigWig parent brg1GSM602297multiWig color 170,0,0 priority 2032 ## RNA-seq data coverage track set track wadeRnaseqMir302Set compositeTrack on shortLabel Wade RNA-seq coverage, TopHat2 longLabel Wade RNA-seq coverage, TopHat2 type bigWig allButtonPair on centerLabelsDense on dragAndDrop on priority 833 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## RNA-seq data coverage tracks ## WT track wade_WT parent wadeRnaseqMir302Set on bigDataUrl ES314-4_1.sanger.sickle.topHat2pe_hg19.bw shortLabel WT RNA-seq depth longLabel WT RNA-seq depth type bigWig color 90,90,90 priority 834 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## mir302inh track wade_mir302inh parent wadeRnaseqMir302Set on bigDataUrl ES315-4_1.sanger.sickle.topHat2pe_hg19.bw shortLabel mir302inh RNA-seq depth longLabel mir302inh RNA-seq depth type bigWig color 174,33,33 priority 835 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## siBAF170 track wade_siBAF170 parent wadeRnaseqMir302Set on bigDataUrl ES316-4_1.sanger.sickle.topHat2pe_hg19.bw shortLabel siBAF170 RNA-seq depth longLabel siBAF170 RNA-seq depth type bigWig color 27,148,97 priority 836 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full ## siBAF155 track wade_siBAF155 parent wadeRnaseqMir302Set on bigDataUrl ES317-4_1.sanger.sickle.topHat2pe_hg19.bw shortLabel siBAF155 RNA-seq depth longLabel siBAF155 RNA-seq depth type bigWig color 127,75,170 priority 837 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction maximum gridDefault on viewLimits 0:200 visibility full