## Beginning of track view track trotterJune0214 compositeTrack on shortLabel Trotter ChIPseq June2014 longLabel Trotter ChIPseq June2014 priority 2200 visibility full type bed 3 configurable on subGroup1 view Views \ COV=Coverage \ PEAK=Peaks \ JUNC=Junctions subGroup2 Group1 Group1 \ InputEtOH=InputEtOH \ InputDex=InputDex \ Brg1EtOH=Brg1EtOH \ Brg1Dex=Brg1Dex \ GREtOH=GREtOH \ GRDex=GRDex \ Ku70EtOH=Ku70EtOH \ Ku70Dex=Ku70Dex sortOrder Group1=+ view=+ ## Views track coverage data track trotterJune0214View1 parent trotterJune0214 shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 viewUi on ## Coverage track track InputEtOH_coverage parent trotterJune0214View1 on bigDataUrl InputEtOH_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-150-bin10-normalizeUsingRPKM-scale.bw shortLabel InputEtOH coverage longLabel InputEtOH coverage type bigWig color 127,127,127 priority 2202 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=InputEtOH view=COV ## Coverage track track InputDex_coverage parent trotterJune0214View1 on bigDataUrl InputDex_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-150-bin10-normalizeUsingRPKM-scale.bw shortLabel InputDex coverage longLabel InputDex coverage type bigWig color 77,77,77 priority 2204 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=InputDex view=COV ## Coverage track track BRG1EtOH_coverage parent trotterJune0214View1 on bigDataUrl BRG1EtOH_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-150-bin10-normalizeUsingRPKM-scale.bw shortLabel Brg1EtOH coverage longLabel Brg1EtOH coverage type bigWig color 255,140,105 priority 2206 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Brg1EtOH view=COV ## Coverage track track BRG1Dex_coverage parent trotterJune0214View1 on bigDataUrl BRG1Dex_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-150-bin10-normalizeUsingRPKM-scale.bw shortLabel Brg1Dex coverage longLabel Brg1Dex coverage type bigWig color 255,69,0 priority 2208 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Brg1Dex view=COV ## Coverage track track GREtOHBRG1_coverage parent trotterJune0214View1 on bigDataUrl GREtOHBRG1_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-150-bin10-normalizeUsingRPKM-scale.bw shortLabel GREtOH coverage longLabel GREtOH coverage type bigWig color 159,121,238 priority 2210 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=GREtOH view=COV ## Coverage track track GRDexBRG1_coverage parent trotterJune0214View1 on bigDataUrl GRDexBRG1_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-150-bin10-normalizeUsingRPKM-scale.bw shortLabel GRDex coverage longLabel GRDex coverage type bigWig color 138,43,226 priority 2212 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=GRDex view=COV ## Coverage track track Ku70EtOH_coverage parent trotterJune0214View1 on bigDataUrl Ku70EtOH_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-150-bin10-normalizeUsingRPKM-scale.bw shortLabel Ku70EtOH coverage longLabel Ku70EtOH coverage type bigWig color 32,178,170 priority 2214 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Ku70EtOH view=COV ## Coverage track track Ku70Dex_coverage parent trotterJune0214View1 on bigDataUrl Ku70Dex_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-150-bin10-normalizeUsingRPKM-scale.bw shortLabel Ku70Dex coverage longLabel Ku70Dex coverage type bigWig color 0,134,139 priority 2216 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Ku70Dex view=COV ## Beginning of track view track trotter1xJune0214 compositeTrack on shortLabel Trotter ChIPseq June2014 (1xRPGC) longLabel Trotter ChIPseq June2014 (1xRPGC) priority 2400 visibility full type bed 3 configurable on subGroup1 view Views \ COV=Coverage \ PEAK=Peaks \ JUNC=Junctions subGroup2 Group1 Group1 \ InputEtOH=InputEtOH \ InputDex=InputDex \ Brg1EtOH=Brg1EtOH \ Brg1Dex=Brg1Dex \ GREtOH=GREtOH \ GRDex=GRDex \ Ku70EtOH=Ku70EtOH \ Ku70Dex=Ku70Dex sortOrder Group1=+ view=+ ## Views track coverage data track trotter1xJune0214View1 parent trotter1xJune0214 shortLabel Coverage view COV visibility full type bigWig allButtonPair on centerLabelsDense on dragAndDrop on alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 viewUi on ## Coverage track track InputEtOH_coverage_1x parent trotter1xJune0214View1 on bigDataUrl InputEtOH_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-150-bin10-normalizeTo1x-scale.bw shortLabel InputEtOH coverage longLabel InputEtOH coverage type bigWig color 127,127,127 priority 2402 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=InputEtOH view=COV ## Coverage track track InputDex_coverage_1x parent trotter1xJune0214View1 on bigDataUrl InputDex_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-150-bin10-normalizeTo1x-scale.bw shortLabel InputDex coverage longLabel InputDex coverage type bigWig color 77,77,77 priority 2404 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=InputDex view=COV ## Coverage track track BRG1EtOH_coverage_1x parent trotter1xJune0214View1 on bigDataUrl BRG1EtOH_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-150-bin10-normalizeTo1x-scale.bw shortLabel Brg1EtOH coverage longLabel Brg1EtOH coverage type bigWig color 255,140,105 priority 2406 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Brg1EtOH view=COV ## Coverage track track BRG1Dex_coverage_1x parent trotter1xJune0214View1 on bigDataUrl BRG1Dex_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-150-bin10-normalizeTo1x-scale.bw shortLabel Brg1Dex coverage longLabel Brg1Dex coverage type bigWig color 255,69,0 priority 2408 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Brg1Dex view=COV ## Coverage track track GREtOHBRG1_coverage_1x parent trotter1xJune0214View1 on bigDataUrl GREtOHBRG1_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-150-bin10-normalizeTo1x-scale.bw shortLabel GREtOH coverage longLabel GREtOH coverage type bigWig color 159,121,238 priority 2410 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=GREtOH view=COV ## Coverage track track GRDexBRG1_coverage_1x parent trotter1xJune0214View1 on bigDataUrl GRDexBRG1_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-150-bin10-normalizeTo1x-scale.bw shortLabel GRDex coverage longLabel GRDex coverage type bigWig color 138,43,226 priority 2412 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=GRDex view=COV ## Coverage track track Ku70EtOH_coverage_1x parent trotter1xJune0214View1 on bigDataUrl Ku70EtOH_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-150-bin10-normalizeTo1x-scale.bw shortLabel Ku70EtOH coverage longLabel Ku70EtOH coverage type bigWig color 32,178,170 priority 2414 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Ku70EtOH view=COV ## Coverage track track Ku70Dex_coverage_1x parent trotter1xJune0214View1 on bigDataUrl Ku70Dex_s.sickle.merged.bowtieSe_hg19.sorted.bamCov-150-bin10-normalizeTo1x-scale.bw shortLabel Ku70Dex coverage longLabel Ku70Dex coverage type bigWig color 0,134,139 priority 2416 alwaysZero on graphTypeDefault bar maxHeightPixels 100:40:8 smoothingWindow 2 transformFunc NONE windowingFunction mean+whiskers gridDefault on viewLimits 0:20 visibility hide subGroups Group1=Ku70Dex view=COV ## Views track for ChIPseq peaks track trotter1xJune0214View3 parent trotter1xJune0214 shortLabel Peaks view PEAK visibility pack type bigBed allButtonPair on centerLabelsDense on dragAndDrop on viewUi on # Peak track track Brg1EtOH_peaks parent trotter1xJune0214View3 on bigDataUrl Brg1EtOH_Vs_InputEtOH.findPeaks_none-region.150.150_fdr0.001_p0.0001_foc0_loc2000_fc4_min7.sorted.bb shortLabel Brg1EtOH peaks longLabel Brg1EtOH peaks type bigBed visibility pack priority 2602 color 255,140,105 subGroups Group1=Brg1EtOH view=PEAK # Peak track track Brg1Dex_peaks parent trotter1xJune0214View3 on bigDataUrl Brg1Dex_Vs_InputDex.findPeaks_none-region.150.150_fdr0.001_p0.0001_foc0_loc2000_fc4_min7.sorted.bb shortLabel Brg1Dex peaks longLabel Brg1Dex peaks type bigBed visibility pack priority 2604 color 255,69,0 subGroups Group1=Brg1Dex view=PEAK # Peak track track GREtOH_peaks parent trotter1xJune0214View3 on bigDataUrl GREtOH_Vs_InputEtOH.findPeaks_none-region.150.150_fdr0.001_p0.0001_foc0_loc2000_fc4_min7.sorted.bb shortLabel GREtOH peaks longLabel GREtOH peaks type bigBed visibility pack priority 2606 color 159,121,238 subGroups Group1=GREtOH view=PEAK # Peak track track GRDex_peaks parent trotter1xJune0214View3 on bigDataUrl GRDex_Vs_InputDex.findPeaks_none-region.150.150_fdr0.001_p0.0001_foc0_loc2000_fc4_min7.sorted.bb shortLabel GRDex peaks longLabel GRDex peaks type bigBed visibility pack priority 2608 color 138,43,226 subGroups Group1=GRDex view=PEAK # Peak track track Ku70EtOH_peaks parent trotter1xJune0214View3 on bigDataUrl Ku70EtOH_Vs_InputEtOH.findPeaks_none-region.150.150_fdr0.001_p0.0001_foc0_loc2000_fc4_min7.sorted.bb shortLabel Ku70EtOH peaks longLabel Ku70EtOH peaks type bigBed visibility pack priority 2610 color 32,178,170 subGroups Group1=Ku70EtOH view=PEAK # Peak track track Ku70Dex_peaks parent trotter1xJune0214View3 on bigDataUrl Ku70Dex_Vs_InputDex.findPeaks_none-region.150.150_fdr0.001_p0.0001_foc0_loc2000_fc4_min7.sorted.bb shortLabel Ku70Dex peaks longLabel Ku70Dex peaks type bigBed visibility pack priority 2612 color 0,134,139 subGroups Group1=Ku70Dex view=PEAK