#!/bin/bash
#
# simple bash command to make track config lines


#for t in `grep ^homer trackDb_peaks.txt `; do echo ${t} | perl -p -e 'chomp;$line=$_;$_="";$peak=$line;$peak=~s/homerComparison_//;$peak=~s/[.]findPeaks.+//;$priority=$priority+1;sub BEGIN{$priority=1691;};print "   # $peak\n   track           $peak\_min7\n   parent          trotterMiseqPeaks\n   bigDataUrl      $line\n   shortLabel      $peak (min7)\n   longLabel       $peak (min7))\n   type            bigBed\n   color           37,113,53\n   visibility      dense\n   priority        $priority\n\n";'; done > trackDb_miseqPeaks_feb2014.txt
ls  homer*bb | perl -p -e 'chomp;$line=$_;$_="";$peak=$line;$peak=~s/homerComparison_//;$peak=~s/[.]findPeaks.+//;
if ($priority==0) {$priority=1691;};
$priority=$priority + 1;
sub BEGIN{print "\n";};
print "   # $peak\n   track           $peak\_min7\n   parent          trotterMiseqPeaks\n   bigDataUrl      $line\n   shortLabel      $peak (min7)\n   longLabel       $peak (min7)\n   type            bigBed\n   color           37,113,53\n   visibility      dense\n   priority        $priority\n\n";' > trackDb_miseqPeaks_feb2014.txt